| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011103 |
Definition |
Rhizobium phage 16-3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
60195 |
Host Name |
Rhizobium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
110 |
%GC |
58.95 |
Number of singletons |
48 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002117569.1 | NC_011103_p11 | p010 | phrog_25 | head closure Hc1 | connector | 1 | 6604 | 6951 |
| YP_002117639.1 | NC_011103_p81 | p081 | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 42583 | 43719 |
| YP_002117559.1 | NC_011103_p1 | terminase small subunit | phrog_5601 | terminase small subunit | head and packaging | 1 | 46 | 510 |
| YP_002117664.1 | NC_011103_p106 | p106 | singleton | unknown function | unknown function | 1 | 57830 | 57985 |
| YP_002117589.1 | NC_011103_p31 | p031 | singleton | unknown function | unknown function | 1 | 20099 | 20260 |
| YP_002117570.1 | NC_011103_p12 | p011 | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6951 | 7367 |
| YP_002117567.1 | NC_011103_p9 | p008 | phrog_442 | head-tail adaptor | connector | 1 | 5613 | 6158 |
| YP_002117566.1 | NC_011103_p8 | p007 | singleton | unknown function | unknown function | 1 | 5423 | 5653 |
| YP_002117627.1 | NC_011103_p69 | p069 | singleton | unknown function | unknown function | 1 | 36556 | 36723 |
| YP_002117601.1 | NC_011103_p43 | p043 | phrog_9995 | unknown function | unknown function | 1 | 24625 | 24990 |
| YP_002117660.1 | NC_011103_p102 | p102 | singleton | unknown function | unknown function | -1 | 56607 | 57425 |
| YP_002117571.1 | NC_011103_p13 | p012 | phrog_176 | tail terminator | connector | 1 | 7386 | 7793 |
| YP_002117594.1 | NC_011103_p36 | p036 | phrog_9683 | protease | other | 1 | 21624 | 22523 |
| YP_002117609.1 | NC_011103_p51 | p051 | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 28816 | 29484 |
| YP_002117615.1 | NC_011103_p57 | p057 | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 32385 | 32654 |
| YP_002117565.1 | NC_011103_p7 | p006 | singleton | unknown function | unknown function | -1 | 5064 | 5393 |
| YP_002117617.1 | NC_011103_p59 | p059 | phrog_1273 | unknown function | unknown function | -1 | 32896 | 33243 |
| YP_002117593.1 | NC_011103_p35 | p035 | singleton | unknown function | unknown function | 1 | 21218 | 21484 |
| YP_002117577.1 | NC_011103_p19 | p018 | phrog_12948 | tail protein | tail | 1 | 11837 | 12541 |
| YP_002117629.1 | NC_011103_p71 | p71 | singleton | unknown function | unknown function | 1 | 37115 | 37693 |
| YP_002117642.1 | NC_011103_p84 | p084 | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 44342 | 45016 |
| YP_002117619.1 | NC_011103_p61 | p061 | singleton | unknown function | unknown function | -1 | 33697 | 33819 |
| YP_002117656.1 | NC_011103_p98 | p098 | phrog_19707 | unknown function | unknown function | 1 | 52681 | 53055 |
| YP_002117586.1 | NC_011103_p28 | p028 | singleton | unknown function | unknown function | 1 | 19039 | 19392 |
| YP_002117653.1 | NC_011103_p95 | p095 | singleton | unknown function | unknown function | 1 | 51091 | 51285 |
| YP_002117640.1 | NC_011103_p82 | p082 | phrog_6074 | unknown function | unknown function | 1 | 43719 | 43994 |
| YP_002117632.1 | NC_011103_p74 | p074 | phrog_13152 | unknown function | unknown function | 1 | 38468 | 39295 |
| YP_002117563.1 | NC_011103_p5 | p005b | phrog_10 | major head protein | head and packaging | 1 | 4109 | 5375 |
| YP_002117607.1 | NC_011103_p49 | p049 | singleton | unknown function | unknown function | 1 | 28260 | 28460 |
| YP_002117635.1 | NC_011103_p77 | p077 | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 40023 | 40814 |
| YP_002117668.1 | NC_011103_p110 | holin | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59848 | 60078 |
| YP_002117657.1 | NC_011103_p99 | p099 | phrog_14076 | transcriptional regulator | transcription regulation | 1 | 53120 | 53329 |
| YP_002117630.1 | NC_011103_p72 | p072 | singleton | unknown function | unknown function | 1 | 37858 | 38154 |
| YP_002117636.1 | NC_011103_p78 | p078 | phrog_2300 | unknown function | unknown function | 1 | 41062 | 41685 |
| YP_002117605.1 | NC_011103_p47 | p047 | phrog_246 | NinI-like serine-threonine phosphatase | other | 1 | 26753 | 27478 |
