| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011285 |
Definition |
Mycobacterium phage Troll4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dclasvirinae; Plotvirus. |
DB of origin |
REFSEQ |
Length |
64618 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
84 |
%GC |
59.61 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002241498.1 | NC_011285_p84 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 59937 | 60161 |
| YP_002241423.1 | NC_011285_p9 | hypothetical protein | phrog_64 | portal protein | head and packaging | 1 | 6392 | 7966 |
| YP_002241489.1 | NC_011285_p75 | hypothetical protein | phrog_10394 | unknown function | unknown function | 1 | 56756 | 56971 |
| YP_002241497.1 | NC_011285_p83 | hypothetical protein | phrog_11872 | unknown function | unknown function | 1 | 59644 | 59940 |
| YP_002241475.1 | NC_011285_p61 | hypothetical protein | phrog_8720 | unknown function | unknown function | 1 | 46552 | 47406 |
| YP_002241479.1 | NC_011285_p65 | FabG/L-xylulose reductase | phrog_3142 | FabG-like 3-oxoacyl-(acyl-carrier-protein) reductase | moron, auxiliary metabolic gene and host takeover | 1 | 49038 | 49748 |
| YP_002241455.1 | NC_011285_p41 | hypothetical protein | phrog_11465 | unknown function | unknown function | 1 | 34025 | 34606 |
| YP_002241492.1 | NC_011285_p78 | hypothetical protein | phrog_10814 | unknown function | unknown function | 1 | 58016 | 58537 |
| YP_002241456.1 | NC_011285_p42 | hypothetical protein | phrog_636 | unknown function | unknown function | -1 | 34612 | 35493 |
| YP_002241470.1 | NC_011285_p56 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 42852 | 43232 |
| YP_002241469.1 | NC_011285_p55 | hypothetical protein | phrog_10024 | unknown function | unknown function | 1 | 42183 | 42671 |
| YP_002241454.1 | NC_011285_p40 | LysB | phrog_102 | endolysin | lysis | 1 | 32756 | 34015 |
| YP_002241486.1 | NC_011285_p72 | hypothetical protein | phrog_10832 | unknown function | unknown function | 1 | 55836 | 56189 |
| YP_002241430.1 | NC_011285_p16 | hypothetical protein | phrog_3990 | major head protein | head and packaging | 1 | 10909 | 12093 |
| YP_002241482.1 | NC_011285_p68 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 53712 | 54812 |
| YP_002241444.1 | NC_011285_p30 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 24317 | 26587 |
| YP_002241427.1 | NC_011285_p13 | head protein | phrog_115 | minor head protein | head and packaging | 1 | 8792 | 9697 |
| YP_002241446.1 | NC_011285_p32 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 28635 | 29501 |
| YP_002241441.1 | NC_011285_p27 | tapemeasure protein | phrog_6435 | tail length tape measure protein | tail | 1 | 16383 | 21155 |
| YP_002241465.1 | NC_011285_p51 | hypothetical protein | phrog_11197 | unknown function | unknown function | 1 | 39344 | 39583 |
| YP_002241433.1 | NC_011285_p19 | hypothetical protein | phrog_4904 | unknown function | unknown function | 1 | 12790 | 13197 |
| YP_002241493.1 | NC_011285_p79 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 58537 | 58851 |
| YP_002241485.1 | NC_011285_p71 | hypothetical protein | phrog_2507 | unknown function | unknown function | 1 | 55603 | 55839 |
| YP_002241496.1 | NC_011285_p82 | hypothetical protein | phrog_10449 | unknown function | unknown function | 1 | 59346 | 59654 |
| YP_002241450.1 | NC_011285_p36 | hypothetical protein | phrog_9801 | unknown function | unknown function | 1 | 31251 | 31505 |
| YP_002241477.1 | NC_011285_p63 | methyltransferase | phrog_6636 | methyltransferase | other | 1 | 48027 | 48557 |
