| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011056 |
Definition |
Mycobacterium phage Kostya, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus. |
DB of origin |
REFSEQ |
Length |
75811 |
Host Name |
Mycobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
143 |
%GC |
62.91 |
Number of singletons |
5 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002014585.1 | NC_011056_p117 | hypothetical protein | phrog_14507 | unknown function | unknown function | 1 | 66779 | 66877 |
| YP_002014606.1 | NC_011056_p138 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 73751 | 73924 |
| YP_002014583.1 | NC_011056_p115 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 65528 | 65812 |
| YP_002014528.1 | NC_011056_p60 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 41866 | 42012 |
| YP_002014594.1 | NC_011056_p126 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 68794 | 68955 |
| YP_002014478.1 | NC_011056_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5029 | 5199 |
| YP_002014470.1 | NC_011056_p2 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| YP_002014593.1 | NC_011056_p125 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 68679 | 68810 |
| YP_002014486.1 | NC_011056_p18 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 10947 | 11351 |
| YP_002014469.1 | NC_011056_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 34 | 270 |
| YP_002014605.1 | NC_011056_p137 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 73354 | 73746 |
| YP_002014548.1 | NC_011056_p80 | helicase/DnaB | phrog_572 | unknown function | unknown function | 1 | 49805 | 50155 |
| YP_002014574.1 | NC_011056_p106 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61823 | 62113 |
| YP_002014537.1 | NC_011056_p69 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45579 | 46301 |
| YP_002014475.1 | NC_011056_p7 | hypothetical protein | phrog_2142 | unknown function | unknown function | 1 | 1511 | 1855 |
| YP_002014497.1 | NC_011056_p29 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 28044 | 28469 |
| YP_002014587.1 | NC_011056_p119 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 66998 | 67171 |
| YP_002014569.1 | NC_011056_p101 | Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 59805 | 60611 |
| YP_002014549.1 | NC_011056_p81 | hypothetical protein | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 50202 | 51410 |
| YP_002014535.1 | NC_011056_p67 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 44211 | 45179 |
| YP_002014577.1 | NC_011056_p109 | exonuclease | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 63062 | 63436 |
| YP_002014499.1 | NC_011056_p31 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28975 | 29151 |
| YP_002014518.1 | NC_011056_p50 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 36647 | 36793 |
| YP_002014579.1 | NC_011056_p111 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 63743 | 64336 |
| YP_002014511.1 | NC_011056_p43 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | -1 | 35038 | 35472 |
| YP_002014474.1 | NC_011056_p6 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 1057 | 1518 |
| YP_002014596.1 | NC_011056_p128 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 69594 | 69983 |
| YP_002014512.1 | NC_011056_p44 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35469 | 35744 |
| YP_002014490.1 | NC_011056_p22 | tape measure protein | phrog_2723 | tail length tape measure protein | tail | 1 | 13333 | 18066 |
| YP_002014531.1 | NC_011056_p63 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 43155 | 43262 |
| YP_002014526.1 | NC_011056_p58 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 40885 | 41022 |
| YP_002014527.1 | NC_011056_p59 | hypothetical protein | phrog_923 | unknown function | unknown function | 1 | 41019 | 41864 |
| YP_002014501.1 | NC_011056_p33 | LysA | phrog_317 | endolysin | lysis | 1 | 29711 | 31144 |
| YP_002014516.1 | NC_011056_p48 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 36184 | 36354 |
| YP_002014604.1 | NC_011056_p136 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 72814 | 73350 |
| YP_002014487.1 | NC_011056_p19 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 11378 | 12349 |
| YP_002014600.1 | NC_011056_p132 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 71261 | 71590 |
| YP_002014586.1 | NC_011056_p118 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 66871 | 67011 |
| YP_002014489.1 | NC_011056_p21 | hypothetical protein | phrog_5940 | tail assembly chaperone | tail | 1 | 13062 | 13340 |
| YP_002014519.1 | NC_011056_p51 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 36793 | 37188 |
| YP_002014597.1 | NC_011056_p129 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 70102 | 70356 |
| YP_002014525.1 | NC_011056_p57 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 40790 | 40888 |
| YP_002014553.1 | NC_011056_p85 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 52041 | 52406 |
| YP_002014603.1 | NC_011056_p135 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 72562 | 72798 |
| YP_002014495.1 | NC_011056_p27 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24676 | 27522 |
| YP_002014507.1 | NC_011056_p39 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 33578 | 33964 |
