Genomic map of Mycobacterium virus Pacc40 (NC_011287)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_011287
Definition
Mycobacterium phage Pacc40, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus.
DB of origin
REFSEQ
Length
58554
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
101
%GC
61.26
Number of singletons
1
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002241620.1 NC_011287_p36 hypothetical protein phrog_1791 unknown function unknown function 1 30392 30682
YP_002241593.1 NC_011287_p9 hypothetical protein phrog_1929 head-tail connector protein connector 1 6809 7105
YP_002241662.1 NC_011287_p78 hypothetical protein phrog_722 unknown function unknown function 1 49990 50265
YP_002241658.1 NC_011287_p74 hypothetical protein phrog_2939 unknown function unknown function 1 48835 49050
YP_002241677.1 NC_011287_p93 hypothetical protein phrog_4307 unknown function unknown function 1 54213 54518
YP_002241585.1 NC_011287_p1 hypothetical protein phrog_226 minor tail protein tail 1 108 563
YP_002241684.1 NC_011287_p100 hypothetical protein phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 57463 58086
YP_002241668.1 NC_011287_p84 hypothetical protein phrog_1091 unknown function unknown function 1 51605 51784
YP_002241648.1 NC_011287_p64 hypothetical protein phrog_1311 unknown function unknown function 1 45641 45805
YP_002241613.1 NC_011287_p29 hypothetical protein phrog_747 unknown function unknown function 1 26248 26484
YP_002241615.1 NC_011287_p31 LysB phrog_102 endolysin lysis 1 27689 28690
YP_002241628.1 NC_011287_p44 hypothetical protein phrog_2025 unknown function unknown function 1 34743 35033
YP_002241661.1 NC_011287_p77 hypothetical protein phrog_7977 unknown function unknown function 1 49651 49920
YP_002241592.1 NC_011287_p8 hypothetical protein phrog_763 head-tail adaptor connector 1 6443 6772
YP_002241629.1 NC_011287_p45 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 35120 35317
YP_002241605.1 NC_011287_p21 hypothetical protein phrog_240 head protein head and packaging 1 23165 23506
YP_002241646.1 NC_011287_p62 hypothetical protein phrog_2704 unknown function unknown function 1 45344 45490
YP_002241621.1 NC_011287_p37 hypothetical protein phrog_1839 unknown function unknown function 1 30675 30767
YP_002241651.1 NC_011287_p67 hypothetical protein phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 46139 47044
YP_002241612.1 NC_011287_p28 hypothetical protein phrog_1172 unknown function unknown function 1 26042 26182
YP_002241678.1 NC_011287_p94 hypothetical protein phrog_26794 unknown function unknown function 1 54518 54736
YP_002241680.1 NC_011287_p96 hypothetical protein phrog_1186 unknown function unknown function 1 54998 55399
YP_002241635.1 NC_011287_p51 WhiB/HNH endonuclease phrog_1333 unknown function unknown function 1 37312 37806
YP_002241594.1 NC_011287_p10 hypothetical protein phrog_813 head-tail adaptor connector 1 7095 7499
YP_002241682.1 NC_011287_p98 glycosyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 55635 57257
YP_002241675.1 NC_011287_p91 hypothetical protein phrog_1869 unknown function unknown function 1 53888 54052
YP_002241667.1 NC_011287_p83 hypothetical protein phrog_6625 unknown function unknown function 1 51345 51608
YP_002241589.1 NC_011287_p5 scaffold phrog_2592 head scaffolding protein head and packaging 1 4378 5028
YP_002241600.1 NC_011287_p16 hypothetical protein phrog_110 minor tail protein tail 1 14976 16685
YP_002241590.1 NC_011287_p6 capsid phrog_267 major head protein head and packaging 1 5047 5868
YP_002241642.1 NC_011287_p58 hypothetical protein phrog_1366 unknown function unknown function 1 39768 40745
