Genomic map of Mycobacterium virus Kostya (NC_011056)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_011056
Definition
Mycobacterium phage Kostya, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus.
DB of origin
REFSEQ
Length
75811
Host Name
Mycobacterium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
143
%GC
62.91
Number of singletons
5
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002014585.1 NC_011056_p117 hypothetical protein phrog_14507 unknown function unknown function 1 66779 66877
YP_002014606.1 NC_011056_p138 hypothetical protein phrog_1438 unknown function unknown function -1 73751 73924
YP_002014583.1 NC_011056_p115 hypothetical protein phrog_1941 unknown function unknown function 1 65528 65812
YP_002014528.1 NC_011056_p60 hypothetical protein phrog_2463 unknown function unknown function 1 41866 42012
YP_002014594.1 NC_011056_p126 hypothetical protein phrog_3016 unknown function unknown function 1 68794 68955
YP_002014478.1 NC_011056_p10 hypothetical protein singleton unknown function unknown function 1 5029 5199
YP_002014470.1 NC_011056_p2 hypothetical protein phrog_4110 unknown function unknown function 1 267 449
YP_002014593.1 NC_011056_p125 hypothetical protein phrog_2897 unknown function unknown function 1 68679 68810
YP_002014486.1 NC_011056_p18 hypothetical protein phrog_813 head-tail adaptor connector 1 10947 11351
YP_002014469.1 NC_011056_p1 hypothetical protein phrog_3456 unknown function unknown function 1 34 270
YP_002014605.1 NC_011056_p137 hypothetical protein phrog_3174 unknown function unknown function -1 73354 73746
YP_002014548.1 NC_011056_p80 helicase/DnaB phrog_572 unknown function unknown function 1 49805 50155
YP_002014574.1 NC_011056_p106 HNH endonuclease phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 61823 62113
YP_002014537.1 NC_011056_p69 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 45579 46301
YP_002014475.1 NC_011056_p7 hypothetical protein phrog_2142 unknown function unknown function 1 1511 1855
YP_002014497.1 NC_011056_p29 hypothetical protein phrog_553 minor tail protein tail 1 28044 28469
YP_002014587.1 NC_011056_p119 hypothetical protein phrog_2755 unknown function unknown function 1 66998 67171
YP_002014569.1 NC_011056_p101 Clp protease phrog_94 head maturation protease head and packaging 1 59805 60611
YP_002014549.1 NC_011056_p81 hypothetical protein phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 50202 51410
YP_002014535.1 NC_011056_p67 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 44211 45179
YP_002014577.1 NC_011056_p109 exonuclease phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 63062 63436
YP_002014499.1 NC_011056_p31 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 28975 29151
YP_002014518.1 NC_011056_p50 hypothetical protein phrog_2815 unknown function unknown function -1 36647 36793
YP_002014579.1 NC_011056_p111 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 63743 64336
YP_002014511.1 NC_011056_p43 hypothetical protein phrog_1573 DNA methyltransferase other -1 35038 35472
YP_002014474.1 NC_011056_p6 terminase small subunit phrog_83 terminase small subunit head and packaging 1 1057 1518
YP_002014596.1 NC_011056_p128 hypothetical protein phrog_2579 ParB C-terminal domain DNA, RNA and nucleotide metabolism -1 69594 69983
YP_002014512.1 NC_011056_p44 hypothetical protein phrog_722 unknown function unknown function -1 35469 35744
YP_002014490.1 NC_011056_p22 tape measure protein phrog_2723 tail length tape measure protein tail 1 13333 18066
YP_002014531.1 NC_011056_p63 hypothetical protein phrog_3463 unknown function unknown function 1 43155 43262
YP_002014526.1 NC_011056_p58 hypothetical protein phrog_2852 unknown function unknown function 1 40885 41022
YP_002014527.1 NC_011056_p59 hypothetical protein phrog_923 unknown function unknown function 1 41019 41864
YP_002014501.1 NC_011056_p33 LysA phrog_317 endolysin lysis 1 29711 31144