| YP_002014541.1 | NC_011056_p73 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 47446 | 47817 |
| YP_002014503.1 | NC_011056_p35 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31524 | 31862 |
| YP_002014557.1 | NC_011056_p89 | polynucleotide kinase | phrog_2495 | unknown function | unknown function | 1 | 54159 | 54527 |
| YP_002014550.1 | NC_011056_p82 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51407 | 51595 |
| YP_002014547.1 | NC_011056_p79 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 49173 | 49823 |
| YP_002014584.1 | NC_011056_p116 | hypothetical protein | phrog_97 | UvsX-like recombinase | other | 1 | 65820 | 66782 |
| YP_002014545.1 | NC_011056_p77 | HNHc | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48633 | 48950 |
| YP_002014570.1 | NC_011056_p102 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 60613 | 60810 |
| YP_002014532.1 | NC_011056_p64 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 43270 | 43503 |
| YP_002014563.1 | NC_011056_p95 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 57231 | 57683 |
| YP_002014539.1 | NC_011056_p71 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 46605 | 47075 |
| YP_002014536.1 | NC_011056_p68 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 45176 | 45586 |
| YP_002014530.1 | NC_011056_p62 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 42831 | 43136 |
| YP_002014601.1 | NC_011056_p133 | hypothetical protein | phrog_4006 | unknown function | unknown function | -1 | 71595 | 72110 |
| YP_002014491.1 | NC_011056_p23 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 18096 | 19757 |
| YP_002014555.1 | NC_011056_p87 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 52762 | 52956 |
| YP_002014502.1 | NC_011056_p34 | holin | phrog_526 | holin | lysis | 1 | 31148 | 31531 |
| YP_002014498.1 | NC_011056_p30 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28550 | 28978 |
| YP_002014544.1 | NC_011056_p76 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 48238 | 48636 |
| YP_002014529.1 | NC_011056_p61 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 42009 | 42287 |
| YP_002014485.1 | NC_011056_p17 | hypothetical protein | phrog_2805 | minor tail protein | tail | 1 | 10589 | 10969 |
| YP_002014479.1 | NC_011056_p11 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 5246 | 6742 |
| YP_002014551.1 | NC_011056_p83 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 51592 | 51852 |
| YP_002014580.1 | NC_011056_p112 | DNA polymerase II | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 64347 | 65132 |
| YP_002014546.1 | NC_011056_p78 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 48940 | 49176 |
| YP_002014471.1 | NC_011056_p3 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| YP_002014573.1 | NC_011056_p105 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 61459 | 61770 |
| YP_002014564.1 | NC_011056_p96 | hypothetical protein | phrog_7833 | unknown function | unknown function | 1 | 57687 | 57809 |
| YP_002014567.1 | NC_011056_p99 | DNA methylase | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 58720 | 59283 |
| YP_002014610.1 | NC_011056_p142 | hypothetical protein | singleton | unknown function | unknown function | 1 | 74867 | 74944 |
| YP_002014560.1 | NC_011056_p92 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 55999 | 56802 |
| YP_002014566.1 | NC_011056_p98 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58179 | 58679 |
| YP_002014523.1 | NC_011056_p55 | Msmeg_3136 | phrog_950 | unknown function | unknown function | -1 | 39265 | 40014 |
| YP_002014506.1 | NC_011056_p38 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33136 | 33381 |
| YP_002014581.1 | NC_011056_p113 | hypothetical protein | phrog_3647 | unknown function | unknown function | 1 | 65129 | 65281 |
| YP_002014572.1 | NC_011056_p104 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 61164 | 61454 |
| YP_002014543.1 | NC_011056_p75 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 47993 | 48226 |
| YP_002014590.1 | NC_011056_p122 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 68018 | 68185 |
| YP_002014481.1 | NC_011056_p13 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7927 | 9420 |
| YP_002014513.1 | NC_011056_p45 | hypothetical protein | phrog_6127 | unknown function | unknown function | -1 | 35737 | 35850 |
| YP_002014504.1 | NC_011056_p36 | LysB | phrog_102 | endolysin | lysis | 1 | 31859 | 32716 |
| YP_002014552.1 | NC_011056_p84 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 51827 | 52048 |
| YP_002014533.1 | NC_011056_p65 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 43503 | 43664 |
| YP_002014508.1 | NC_011056_p40 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 34012 | 34209 |
| YP_002014575.1 | NC_011056_p107 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 62495 | 62791 |
| YP_002014473.1 | NC_011056_p5 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 813 | 1064 |
| YP_002014484.1 | NC_011056_p16 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 10257 | 10592 |
| YP_002014472.1 | NC_011056_p4 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 786 |
| YP_002014608.1 | NC_011056_p140 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 74161 | 74364 |
