| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011107 |
Definition |
Pseudomonas phage PT2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Phikmvvirus; Pseudomonas virus PT2. |
DB of origin |
REFSEQ |
Length |
42961 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
62.18 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002117817.1 | NC_011107_p38 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 24543 | 25550 |
| YP_002117818.1 | NC_011107_p39 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 25647 | 26201 |
| YP_002117791.1 | NC_011107_p12 | hypothetical protein | phrog_5433 | unknown function | unknown function | 1 | 5013 | 5432 |
| YP_002117811.1 | NC_011107_p32 | hypothetical protein | phrog_6575 | unknown function | unknown function | 1 | 21009 | 21260 |
| YP_002117812.1 | NC_011107_p33 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 21260 | 21847 |
| YP_002117780.1 | NC_011107_p1 | hypothetical protein | phrog_21618 | unknown function | unknown function | 1 | 901 | 1122 |
| YP_002117783.1 | NC_011107_p4 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 2258 | 2797 |
| YP_002117820.1 | NC_011107_p41 | internal virion protein A | phrog_805 | internal virion protein | head and packaging | 1 | 28684 | 29229 |
| YP_002117815.1 | NC_011107_p36 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 21986 | 23518 |
| YP_002117829.1 | NC_011107_p50 | hypothetical protein | phrog_6597 | holin | lysis | 1 | 40711 | 40911 |
| YP_002117833.1 | NC_011107_p54 | hypothetical protein | phrog_7171 | minor head protein | head and packaging | 1 | 42131 | 42325 |
| YP_002117823.1 | NC_011107_p44 | tail fiber protein | phrog_6953 | tail fiber protein | tail | 1 | 35944 | 36699 |
| YP_002117798.1 | NC_011107_p19 | hypothetical protein | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8541 | 9731 |
| YP_002117825.1 | NC_011107_p46 | tail fiber protein | phrog_4176 | tail fiber protein | tail | 1 | 37129 | 38007 |
| YP_002117805.1 | NC_011107_p26 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15445 | 16386 |
| YP_002117782.1 | NC_011107_p3 | hypothetical protein | phrog_7124 | unknown function | unknown function | 1 | 2020 | 2247 |
| YP_002117781.1 | NC_011107_p2 | hypothetical protein | phrog_5722 | unknown function | unknown function | 1 | 1736 | 2020 |
| YP_002117788.1 | NC_011107_p9 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 4105 | 4392 |
| YP_002117789.1 | NC_011107_p10 | hypothetical protein | phrog_4955 | unknown function | unknown function | 1 | 4389 | 4625 |
| YP_002117793.1 | NC_011107_p14 | DNA binding protein | phrog_6982 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5863 | 6672 |
| YP_002117810.1 | NC_011107_p31 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18389 | 20836 |
| YP_002117816.1 | NC_011107_p37 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 23522 | 24490 |
| YP_002117801.1 | NC_011107_p22 | hypothetical protein | phrog_7292 | unknown function | unknown function | 1 | 11276 | 11611 |
| YP_002117787.1 | NC_011107_p8 | hypothetical protein | phrog_27649 | unknown function | unknown function | 1 | 3794 | 4105 |
| YP_002117822.1 | NC_011107_p43 | virion protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 31929 | 35942 |
| YP_002117828.1 | NC_011107_p49 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 38909 | 40714 |
| YP_002117830.1 | NC_011107_p51 | hypothetical protein | phrog_7 | endolysin | lysis | 1 | 40908 | 41390 |
| YP_002117806.1 | NC_011107_p27 | DNA endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 16376 | 16816 |
| YP_002117794.1 | NC_011107_p15 | hypothetical protein | phrog_9409 | unknown function | unknown function | 1 | 6752 | 7171 |
| YP_002117799.1 | NC_011107_p20 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 9721 | 10332 |
| YP_002117813.1 | NC_011107_p34 | structural protein | phrog_3112 | virion structural protein | head and packaging | 1 | 21678 | 21974 |
| YP_002117800.1 | NC_011107_p21 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 10332 | 11279 |
| YP_002117802.1 | NC_011107_p23 | exonuclease | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11608 | 14031 |
| YP_002117796.1 | NC_011107_p17 | hypothetical protein | phrog_9768 | unknown function | unknown function | 1 | 7474 | 7602 |
| YP_002117821.1 | NC_011107_p42 | internal virion protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 29229 | 31925 |
| YP_002117804.1 | NC_011107_p25 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 14396 | 15445 |
| YP_002117786.1 | NC_011107_p7 | hypothetical protein | phrog_7027 | unknown function | unknown function | 1 | 3520 | 3747 |
| YP_002117792.1 | NC_011107_p13 | hypothetical protein | phrog_6915 | unknown function | unknown function | 1 | 5501 | 5860 |
| YP_002117784.1 | NC_011107_p5 | hypothetical protein | phrog_31343 | unknown function | unknown function | 1 | 2847 | 3086 |
| YP_002117832.1 | NC_011107_p53 | hypothetical protein | phrog_6908 | minor head protein | head and packaging | 1 | 41767 | 42081 |
| YP_002117819.1 | NC_011107_p40 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 26204 | 28684 |
| YP_002117809.1 | NC_011107_p30 | hypothetical protein | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 18234 | 18380 |
| YP_002117807.1 | NC_011107_p28 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 16813 | 17859 |
| YP_002117797.1 | NC_011107_p18 | DnaG-like primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 7670 | 8494 |
| YP_002117808.1 | NC_011107_p29 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 17869 | 18237 |
| YP_002117785.1 | NC_011107_p6 | hypothetical protein | phrog_6951 | unknown function | unknown function | 1 | 3165 | 3533 |
| YP_002117826.1 | NC_011107_p47 | hypothetical protein | phrog_4950 | tail fiber protein | tail | 1 | 38202 | 38594 |
| YP_002117824.1 | NC_011107_p45 | hypothetical protein | phrog_17567 | unknown function | unknown function | 1 | 36699 | 37139 |
| YP_002117790.1 | NC_011107_p11 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 4641 | 4934 |
| YP_002117795.1 | NC_011107_p16 | hypothetical protein | phrog_2563 | unknown function | unknown function | 1 | 6942 | 7484 |
| YP_002117827.1 | NC_011107_p48 | hypothetical protein | phrog_891 | terminase small subunit | head and packaging | 1 | 38594 | 38899 |
| YP_002117803.1 | NC_011107_p24 | hypothetical protein | phrog_5437 | unknown function | unknown function | 1 | 14037 | 14339 |
| YP_002117814.1 | NC_011107_p35 | hypothetical protein | phrog_18808 | unknown function | unknown function | 1 | 21895 | 22125 |
| YP_002117831.1 | NC_011107_p52 | phage lambda Rz1-like protein | phrog_214 | Rz-like spanin | lysis | 1 | 41348 | 41677 |