| YP_002241426.1 | NC_011285_p12 | hypothetical protein | phrog_2864 | unknown function | unknown function | 1 | 8616 | 8795 |
| YP_002241438.1 | NC_011285_p24 | hypothetical protein | phrog_4971 | major tail protein | tail | 1 | 14563 | 15405 |
| YP_002241466.1 | NC_011285_p52 | hypothetical protein | phrog_17737 | unknown function | unknown function | 1 | 39641 | 39856 |
| YP_002241480.1 | NC_011285_p66 | DNA Pol III alpha subunit | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 49859 | 53161 |
| YP_002241464.1 | NC_011285_p50 | hypothetical protein | phrog_5307 | unknown function | unknown function | 1 | 38676 | 39266 |
| YP_002241421.1 | NC_011285_p7 | VIP2 | phrog_15359 | unknown function | unknown function | 1 | 3837 | 4607 |
| YP_002241478.1 | NC_011285_p64 | hypothetical protein | phrog_10271 | unknown function | unknown function | 1 | 48554 | 49045 |
| YP_002241432.1 | NC_011285_p18 | hypothetical protein | phrog_5274 | unknown function | unknown function | 1 | 12461 | 12793 |
| YP_002241428.1 | NC_011285_p14 | hypothetical protein | phrog_4866 | head scaffolding protein | head and packaging | 1 | 9730 | 10437 |
| YP_002241449.1 | NC_011285_p35 | LysA | phrog_1512 | endolysin | lysis | 1 | 30271 | 31254 |
| YP_002241457.1 | NC_011285_p43 | hypothetical protein | phrog_11944 | unknown function | unknown function | -1 | 35577 | 35807 |
| YP_002241420.1 | NC_011285_p6 | hypothetical protein | phrog_11599 | unknown function | unknown function | 1 | 2137 | 3840 |
| YP_002241460.1 | NC_011285_p46 | hypothetical protein | phrog_7969 | unknown function | unknown function | 1 | 36800 | 37099 |
| YP_002241495.1 | NC_011285_p81 | hypothetical protein | phrog_25303 | unknown function | unknown function | 1 | 59089 | 59349 |
| YP_002241463.1 | NC_011285_p49 | hypothetical protein | phrog_11235 | unknown function | unknown function | 1 | 38304 | 38612 |
| YP_002241458.1 | NC_011285_p44 | hypothetical protein | phrog_10424 | unknown function | unknown function | -1 | 35807 | 36292 |
| YP_002241487.1 | NC_011285_p73 | hypothetical protein | phrog_10494 | unknown function | unknown function | 1 | 56186 | 56461 |
| YP_002241468.1 | NC_011285_p54 | hypothetical protein | phrog_10722 | unknown function | unknown function | 1 | 41799 | 42080 |
| YP_002241474.1 | NC_011285_p60 | hypothetical protein | phrog_10064 | unknown function | unknown function | 1 | 45480 | 46388 |
| YP_002241462.1 | NC_011285_p48 | hypothetical protein | phrog_13277 | unknown function | unknown function | 1 | 38207 | 38311 |
| YP_002241422.1 | NC_011285_p8 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 4604 | 6370 |
| YP_002241429.1 | NC_011285_p15 | hypothetical protein | phrog_5042 | unknown function | unknown function | 1 | 10453 | 10872 |
| YP_002241440.1 | NC_011285_p26 | hypothetical protein | phrog_6778 | tail assembly chaperone | tail | 1 | 16163 | 16381 |
| YP_002241490.1 | NC_011285_p76 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 56975 | 57415 |
| YP_002241443.1 | NC_011285_p29 | hypothetical protein | phrog_1885 | minor tail protein | tail | 1 | 22662 | 24317 |
| YP_002241437.1 | NC_011285_p23 | major tail subunit | phrog_5278 | unknown function | unknown function | 1 | 14373 | 14573 |
| YP_002241415.1 | NC_011285_p1 | hypothetical protein | phrog_5460 | unknown function | unknown function | 1 | 1 | 309 |
| YP_002241439.1 | NC_011285_p25 | hypothetical protein | phrog_4336 | tail assembly chaperone | tail | 1 | 15487 | 16140 |
| YP_002241467.1 | NC_011285_p53 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 39859 | 41802 |
