Genomic map of Rhizobium phage 16-3 (NC_011103)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_011103
Definition
Rhizobium phage 16-3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
60195
Host Name
Rhizobium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
110
%GC
58.95
Number of singletons
48
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002117569.1 NC_011103_p11 p010 phrog_25 head closure Hc1 connector 1 6604 6951
YP_002117639.1 NC_011103_p81 p081 phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism 1 42583 43719
YP_002117559.1 NC_011103_p1 terminase small subunit phrog_5601 terminase small subunit head and packaging 1 46 510
YP_002117664.1 NC_011103_p106 p106 singleton unknown function unknown function 1 57830 57985
YP_002117589.1 NC_011103_p31 p031 singleton unknown function unknown function 1 20099 20260
YP_002117570.1 NC_011103_p12 p011 phrog_5 tail completion or Neck1 protein connector 1 6951 7367
YP_002117567.1 NC_011103_p9 p008 phrog_442 head-tail adaptor connector 1 5613 6158
YP_002117566.1 NC_011103_p8 p007 singleton unknown function unknown function 1 5423 5653
YP_002117627.1 NC_011103_p69 p069 singleton unknown function unknown function 1 36556 36723
YP_002117601.1 NC_011103_p43 p043 phrog_9995 unknown function unknown function 1 24625 24990
YP_002117660.1 NC_011103_p102 p102 singleton unknown function unknown function -1 56607 57425
YP_002117571.1 NC_011103_p13 p012 phrog_176 tail terminator connector 1 7386 7793
YP_002117594.1 NC_011103_p36 p036 phrog_9683 protease other 1 21624 22523
YP_002117609.1 NC_011103_p51 p051 phrog_139 deoxynucleoside monophosphate kinase other 1 28816 29484
YP_002117615.1 NC_011103_p57 p057 phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 32385 32654
YP_002117565.1 NC_011103_p7 p006 singleton unknown function unknown function -1 5064 5393
YP_002117617.1 NC_011103_p59 p059 phrog_1273 unknown function unknown function -1 32896 33243
YP_002117593.1 NC_011103_p35 p035 singleton unknown function unknown function 1 21218 21484
YP_002117577.1 NC_011103_p19 p018 phrog_12948 tail protein tail 1 11837 12541
YP_002117629.1 NC_011103_p71 p71 singleton unknown function unknown function 1 37115 37693
YP_002117642.1 NC_011103_p84 p084 phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism 1 44342 45016
YP_002117619.1 NC_011103_p61 p061 singleton unknown function unknown function -1 33697 33819
YP_002117656.1 NC_011103_p98 p098 phrog_19707 unknown function unknown function 1 52681 53055
YP_002117586.1 NC_011103_p28 p028 singleton unknown function unknown function 1 19039 19392
YP_002117653.1 NC_011103_p95 p095 singleton unknown function unknown function 1 51091 51285
YP_002117640.1 NC_011103_p82 p082 phrog_6074 unknown function unknown function 1 43719 43994
YP_002117632.1 NC_011103_p74 p074 phrog_13152 unknown function unknown function 1 38468 39295
YP_002117563.1 NC_011103_p5 p005b phrog_10 major head protein head and packaging 1 4109 5375
YP_002117607.1 NC_011103_p49 p049 singleton unknown function unknown function 1 28260 28460
YP_002117635.1 NC_011103_p77 p077 phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 40023 40814
YP_002117668.1 NC_011103_p110 holin phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 59848 60078
YP_002117657.1 NC_011103_p99 p099 phrog_14076 transcriptional regulator transcription regulation 1 53120 53329
YP_002117630.1 NC_011103_p72 p072 singleton unknown function unknown function 1 37858 38154
YP_002117636.1 NC_011103_p78 p078 phrog_2300 unknown function unknown function 1 41062 41685