| YP_002117663.1 | NC_011103_p105 | p105 | singleton | unknown function | unknown function | 1 | 57548 | 57691 |
| YP_002117588.1 | NC_011103_p30 | p030 | singleton | unknown function | unknown function | 1 | 19925 | 20071 |
| YP_002117598.1 | NC_011103_p40 | p040 | singleton | unknown function | unknown function | 1 | 23369 | 23905 |
| YP_002117582.1 | NC_011103_p24 | p023 | phrog_4250 | EPS depolymerase | tail | 1 | 15889 | 18300 |
| YP_002117590.1 | NC_011103_p32 | p032 | singleton | unknown function | unknown function | 1 | 20319 | 20582 |
| YP_002117623.1 | NC_011103_p65 | p065 | singleton | unknown function | unknown function | -1 | 34422 | 34817 |
| YP_002117597.1 | NC_011103_p39 | p039 | singleton | unknown function | unknown function | 1 | 23085 | 23375 |
| YP_002117603.1 | NC_011103_p45 | p045 | singleton | unknown function | unknown function | 1 | 26246 | 26485 |
| YP_002117578.1 | NC_011103_p20 | p019 | singleton | unknown function | unknown function | 1 | 12551 | 12709 |
| YP_002117634.1 | NC_011103_p76 | p076 | phrog_31096 | unknown function | unknown function | 1 | 39619 | 39861 |
| YP_002117643.1 | NC_011103_p85 | p085 | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | 1 | 45017 | 45970 |
| YP_002117572.1 | NC_011103_p14 | p013 | phrog_20380 | unknown function | unknown function | 1 | 7793 | 7978 |
| YP_002117662.1 | NC_011103_p104 | p104 | singleton | unknown function | unknown function | 1 | 57225 | 57548 |
| YP_002117599.1 | NC_011103_p41 | p041 | singleton | unknown function | unknown function | 1 | 23905 | 24090 |
| YP_002117579.1 | NC_011103_p21 | p020 | phrog_2048 | tail protein | tail | 1 | 12713 | 13285 |
| YP_002117573.1 | NC_011103_p15 | p014 | phrog_13196 | major tail protein | tail | 1 | 8028 | 8474 |
| YP_002117658.1 | NC_011103_p100 | p100 | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 53283 | 54080 |
| YP_002117596.1 | NC_011103_p38 | p038 | singleton | unknown function | unknown function | 1 | 22651 | 23067 |
| YP_002117581.1 | NC_011103_p23 | tail fiber protein H | phrog_5616 | tail fiber protein | tail | 1 | 13703 | 15814 |
| YP_002117648.1 | NC_011103_p90 | p090 | singleton | unknown function | unknown function | 1 | 49241 | 49522 |
| YP_002117622.1 | NC_011103_p64 | p064 | singleton | unknown function | unknown function | 1 | 34346 | 34480 |
| YP_002117608.1 | NC_011103_p50 | p050 | singleton | unknown function | unknown function | 1 | 28457 | 28819 |
| YP_002117580.1 | NC_011103_p22 | p021 | phrog_2134 | unknown function | unknown function | 1 | 13270 | 13680 |
| YP_002117667.1 | NC_011103_p109 | p109 | singleton | unknown function | unknown function | 1 | 59553 | 59855 |
| YP_002117592.1 | NC_011103_p34 | p034 | singleton | unknown function | unknown function | 1 | 20579 | 20731 |
| YP_002117610.1 | NC_011103_p52 | p052 | singleton | unknown function | unknown function | 1 | 29472 | 29672 |
| YP_002117600.1 | NC_011103_p42 | p042 | singleton | unknown function | unknown function | 1 | 24087 | 24512 |
| YP_002117633.1 | NC_011103_p75 | p075 | singleton | unknown function | unknown function | 1 | 39366 | 39626 |
| YP_002117584.1 | NC_011103_p26 | pXu | singleton | unknown function | unknown function | 1 | 18390 | 18740 |
| YP_002117649.1 | NC_011103_p91 | p091 | phrog_10477 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 49513 | 50271 |
| YP_002117661.1 | NC_011103_p103 | p103 | phrog_824 | unknown function | unknown function | 1 | 56685 | 57194 |
| YP_002117606.1 | NC_011103_p48 | p048 | phrog_318 | deoxyribonucleoside 5' monophosphate phosphatase | other | 1 | 27475 | 28242 |
| YP_002117560.1 | NC_011103_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 523 | 2100 |
| YP_002117614.1 | NC_011103_p56 | p056 | singleton | unknown function | unknown function | -1 | 32086 | 32448 |
| YP_002117621.1 | NC_011103_p63 | p063 | phrog_839 | unknown function | unknown function | -1 | 34168 | 34425 |
| YP_002117644.1 | NC_011103_p86 | p086 | phrog_1740 | RNA polymerase sigma factor | transcription regulation | 1 | 45996 | 46496 |
| YP_002117612.1 | NC_011103_p54 | Int | phrog_1 | integrase | integration and excision | -1 | 30783 | 31898 |
| YP_002117587.1 | NC_011103_p29 | p029 | phrog_181 | endolysin | lysis | 1 | 19471 | 19962 |