YP_002014516.1 NC_011056_p48 hypothetical protein phrog_2893 unknown function unknown function -1 36184 36354
YP_002014604.1 NC_011056_p136 hypothetical protein phrog_2883 unknown function unknown function -1 72814 73350
YP_002014487.1 NC_011056_p19 major tail subunit phrog_476 major tail protein tail 1 11378 12349
YP_002014600.1 NC_011056_p132 hypothetical protein phrog_1587 unknown function unknown function -1 71261 71590
YP_002014586.1 NC_011056_p118 hypothetical protein phrog_2965 unknown function unknown function 1 66871 67011
YP_002014489.1 NC_011056_p21 hypothetical protein phrog_5940 tail assembly chaperone tail 1 13062 13340
YP_002014519.1 NC_011056_p51 hypothetical protein phrog_2759 unknown function unknown function -1 36793 37188
YP_002014597.1 NC_011056_p129 hypothetical protein phrog_2942 unknown function unknown function -1 70102 70356
YP_002014525.1 NC_011056_p57 hypothetical protein phrog_3071 unknown function unknown function 1 40790 40888
YP_002014553.1 NC_011056_p85 hypothetical protein phrog_3836 unknown function unknown function 1 52041 52406
YP_002014603.1 NC_011056_p135 hypothetical protein phrog_2287 unknown function unknown function -1 72562 72798
YP_002014495.1 NC_011056_p27 hypothetical protein phrog_382 minor tail protein with lysin activity tail 1 24676 27522
YP_002014507.1 NC_011056_p39 Lsr2 phrog_1223 nucloid associated Lsr2-like DNA, RNA and nucleotide metabolism -1 33578 33964
YP_002014541.1 NC_011056_p73 hypothetical protein phrog_572 unknown function unknown function 1 47446 47817
YP_002014503.1 NC_011056_p35 hypothetical protein phrog_2424 unknown function unknown function 1 31524 31862
YP_002014557.1 NC_011056_p89 polynucleotide kinase phrog_2495 unknown function unknown function 1 54159 54527
YP_002014550.1 NC_011056_p82 hypothetical protein phrog_1091 unknown function unknown function 1 51407 51595
YP_002014547.1 NC_011056_p79 hypothetical protein phrog_1882 unknown function unknown function 1 49173 49823
YP_002014584.1 NC_011056_p116 hypothetical protein phrog_97 UvsX-like recombinase other 1 65820 66782
YP_002014545.1 NC_011056_p77 HNHc phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 48633 48950
YP_002014570.1 NC_011056_p102 hypothetical protein phrog_1454 unknown function unknown function 1 60613 60810
YP_002014532.1 NC_011056_p64 hypothetical protein phrog_2147 unknown function unknown function 1 43270 43503
YP_002014563.1 NC_011056_p95 hypothetical protein phrog_889 unknown function unknown function 1 57231 57683
YP_002014539.1 NC_011056_p71 hypothetical protein phrog_2771 unknown function unknown function 1 46605 47075
YP_002014536.1 NC_011056_p68 hypothetical protein phrog_572 unknown function unknown function 1 45176 45586
YP_002014530.1 NC_011056_p62 hypothetical protein phrog_2744 unknown function unknown function 1 42831 43136
YP_002014601.1 NC_011056_p133 hypothetical protein phrog_4006 unknown function unknown function -1 71595 72110
YP_002014491.1 NC_011056_p23 hypothetical protein phrog_106 minor tail protein tail 1 18096 19757
YP_002014555.1 NC_011056_p87 hypothetical protein phrog_2894 unknown function unknown function 1 52762 52956
YP_002014502.1 NC_011056_p34 holin phrog_526 holin lysis 1 31148 31531
YP_002014498.1 NC_011056_p30 hypothetical protein phrog_644 unknown function unknown function 1 28550 28978
YP_002014544.1 NC_011056_p76 hypothetical protein phrog_289 GTP-binding domain other 1 48238 48636
YP_002014529.1 NC_011056_p61 hypothetical protein phrog_2800 unknown function unknown function 1 42009 42287
YP_002014485.1 NC_011056_p17 hypothetical protein phrog_2805 minor tail protein tail 1 10589 10969
YP_002014479.1 NC_011056_p11 portal protein phrog_12 portal protein head and packaging 1 5246 6742
YP_002014551.1 NC_011056_p83 hypothetical protein phrog_1821 transcriptional regulator WhiB-like transcription regulation 1 51592 51852
YP_002014580.1 NC_011056_p112 DNA polymerase II phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 64347 65132