YP_002117605.1 NC_011103_p47 p047 phrog_246 NinI-like serine-threonine phosphatase other 1 26753 27478
YP_002117663.1 NC_011103_p105 p105 singleton unknown function unknown function 1 57548 57691
YP_002117588.1 NC_011103_p30 p030 singleton unknown function unknown function 1 19925 20071
YP_002117598.1 NC_011103_p40 p040 singleton unknown function unknown function 1 23369 23905
YP_002117582.1 NC_011103_p24 p023 phrog_4250 EPS depolymerase tail 1 15889 18300
YP_002117590.1 NC_011103_p32 p032 singleton unknown function unknown function 1 20319 20582
YP_002117623.1 NC_011103_p65 p065 singleton unknown function unknown function -1 34422 34817
YP_002117597.1 NC_011103_p39 p039 singleton unknown function unknown function 1 23085 23375
YP_002117603.1 NC_011103_p45 p045 singleton unknown function unknown function 1 26246 26485
YP_002117578.1 NC_011103_p20 p019 singleton unknown function unknown function 1 12551 12709
YP_002117634.1 NC_011103_p76 p076 phrog_31096 unknown function unknown function 1 39619 39861
YP_002117643.1 NC_011103_p85 p085 phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism 1 45017 45970
YP_002117572.1 NC_011103_p14 p013 phrog_20380 unknown function unknown function 1 7793 7978
YP_002117662.1 NC_011103_p104 p104 singleton unknown function unknown function 1 57225 57548
YP_002117599.1 NC_011103_p41 p041 singleton unknown function unknown function 1 23905 24090
YP_002117579.1 NC_011103_p21 p020 phrog_2048 tail protein tail 1 12713 13285
YP_002117573.1 NC_011103_p15 p014 phrog_13196 major tail protein tail 1 8028 8474
YP_002117658.1 NC_011103_p100 p100 phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism 1 53283 54080
YP_002117596.1 NC_011103_p38 p038 singleton unknown function unknown function 1 22651 23067
YP_002117581.1 NC_011103_p23 tail fiber protein H phrog_5616 tail fiber protein tail 1 13703 15814
YP_002117648.1 NC_011103_p90 p090 singleton unknown function unknown function 1 49241 49522
YP_002117622.1 NC_011103_p64 p064 singleton unknown function unknown function 1 34346 34480
YP_002117608.1 NC_011103_p50 p050 singleton unknown function unknown function 1 28457 28819
YP_002117580.1 NC_011103_p22 p021 phrog_2134 unknown function unknown function 1 13270 13680
YP_002117667.1 NC_011103_p109 p109 singleton unknown function unknown function 1 59553 59855
YP_002117592.1 NC_011103_p34 p034 singleton unknown function unknown function 1 20579 20731
YP_002117610.1 NC_011103_p52 p052 singleton unknown function unknown function 1 29472 29672
YP_002117600.1 NC_011103_p42 p042 singleton unknown function unknown function 1 24087 24512
YP_002117633.1 NC_011103_p75 p075 singleton unknown function unknown function 1 39366 39626
YP_002117584.1 NC_011103_p26 pXu singleton unknown function unknown function 1 18390 18740
YP_002117649.1 NC_011103_p91 p091 phrog_10477 exonuclease DNA, RNA and nucleotide metabolism 1 49513 50271
YP_002117661.1 NC_011103_p103 p103 phrog_824 unknown function unknown function 1 56685 57194
YP_002117606.1 NC_011103_p48 p048 phrog_318 deoxyribonucleoside 5' monophosphate phosphatase other 1 27475 28242
YP_002117560.1 NC_011103_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 523 2100
YP_002117614.1 NC_011103_p56 p056 singleton unknown function unknown function -1 32086 32448
YP_002117621.1 NC_011103_p63 p063 phrog_839 unknown function unknown function -1 34168 34425
YP_002117644.1 NC_011103_p86 p086 phrog_1740 RNA polymerase sigma factor transcription regulation 1 45996 46496
YP_002117612.1 NC_011103_p54 Int phrog_1 integrase integration and excision -1 30783 31898
YP_002117587.1 NC_011103_p29 p029 phrog_181 endolysin lysis 1 19471 19962
