| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011287 |
Definition |
Mycobacterium phage Pacc40, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
58554 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
101 |
%GC |
61.26 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002241620.1 | NC_011287_p36 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30392 | 30682 |
| YP_002241593.1 | NC_011287_p9 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6809 | 7105 |
| YP_002241662.1 | NC_011287_p78 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 49990 | 50265 |
| YP_002241658.1 | NC_011287_p74 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 48835 | 49050 |
| YP_002241677.1 | NC_011287_p93 | hypothetical protein | phrog_4307 | unknown function | unknown function | 1 | 54213 | 54518 |
| YP_002241585.1 | NC_011287_p1 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 108 | 563 |
| YP_002241684.1 | NC_011287_p100 | hypothetical protein | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57463 | 58086 |
| YP_002241668.1 | NC_011287_p84 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51605 | 51784 |
| YP_002241648.1 | NC_011287_p64 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 45641 | 45805 |
| YP_002241613.1 | NC_011287_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26248 | 26484 |
| YP_002241615.1 | NC_011287_p31 | LysB | phrog_102 | endolysin | lysis | 1 | 27689 | 28690 |
| YP_002241628.1 | NC_011287_p44 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 34743 | 35033 |
| YP_002241661.1 | NC_011287_p77 | hypothetical protein | phrog_7977 | unknown function | unknown function | 1 | 49651 | 49920 |
| YP_002241592.1 | NC_011287_p8 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6443 | 6772 |
| YP_002241629.1 | NC_011287_p45 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 35120 | 35317 |
| YP_002241605.1 | NC_011287_p21 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23165 | 23506 |
| YP_002241646.1 | NC_011287_p62 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 45344 | 45490 |
| YP_002241621.1 | NC_011287_p37 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30675 | 30767 |
| YP_002241651.1 | NC_011287_p67 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 46139 | 47044 |
| YP_002241612.1 | NC_011287_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26042 | 26182 |
| YP_002241678.1 | NC_011287_p94 | hypothetical protein | phrog_26794 | unknown function | unknown function | 1 | 54518 | 54736 |
| YP_002241680.1 | NC_011287_p96 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 54998 | 55399 |
| YP_002241635.1 | NC_011287_p51 | WhiB/HNH endonuclease | phrog_1333 | unknown function | unknown function | 1 | 37312 | 37806 |
| YP_002241594.1 | NC_011287_p10 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7095 | 7499 |
| YP_002241682.1 | NC_011287_p98 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55635 | 57257 |
| YP_002241675.1 | NC_011287_p91 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 53888 | 54052 |
| YP_002241667.1 | NC_011287_p83 | hypothetical protein | phrog_6625 | unknown function | unknown function | 1 | 51345 | 51608 |
| YP_002241589.1 | NC_011287_p5 | scaffold | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4378 | 5028 |
| YP_002241600.1 | NC_011287_p16 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 14976 | 16685 |
| YP_002241590.1 | NC_011287_p6 | capsid | phrog_267 | major head protein | head and packaging | 1 | 5047 | 5868 |
| YP_002241642.1 | NC_011287_p58 | hypothetical protein | phrog_1366 | unknown function | unknown function | 1 | 39768 | 40745 |
| YP_002241666.1 | NC_011287_p82 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 51061 | 51345 |
| YP_002241641.1 | NC_011287_p57 | hypothetical protein | phrog_5168 | unknown function | unknown function | 1 | 39307 | 39771 |
| YP_002241643.1 | NC_011287_p59 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40742 | 41104 |
| YP_002241660.1 | NC_011287_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49491 | 49658 |
| YP_002241601.1 | NC_011287_p17 | hypothetical protein | phrog_732 | minor tail protein | tail | 1 | 16726 | 17571 |
| YP_002241622.1 | NC_011287_p38 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 30871 | 31017 |
| YP_002241639.1 | NC_011287_p55 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 38925 | 39077 |
| YP_002241663.1 | NC_011287_p79 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 50262 | 50540 |
| YP_002241652.1 | NC_011287_p68 | hypothetical protein | phrog_4296 | unknown function | unknown function | 1 | 47041 | 47403 |
| YP_002241614.1 | NC_011287_p30 | LysA | phrog_700 | endolysin | lysis | 1 | 26481 | 27689 |
| YP_002241606.1 | NC_011287_p22 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23529 | 23783 |
| YP_002241618.1 | NC_011287_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29333 | 29566 |
| YP_002241669.1 | NC_011287_p85 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 51781 | 51921 |
| YP_002241654.1 | NC_011287_p70 | hypothetical protein | phrog_6275 | unknown function | unknown function | 1 | 47700 | 48080 |
| YP_002241630.1 | NC_011287_p46 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 35361 | 35744 |
| YP_002241617.1 | NC_011287_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28935 | 29309 |
| YP_002241627.1 | NC_011287_p43 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34450 | 34683 |
| YP_002241633.1 | NC_011287_p49 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 36690 | 36968 |
| YP_002241681.1 | NC_011287_p97 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 55396 | 55638 |