YP_002014546.1 NC_011056_p78 hypothetical protein phrog_1673 unknown function unknown function 1 48940 49176
YP_002014471.1 NC_011056_p3 hypothetical protein phrog_2829 unknown function unknown function 1 446 604
YP_002014573.1 NC_011056_p105 hypothetical protein phrog_1969 unknown function unknown function 1 61459 61770
YP_002014564.1 NC_011056_p96 hypothetical protein phrog_7833 unknown function unknown function 1 57687 57809
YP_002014567.1 NC_011056_p99 DNA methylase phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism 1 58720 59283
YP_002014610.1 NC_011056_p142 hypothetical protein singleton unknown function unknown function 1 74867 74944
YP_002014560.1 NC_011056_p92 hypothetical protein phrog_1590 unknown function unknown function 1 55999 56802
YP_002014566.1 NC_011056_p98 hypothetical protein phrog_1568 DNA binding protein DNA, RNA and nucleotide metabolism 1 58179 58679
YP_002014523.1 NC_011056_p55 Msmeg_3136 phrog_950 unknown function unknown function -1 39265 40014
YP_002014506.1 NC_011056_p38 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 33136 33381
YP_002014581.1 NC_011056_p113 hypothetical protein phrog_3647 unknown function unknown function 1 65129 65281
YP_002014572.1 NC_011056_p104 hypothetical protein phrog_2757 unknown function unknown function 1 61164 61454
YP_002014543.1 NC_011056_p75 hypothetical protein phrog_2793 unknown function unknown function 1 47993 48226
YP_002014590.1 NC_011056_p122 hypothetical protein phrog_2764 unknown function unknown function 1 68018 68185
YP_002014481.1 NC_011056_p13 capsid protein phrog_10 major head protein head and packaging 1 7927 9420
YP_002014513.1 NC_011056_p45 hypothetical protein phrog_6127 unknown function unknown function -1 35737 35850
YP_002014504.1 NC_011056_p36 LysB phrog_102 endolysin lysis 1 31859 32716
YP_002014552.1 NC_011056_p84 hypothetical protein phrog_2747 unknown function unknown function 1 51827 52048
YP_002014533.1 NC_011056_p65 hypothetical protein phrog_2221 unknown function unknown function 1 43503 43664
YP_002014508.1 NC_011056_p40 hypothetical protein phrog_3481 unknown function unknown function -1 34012 34209
YP_002014575.1 NC_011056_p107 hypothetical protein phrog_2846 unknown function unknown function 1 62495 62791
YP_002014473.1 NC_011056_p5 hypothetical protein phrog_3858 unknown function unknown function 1 813 1064
YP_002014484.1 NC_011056_p16 hypothetical protein phrog_1531 head closure connector 1 10257 10592
YP_002014472.1 NC_011056_p4 hypothetical protein phrog_2775 unknown function unknown function 1 601 786
YP_002014608.1 NC_011056_p140 hypothetical protein phrog_2795 unknown function unknown function -1 74161 74364
YP_002014522.1 NC_011056_p54 hypothetical protein phrog_2842 unknown function unknown function 1 39048 39287
YP_002014480.1 NC_011056_p12 hypothetical protein phrog_2753 head maturation protease head and packaging 1 6745 7839
YP_002014595.1 NC_011056_p127 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 69334 69597
YP_002014562.1 NC_011056_p94 hypothetical protein phrog_2853 unknown function unknown function 1 57076 57234
YP_002014520.1 NC_011056_p52 hypothetical protein phrog_2847 unknown function unknown function -1 37475 37777
YP_002014565.1 NC_011056_p97 hypothetical protein phrog_2788 unknown function unknown function 1 57811 58146
YP_002014492.1 NC_011056_p24 hypothetical protein phrog_110 minor tail protein tail 1 19745 21424
YP_002014505.1 NC_011056_p37 hypothetical protein phrog_726 unknown function unknown function 1 32713 33129
YP_002014602.1 NC_011056_p134 hypothetical protein phrog_8217 unknown function unknown function -1 72131 72442
YP_002014542.1 NC_011056_p74 hypothetical protein phrog_1622 unknown function unknown function 1 47817 47990
YP_002014534.1 NC_011056_p66 hypothetical protein phrog_762 unknown function unknown function 1 43885 44214
YP_002014476.1 NC_011056_p8 hypothetical protein phrog_2202 unknown function unknown function -1 1956 2267