YP_002117625.1 NC_011103_p67 C repressor protein phrog_4 transcriptional repressor transcription regulation -1 35673 36464
YP_002117583.1 NC_011103_p25 pXl phrog_1249 acetyltransferase other -1 18306 18689
YP_002117665.1 NC_011103_p107 p107 singleton unknown function unknown function 1 57975 58667
YP_002117562.1 NC_011103_p4 p004 phrog_80 head maturation protease head and packaging 1 3389 4033
YP_002117666.1 NC_011103_p108 homing endonuclease phrog_655 homing endonuclease DNA, RNA and nucleotide metabolism 1 58664 59413
YP_002117616.1 NC_011103_p58 p058 singleton unknown function unknown function -1 32651 32899
YP_002117651.1 NC_011103_p93 p093 singleton unknown function unknown function 1 50576 50737
YP_002117602.1 NC_011103_p44 p044 phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 24987 26249
YP_002117631.1 NC_011103_p73 p073 phrog_28502 unknown function unknown function 1 38151 38468
YP_002117561.1 NC_011103_p3 p003 phrog_12 portal protein head and packaging 1 2202 3392
YP_002117604.1 NC_011103_p46 p046 singleton unknown function unknown function 1 26538 26756
YP_002117638.1 NC_011103_p80 p080 phrog_1672 unknown function unknown function 1 42167 42568
YP_002117591.1 NC_011103_p33 p033 phrog_736 unknown function unknown function 1 20563 21066
YP_002117647.1 NC_011103_p89 p089 phrog_9174 unknown function unknown function 1 49017 49244
YP_002117637.1 NC_011103_p79 p079 phrog_478 site-specific recombination directionality factor RDF integration and excision 1 41754 42155
YP_002117646.1 NC_011103_p88 p088 phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 47008 48738
YP_002117568.1 NC_011103_p10 p009 phrog_4368 unknown function unknown function 1 6177 6602
YP_002117585.1 NC_011103_p27 p027 singleton unknown function unknown function -1 18737 18916
YP_002117654.1 NC_011103_p96 p096 phrog_799 DNA methyltransferase other 1 51381 52022
YP_002117645.1 NC_011103_p87 p087 phrog_1740 RNA polymerase sigma factor transcription regulation 1 46493 47008
YP_002117620.1 NC_011103_p62 p062 singleton unknown function unknown function 1 33782 34165
YP_002117595.1 NC_011103_p37 p037 singleton unknown function unknown function 1 22520 22654
YP_002117641.1 NC_011103_p83 p083 singleton unknown function unknown function 1 44015 44332
YP_002117574.1 NC_011103_p16 p015 phrog_8985 tail tube protein tail 1 8478 8831
YP_002117613.1 NC_011103_p55 excisionase singleton unknown function unknown function -1 31673 32095
YP_002117652.1 NC_011103_p94 p094 singleton unknown function unknown function 1 50734 51090
YP_002117575.1 NC_011103_p17 p016 phrog_18467 unknown function unknown function 1 8888 9040
YP_002117624.1 NC_011103_p66 p066 phrog_20840 unknown function unknown function -1 34877 35347
YP_002117618.1 NC_011103_p60 p060 singleton unknown function unknown function -1 33554 33697
YP_002117611.1 NC_011103_p53 p053 singleton unknown function unknown function -1 29739 30044
YP_002117576.1 NC_011103_p18 p017 phrog_8892 tail length tape measure protein tail 1 9267 11846
YP_002117650.1 NC_011103_p92 p092 singleton unknown function unknown function 1 50271 50576
YP_002117564.1 NC_011103_p6 p005a phrog_10 major head protein head and packaging 1 4109 5275
YP_002117659.1 NC_011103_p101 p101 phrog_906 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 54081 56249
YP_002117628.1 NC_011103_p70 p070 phrog_4 transcriptional repressor transcription regulation -1 37067 37678
YP_002117626.1 NC_011103_p68 p068 singleton unknown function unknown function 1 35703 35936
YP_002117655.1 NC_011103_p97 p097 phrog_67 DNA methyltransferase other 1 52013 52684