YP_002241666.1 NC_011287_p82 hypothetical protein phrog_1901 unknown function unknown function 1 51061 51345
YP_002241641.1 NC_011287_p57 hypothetical protein phrog_5168 unknown function unknown function 1 39307 39771
YP_002241643.1 NC_011287_p59 hypothetical protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 40742 41104
YP_002241660.1 NC_011287_p76 hypothetical protein singleton unknown function unknown function 1 49491 49658
YP_002241601.1 NC_011287_p17 hypothetical protein phrog_732 minor tail protein tail 1 16726 17571
YP_002241622.1 NC_011287_p38 hypothetical protein phrog_3693 unknown function unknown function -1 30871 31017
YP_002241639.1 NC_011287_p55 hypothetical protein phrog_2078 unknown function unknown function 1 38925 39077
YP_002241663.1 NC_011287_p79 hypothetical protein phrog_722 unknown function unknown function 1 50262 50540
YP_002241652.1 NC_011287_p68 hypothetical protein phrog_4296 unknown function unknown function 1 47041 47403
YP_002241614.1 NC_011287_p30 LysA phrog_700 endolysin lysis 1 26481 27689
YP_002241606.1 NC_011287_p22 hypothetical protein phrog_2005 minor tail protein tail 1 23529 23783
YP_002241618.1 NC_011287_p34 hypothetical protein phrog_2004 unknown function unknown function 1 29333 29566
YP_002241669.1 NC_011287_p85 hypothetical protein phrog_1545 unknown function unknown function 1 51781 51921
YP_002241654.1 NC_011287_p70 hypothetical protein phrog_6275 unknown function unknown function 1 47700 48080
YP_002241630.1 NC_011287_p46 hypothetical protein phrog_2021 unknown function unknown function 1 35361 35744
YP_002241617.1 NC_011287_p33 hypothetical protein phrog_404 minor tail protein tail 1 28935 29309
YP_002241627.1 NC_011287_p43 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 34450 34683
YP_002241633.1 NC_011287_p49 hypothetical protein phrog_1849 unknown function unknown function 1 36690 36968
YP_002241681.1 NC_011287_p97 hypothetical protein phrog_1385 unknown function unknown function 1 55396 55638
YP_002241610.1 NC_011287_p26 hypothetical protein phrog_411 unknown function unknown function 1 25608 25892
YP_002241586.1 NC_011287_p2 hypothetical protein phrog_9 terminase large subunit head and packaging 1 571 2208
YP_002241679.1 NC_011287_p95 hypothetical protein phrog_3813 unknown function unknown function 1 54729 55001
YP_002241655.1 NC_011287_p71 hypothetical protein phrog_1943 unknown function unknown function 1 48080 48280
YP_002241683.1 NC_011287_p99 hypothetical protein phrog_1693 unknown function unknown function 1 57260 57466
YP_002241637.1 NC_011287_p53 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 38285 38563
YP_002241644.1 NC_011287_p60 DNA methylase N-4 phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 41101 45126
YP_002241587.1 NC_011287_p3 portal phrog_104 portal protein head and packaging 1 2239 3609
YP_002241640.1 NC_011287_p56 hypothetical protein phrog_1834 unknown function unknown function 1 39077 39310
YP_002241659.1 NC_011287_p75 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 49133 49504
YP_002241598.1 NC_011287_p14 tapemeasure protein phrog_1942 tail length tape measure protein tail 1 9486 13181
YP_002241602.1 NC_011287_p18 hypothetical protein phrog_346 minor tail protein tail 1 17568 20105
YP_002241588.1 NC_011287_p4 head assembly phrog_1522 head maturation protease head and packaging 1 3596 4351
YP_002241671.1 NC_011287_p87 hypothetical protein phrog_2278 unknown function unknown function 1 52144 52443
YP_002241609.1 NC_011287_p25 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25262 25459
YP_002241607.1 NC_011287_p23 hypothetical protein phrog_2012 minor tail protein tail 1 23797 24435