YP_002014559.1 NC_011056_p91 RNA ligase phrog_968 RNA ligase DNA, RNA and nucleotide metabolism 1 54619 55944
YP_002014494.1 NC_011056_p26 hypothetical protein phrog_346 minor tail protein tail 1 22283 24679
YP_002014517.1 NC_011056_p49 hypothetical protein phrog_2702 unknown function unknown function -1 36413 36628
YP_002014591.1 NC_011056_p123 hypothetical protein phrog_2823 unknown function unknown function 1 68169 68369
YP_002014556.1 NC_011056_p88 5'-hydroxyl kinase, a 3'-phosphatase and a 2',3'-cyclic phosphodiesterase phrog_505 polynucleotide kinase other 1 53111 54052
YP_002014538.1 NC_011056_p70 hypothetical protein phrog_2750 unknown function unknown function 1 46294 46605
YP_002014524.1 NC_011056_p56 hypothetical protein phrog_2745 transcriptional repressor transcription regulation -1 40133 40564
YP_002014589.1 NC_011056_p121 hypothetical protein phrog_2174 unknown function unknown function 1 67608 68021
YP_002014483.1 NC_011056_p15 hypothetical protein phrog_442 head-tail adaptor connector 1 9678 10244
YP_002014496.1 NC_011056_p28 hypothetical protein singleton unknown function unknown function 1 27523 28047
YP_002014558.1 NC_011056_p90 hypothetical protein phrog_2844 unknown function unknown function 1 54500 54622
YP_002014493.1 NC_011056_p25 hypothetical protein phrog_732 minor tail protein tail 1 21433 22266
YP_002014521.1 NC_011056_p53 integrase phrog_1 integrase integration and excision 1 38070 38909
YP_002014588.1 NC_011056_p120 hypothetical protein phrog_3062 unknown function unknown function 1 67357 67611
YP_002014514.1 NC_011056_p46 hypothetical protein phrog_1155 unknown function unknown function -1 35847 36020
YP_002014609.1 NC_011056_p141 hypothetical protein singleton unknown function unknown function 1 74515 74883
YP_002014561.1 NC_011056_p93 WhiB/HNH endo phrog_472 WhiB transcriptional factor transcription regulation 1 56799 57059
YP_002014592.1 NC_011056_p124 hypothetical protein phrog_33413 unknown function unknown function 1 68371 68679
YP_002014477.1 NC_011056_p9 terminase large subunit phrog_9 terminase large subunit head and packaging 1 2303 4966
YP_002014515.1 NC_011056_p47 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 36020 36187
YP_002014578.1 NC_011056_p110 hypothetical protein phrog_4826 unknown function unknown function 1 63436 63753
YP_002014571.1 NC_011056_p103 hypothetical protein phrog_2785 unknown function unknown function 1 60807 61163
YP_002014599.1 NC_011056_p131 hypothetical protein phrog_1915 unknown function unknown function -1 70789 71247
YP_002014607.1 NC_011056_p139 hypothetical protein phrog_2772 unknown function unknown function -1 73928 74155
YP_002014500.1 NC_011056_p32 hypothetical protein phrog_411 unknown function unknown function 1 29284 29568
YP_002014611.1 NC_011056_p143 hypothetical protein phrog_2762 unknown function unknown function 1 75019 75240
YP_002014568.1 NC_011056_p100 SSB phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 59276 59716
YP_002014540.1 NC_011056_p72 hypothetical protein phrog_1389 unknown function unknown function 1 47075 47443
YP_002014488.1 NC_011056_p20 hypothetical protein phrog_621 tail assembly chaperone tail 1 12469 12930
YP_002014509.1 NC_011056_p41 hypothetical protein singleton unknown function unknown function -1 34206 34766
YP_002014510.1 NC_011056_p42 hypothetical protein phrog_722 unknown function unknown function -1 34763 35041
YP_002014482.1 NC_011056_p14 hypothetical protein phrog_2796 head-tail connector protein connector 1 9487 9678
YP_002014554.1 NC_011056_p86 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 52403 52765
YP_002014598.1 NC_011056_p130 hypothetical protein phrog_3034 unknown function unknown function -1 70424 70792
YP_002014576.1 NC_011056_p108 hypothetical protein phrog_1042 unknown function unknown function 1 62788 63051
YP_002014582.1 NC_011056_p114 hypothetical protein phrog_8804 unknown function unknown function 1 65278 65487