| YP_002241451.1 | NC_011285_p37 | hypothetical protein | phrog_21841 | unknown function | unknown function | 1 | 31519 | 31776 |
| YP_002241431.1 | NC_011285_p17 | hypothetical protein | phrog_5318 | unknown function | unknown function | 1 | 12090 | 12458 |
| YP_002241484.1 | NC_011285_p70 | hypothetical protein | phrog_1981 | unknown function | unknown function | 1 | 55017 | 55637 |
| YP_002241459.1 | NC_011285_p45 | hypothetical protein | phrog_9402 | unknown function | unknown function | 1 | 36370 | 36759 |
| YP_002241424.1 | NC_011285_p10 | hypothetical protein | phrog_1375 | unknown function | unknown function | 1 | 7986 | 8198 |
| YP_002241461.1 | NC_011285_p47 | hypothetical protein | phrog_421 | unknown function | unknown function | 1 | 37101 | 38210 |
| YP_002241419.1 | NC_011285_p5 | hypothetical protein | phrog_12064 | unknown function | unknown function | 1 | 1965 | 2126 |
| YP_002241425.1 | NC_011285_p11 | tail assembly/metal protease | phrog_5556 | tail protein | tail | 1 | 8195 | 8656 |
| YP_002241445.1 | NC_011285_p31 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26587 | 28635 |
| YP_002241435.1 | NC_011285_p21 | hypothetical protein | phrog_4995 | unknown function | unknown function | 1 | 13549 | 13968 |
| YP_002241473.1 | NC_011285_p59 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44619 | 45479 |
| YP_002241494.1 | NC_011285_p80 | hypothetical protein | phrog_8685 | unknown function | unknown function | 1 | 58848 | 59096 |
| YP_002241418.1 | NC_011285_p4 | hypothetical protein | phrog_10761 | unknown function | unknown function | 1 | 1772 | 1936 |
| YP_002241447.1 | NC_011285_p33 | hypothetical protein | phrog_6443 | unknown function | unknown function | 1 | 29511 | 29831 |
| YP_002241434.1 | NC_011285_p20 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 13190 | 13552 |
| YP_002241472.1 | NC_011285_p58 | hypothetical protein | phrog_8491 | unknown function | unknown function | 1 | 44417 | 44605 |
| YP_002241491.1 | NC_011285_p77 | hypothetical protein | phrog_10149 | unknown function | unknown function | 1 | 57427 | 57999 |
| YP_002241417.1 | NC_011285_p3 | hypothetical protein | phrog_10843 | unknown function | unknown function | 1 | 1568 | 1762 |
| YP_002241452.1 | NC_011285_p38 | hypothetical protein | phrog_8515 | unknown function | unknown function | 1 | 31776 | 32315 |
| YP_002241442.1 | NC_011285_p28 | hypothetical protein | phrog_7161 | minor tail protein | tail | 1 | 21145 | 22665 |
| YP_002241481.1 | NC_011285_p67 | hypothetical protein | phrog_10638 | unknown function | unknown function | 1 | 53163 | 53684 |
| YP_002241448.1 | NC_011285_p34 | hypothetical protein | phrog_3758 | virion structural protein | head and packaging | 1 | 29834 | 30262 |
| YP_002241416.1 | NC_011285_p2 | hypothetical protein | phrog_7407 | unknown function | unknown function | 1 | 421 | 1524 |
| YP_002241436.1 | NC_011285_p22 | hypothetical protein | phrog_10150 | unknown function | unknown function | 1 | 14005 | 14361 |
| YP_002241471.1 | NC_011285_p57 | hypothetical protein | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43237 | 44415 |
| YP_002241488.1 | NC_011285_p74 | hypothetical protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 56464 | 56697 |
| YP_002241453.1 | NC_011285_p39 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32299 | 32754 |
| YP_002241476.1 | NC_011285_p62 | nucleotidase | phrog_415 | polynucleotide kinase | other | 1 | 47410 | 48027 |
| YP_002241483.1 | NC_011285_p69 | hypothetical protein | phrog_18095 | unknown function | unknown function | 1 | 54809 | 54985 |