| YP_002241610.1 | NC_011287_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25608 | 25892 |
| YP_002241586.1 | NC_011287_p2 | hypothetical protein | phrog_9 | terminase large subunit | head and packaging | 1 | 571 | 2208 |
| YP_002241679.1 | NC_011287_p95 | hypothetical protein | phrog_3813 | unknown function | unknown function | 1 | 54729 | 55001 |
| YP_002241655.1 | NC_011287_p71 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 48080 | 48280 |
| YP_002241683.1 | NC_011287_p99 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 57260 | 57466 |
| YP_002241637.1 | NC_011287_p53 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 38285 | 38563 |
| YP_002241644.1 | NC_011287_p60 | DNA methylase N-4 | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 41101 | 45126 |
| YP_002241587.1 | NC_011287_p3 | portal | phrog_104 | portal protein | head and packaging | 1 | 2239 | 3609 |
| YP_002241640.1 | NC_011287_p56 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 39077 | 39310 |
| YP_002241659.1 | NC_011287_p75 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 49133 | 49504 |
| YP_002241598.1 | NC_011287_p14 | tapemeasure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9486 | 13181 |
| YP_002241602.1 | NC_011287_p18 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 17568 | 20105 |
| YP_002241588.1 | NC_011287_p4 | head assembly | phrog_1522 | head maturation protease | head and packaging | 1 | 3596 | 4351 |
| YP_002241671.1 | NC_011287_p87 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 52144 | 52443 |
| YP_002241609.1 | NC_011287_p25 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25262 | 25459 |
| YP_002241607.1 | NC_011287_p23 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23797 | 24435 |
| YP_002241604.1 | NC_011287_p20 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21988 | 23151 |
| YP_002241616.1 | NC_011287_p32 | holin | phrog_443 | holin | lysis | 1 | 28705 | 28938 |
| YP_002241619.1 | NC_011287_p35 | Exo | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29580 | 30374 |
| YP_002241649.1 | NC_011287_p65 | hypothetical protein | phrog_6193 | unknown function | unknown function | 1 | 45805 | 45927 |
| YP_002241685.1 | NC_011287_p101 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 58086 | 58412 |
| YP_002241657.1 | NC_011287_p73 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 48569 | 48838 |
| YP_002241664.1 | NC_011287_p80 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | 1 | 50537 | 50704 |
| YP_002241656.1 | NC_011287_p72 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 48264 | 48572 |
| YP_002241650.1 | NC_011287_p66 | hypothetical protein | phrog_5500 | unknown function | unknown function | 1 | 45924 | 46142 |
| YP_002241603.1 | NC_011287_p19 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 20102 | 21991 |
| YP_002241597.1 | NC_011287_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8532 | 9083 |
| YP_002241591.1 | NC_011287_p7 | hypothetical protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5877 | 6446 |
| YP_002241632.1 | NC_011287_p48 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 35926 | 36615 |
| YP_002241623.1 | NC_011287_p39 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 31017 | 31217 |
| YP_002241611.1 | NC_011287_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25899 | 26045 |
| YP_002241631.1 | NC_011287_p47 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 35741 | 35929 |
| YP_002241665.1 | NC_011287_p81 | hypothetical protein | phrog_3381 | unknown function | unknown function | 1 | 50751 | 50969 |
| YP_002241636.1 | NC_011287_p52 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 37803 | 38288 |
| YP_002241673.1 | NC_011287_p89 | hypothetical protein | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 52550 | 53077 |
| YP_002241638.1 | NC_011287_p54 | hypothetical protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 38560 | 38925 |
| YP_002241653.1 | NC_011287_p69 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 47396 | 47620 |
| YP_002241645.1 | NC_011287_p61 | hypothetical protein | phrog_7443 | unknown function | unknown function | 1 | 45123 | 45344 |
| YP_002241674.1 | NC_011287_p90 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 53074 | 53745 |
| YP_002241670.1 | NC_011287_p86 | hypothetical protein | phrog_5186 | unknown function | unknown function | 1 | 51918 | 52091 |
| YP_002241676.1 | NC_011287_p92 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 54058 | 54216 |
| YP_002241599.1 | NC_011287_p15 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 13182 | 14891 |
| YP_002241608.1 | NC_011287_p24 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24432 | 25256 |
| YP_002241595.1 | NC_011287_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7537 | 8418 |
| YP_002241647.1 | NC_011287_p63 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 45487 | 45648 |
| YP_002241672.1 | NC_011287_p88 | hypothetical protein | phrog_6194 | unknown function | unknown function | 1 | 52440 | 52553 |
| YP_002241626.1 | NC_011287_p42 | hypothetical protein | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 33711 | 34451 |
| YP_002241596.1 | NC_011287_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8532 | 9468 |
| YP_002241634.1 | NC_011287_p50 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 36965 | 37312 |
| YP_002241624.1 | NC_011287_p40 | integrase | phrog_1 | integrase | integration and excision | 1 | 31614 | 32915 |
| YP_002241625.1 | NC_011287_p41 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 32993 | 33448 |