YP_002241604.1 NC_011287_p20 hypothetical protein phrog_2106 minor tail protein tail 1 21988 23151
YP_002241616.1 NC_011287_p32 holin phrog_443 holin lysis 1 28705 28938
YP_002241619.1 NC_011287_p35 Exo phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29580 30374
YP_002241649.1 NC_011287_p65 hypothetical protein phrog_6193 unknown function unknown function 1 45805 45927
YP_002241685.1 NC_011287_p101 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 58086 58412
YP_002241657.1 NC_011287_p73 hypothetical protein phrog_647 unknown function unknown function 1 48569 48838
YP_002241664.1 NC_011287_p80 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision 1 50537 50704
YP_002241656.1 NC_011287_p72 hypothetical protein phrog_722 unknown function unknown function 1 48264 48572
YP_002241650.1 NC_011287_p66 hypothetical protein phrog_5500 unknown function unknown function 1 45924 46142
YP_002241603.1 NC_011287_p19 hypothetical protein phrog_382 minor tail protein with lysin activity tail 1 20102 21991
YP_002241597.1 NC_011287_p13 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8532 9083
YP_002241591.1 NC_011287_p7 hypothetical protein phrog_2377 head-tail adaptor Ad1 connector 1 5877 6446
YP_002241632.1 NC_011287_p48 hypothetical protein phrog_1797 unknown function unknown function 1 35926 36615
YP_002241623.1 NC_011287_p39 hypothetical protein phrog_2437 unknown function unknown function -1 31017 31217
YP_002241611.1 NC_011287_p27 hypothetical protein phrog_932 unknown function unknown function 1 25899 26045
YP_002241631.1 NC_011287_p47 hypothetical protein phrog_1816 unknown function unknown function 1 35741 35929
YP_002241665.1 NC_011287_p81 hypothetical protein phrog_3381 unknown function unknown function 1 50751 50969
YP_002241636.1 NC_011287_p52 hypothetical protein phrog_2096 unknown function unknown function 1 37803 38288
YP_002241673.1 NC_011287_p89 hypothetical protein phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 52550 53077
YP_002241638.1 NC_011287_p54 hypothetical protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 38560 38925
YP_002241653.1 NC_011287_p69 hypothetical protein phrog_2080 unknown function unknown function 1 47396 47620
YP_002241645.1 NC_011287_p61 hypothetical protein phrog_7443 unknown function unknown function 1 45123 45344
YP_002241674.1 NC_011287_p90 hypothetical protein phrog_1467 unknown function unknown function 1 53074 53745
YP_002241670.1 NC_011287_p86 hypothetical protein phrog_5186 unknown function unknown function 1 51918 52091
YP_002241676.1 NC_011287_p92 hypothetical protein phrog_1694 unknown function unknown function 1 54058 54216
YP_002241599.1 NC_011287_p15 hypothetical protein phrog_106 minor tail protein tail 1 13182 14891
YP_002241608.1 NC_011287_p24 hypothetical protein phrog_754 minor tail protein tail 1 24432 25256
YP_002241595.1 NC_011287_p11 major tail subunit phrog_476 major tail protein tail 1 7537 8418
YP_002241647.1 NC_011287_p63 hypothetical protein phrog_2070 unknown function unknown function 1 45487 45648
YP_002241672.1 NC_011287_p88 hypothetical protein phrog_6194 unknown function unknown function 1 52440 52553
YP_002241626.1 NC_011287_p42 hypothetical protein phrog_2838 transcriptional repressor transcription regulation -1 33711 34451
YP_002241596.1 NC_011287_p12 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8532 9468
YP_002241634.1 NC_011287_p50 hypothetical protein phrog_658 unknown function unknown function 1 36965 37312
YP_002241624.1 NC_011287_p40 integrase phrog_1 integrase integration and excision 1 31614 32915
YP_002241625.1 NC_011287_p41 hypothetical protein phrog_1948 unknown function unknown function -1 32993 33448