| YP_002117625.1 | NC_011103_p67 | C repressor protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 35673 | 36464 |
| YP_002117583.1 | NC_011103_p25 | pXl | phrog_1249 | acetyltransferase | other | -1 | 18306 | 18689 |
| YP_002117665.1 | NC_011103_p107 | p107 | singleton | unknown function | unknown function | 1 | 57975 | 58667 |
| YP_002117562.1 | NC_011103_p4 | p004 | phrog_80 | head maturation protease | head and packaging | 1 | 3389 | 4033 |
| YP_002117666.1 | NC_011103_p108 | homing endonuclease | phrog_655 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 58664 | 59413 |
| YP_002117616.1 | NC_011103_p58 | p058 | singleton | unknown function | unknown function | -1 | 32651 | 32899 |
| YP_002117651.1 | NC_011103_p93 | p093 | singleton | unknown function | unknown function | 1 | 50576 | 50737 |
| YP_002117602.1 | NC_011103_p44 | p044 | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 24987 | 26249 |
| YP_002117631.1 | NC_011103_p73 | p073 | phrog_28502 | unknown function | unknown function | 1 | 38151 | 38468 |
| YP_002117561.1 | NC_011103_p3 | p003 | phrog_12 | portal protein | head and packaging | 1 | 2202 | 3392 |
| YP_002117604.1 | NC_011103_p46 | p046 | singleton | unknown function | unknown function | 1 | 26538 | 26756 |
| YP_002117638.1 | NC_011103_p80 | p080 | phrog_1672 | unknown function | unknown function | 1 | 42167 | 42568 |
| YP_002117591.1 | NC_011103_p33 | p033 | phrog_736 | unknown function | unknown function | 1 | 20563 | 21066 |
| YP_002117647.1 | NC_011103_p89 | p089 | phrog_9174 | unknown function | unknown function | 1 | 49017 | 49244 |
| YP_002117637.1 | NC_011103_p79 | p079 | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 41754 | 42155 |
| YP_002117646.1 | NC_011103_p88 | p088 | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 47008 | 48738 |
| YP_002117568.1 | NC_011103_p10 | p009 | phrog_4368 | unknown function | unknown function | 1 | 6177 | 6602 |
| YP_002117585.1 | NC_011103_p27 | p027 | singleton | unknown function | unknown function | -1 | 18737 | 18916 |
| YP_002117654.1 | NC_011103_p96 | p096 | phrog_799 | DNA methyltransferase | other | 1 | 51381 | 52022 |
| YP_002117645.1 | NC_011103_p87 | p087 | phrog_1740 | RNA polymerase sigma factor | transcription regulation | 1 | 46493 | 47008 |
| YP_002117620.1 | NC_011103_p62 | p062 | singleton | unknown function | unknown function | 1 | 33782 | 34165 |
| YP_002117595.1 | NC_011103_p37 | p037 | singleton | unknown function | unknown function | 1 | 22520 | 22654 |
| YP_002117641.1 | NC_011103_p83 | p083 | singleton | unknown function | unknown function | 1 | 44015 | 44332 |
| YP_002117574.1 | NC_011103_p16 | p015 | phrog_8985 | tail tube protein | tail | 1 | 8478 | 8831 |
| YP_002117613.1 | NC_011103_p55 | excisionase | singleton | unknown function | unknown function | -1 | 31673 | 32095 |
| YP_002117652.1 | NC_011103_p94 | p094 | singleton | unknown function | unknown function | 1 | 50734 | 51090 |
| YP_002117575.1 | NC_011103_p17 | p016 | phrog_18467 | unknown function | unknown function | 1 | 8888 | 9040 |
| YP_002117624.1 | NC_011103_p66 | p066 | phrog_20840 | unknown function | unknown function | -1 | 34877 | 35347 |
| YP_002117618.1 | NC_011103_p60 | p060 | singleton | unknown function | unknown function | -1 | 33554 | 33697 |
| YP_002117611.1 | NC_011103_p53 | p053 | singleton | unknown function | unknown function | -1 | 29739 | 30044 |
| YP_002117576.1 | NC_011103_p18 | p017 | phrog_8892 | tail length tape measure protein | tail | 1 | 9267 | 11846 |
| YP_002117650.1 | NC_011103_p92 | p092 | singleton | unknown function | unknown function | 1 | 50271 | 50576 |
| YP_002117564.1 | NC_011103_p6 | p005a | phrog_10 | major head protein | head and packaging | 1 | 4109 | 5275 |
| YP_002117659.1 | NC_011103_p101 | p101 | phrog_906 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 54081 | 56249 |
| YP_002117628.1 | NC_011103_p70 | p070 | phrog_4 | transcriptional repressor | transcription regulation | -1 | 37067 | 37678 |
| YP_002117626.1 | NC_011103_p68 | p068 | singleton | unknown function | unknown function | 1 | 35703 | 35936 |
| YP_002117655.1 | NC_011103_p97 | p097 | phrog_67 | DNA methyltransferase | other | 1 | 52013 | 52684 |