| YP_002014522.1 | NC_011056_p54 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 39048 | 39287 |
| YP_002014480.1 | NC_011056_p12 | hypothetical protein | phrog_2753 | head maturation protease | head and packaging | 1 | 6745 | 7839 |
| YP_002014595.1 | NC_011056_p127 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 69334 | 69597 |
| YP_002014562.1 | NC_011056_p94 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 57076 | 57234 |
| YP_002014520.1 | NC_011056_p52 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 37475 | 37777 |
| YP_002014565.1 | NC_011056_p97 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 57811 | 58146 |
| YP_002014492.1 | NC_011056_p24 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 19745 | 21424 |
| YP_002014505.1 | NC_011056_p37 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32713 | 33129 |
| YP_002014602.1 | NC_011056_p134 | hypothetical protein | phrog_8217 | unknown function | unknown function | -1 | 72131 | 72442 |
| YP_002014542.1 | NC_011056_p74 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 47817 | 47990 |
| YP_002014534.1 | NC_011056_p66 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 43885 | 44214 |
| YP_002014476.1 | NC_011056_p8 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1956 | 2267 |
| YP_002014559.1 | NC_011056_p91 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 54619 | 55944 |
| YP_002014494.1 | NC_011056_p26 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 22283 | 24679 |
| YP_002014517.1 | NC_011056_p49 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 36413 | 36628 |
| YP_002014591.1 | NC_011056_p123 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 68169 | 68369 |
| YP_002014556.1 | NC_011056_p88 | 5'-hydroxyl kinase, a 3'-phosphatase and a 2',3'-cyclic phosphodiesterase | phrog_505 | polynucleotide kinase | other | 1 | 53111 | 54052 |
| YP_002014538.1 | NC_011056_p70 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 46294 | 46605 |
| YP_002014524.1 | NC_011056_p56 | hypothetical protein | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 40133 | 40564 |
| YP_002014589.1 | NC_011056_p121 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 67608 | 68021 |
| YP_002014483.1 | NC_011056_p15 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 9678 | 10244 |
| YP_002014496.1 | NC_011056_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27523 | 28047 |
| YP_002014558.1 | NC_011056_p90 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 54500 | 54622 |
| YP_002014493.1 | NC_011056_p25 | hypothetical protein | phrog_732 | minor tail protein | tail | 1 | 21433 | 22266 |
| YP_002014521.1 | NC_011056_p53 | integrase | phrog_1 | integrase | integration and excision | 1 | 38070 | 38909 |
| YP_002014588.1 | NC_011056_p120 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 67357 | 67611 |
| YP_002014514.1 | NC_011056_p46 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 35847 | 36020 |
| YP_002014609.1 | NC_011056_p141 | hypothetical protein | singleton | unknown function | unknown function | 1 | 74515 | 74883 |
| YP_002014561.1 | NC_011056_p93 | WhiB/HNH endo | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 56799 | 57059 |
| YP_002014592.1 | NC_011056_p124 | hypothetical protein | phrog_33413 | unknown function | unknown function | 1 | 68371 | 68679 |
| YP_002014477.1 | NC_011056_p9 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2303 | 4966 |
| YP_002014515.1 | NC_011056_p47 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36020 | 36187 |
| YP_002014578.1 | NC_011056_p110 | hypothetical protein | phrog_4826 | unknown function | unknown function | 1 | 63436 | 63753 |
| YP_002014571.1 | NC_011056_p103 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 60807 | 61163 |
| YP_002014599.1 | NC_011056_p131 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 70789 | 71247 |
| YP_002014607.1 | NC_011056_p139 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 73928 | 74155 |
| YP_002014500.1 | NC_011056_p32 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29284 | 29568 |
| YP_002014611.1 | NC_011056_p143 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 75019 | 75240 |
| YP_002014568.1 | NC_011056_p100 | SSB | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59276 | 59716 |
| YP_002014540.1 | NC_011056_p72 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 47075 | 47443 |
| YP_002014488.1 | NC_011056_p20 | hypothetical protein | phrog_621 | tail assembly chaperone | tail | 1 | 12469 | 12930 |
| YP_002014509.1 | NC_011056_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34206 | 34766 |
| YP_002014510.1 | NC_011056_p42 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 34763 | 35041 |
| YP_002014482.1 | NC_011056_p14 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 9487 | 9678 |
| YP_002014554.1 | NC_011056_p86 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 52403 | 52765 |
| YP_002014598.1 | NC_011056_p130 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 70424 | 70792 |
| YP_002014576.1 | NC_011056_p108 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 62788 | 63051 |
| YP_002014582.1 | NC_011056_p114 | hypothetical protein | phrog_8804 | unknown function | unknown function | 1 | 65278 | 65487 |