Genomic map of Mycobacterium virus Ramsey (NC_011289)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_011289
Definition
Mycobacterium phage Ramsey, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus.
DB of origin
REFSEQ
Length
58578
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
108
%GC
61.21
Number of singletons
1
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002241836.1 NC_011289_p49 hypothetical protein phrog_1033 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 36477 37286
YP_002241877.1 NC_011289_p90 hypothetical protein phrog_1901 unknown function unknown function 1 52082 52276
YP_002241857.1 NC_011289_p70 hypothetical protein phrog_6506 Arc-like repressor transcription regulation -1 46676 46837
YP_002241854.1 NC_011289_p67 hypothetical protein phrog_6938 unknown function unknown function 1 44853 45221
YP_002241832.1 NC_011289_p45 hypothetical protein phrog_1948 unknown function unknown function -1 33774 34229
YP_002241843.1 NC_011289_p56 hypothetical protein phrog_658 unknown function unknown function 1 39390 39737
YP_002241827.1 NC_011289_p40 hypothetical protein phrog_1839 unknown function unknown function 1 31336 31428
YP_002241798.1 NC_011289_p11 hypothetical protein phrog_813 head-tail adaptor connector 1 6947 7351
YP_002241895.1 NC_011289_p108 hypothetical protein phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 57875 58486
YP_002241847.1 NC_011289_p60 hypothetical protein phrog_2078 unknown function unknown function 1 41003 41158
YP_002241880.1 NC_011289_p93 hypothetical protein phrog_1545 unknown function unknown function 1 52715 52852
YP_002241851.1 NC_011289_p64 HNHc phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 42214 42576
YP_002241817.1 NC_011289_p30 hypothetical protein phrog_747 unknown function unknown function 1 26130 26351
YP_002241803.1 NC_011289_p16 hypothetical protein phrog_106 minor tail protein tail 1 13041 14750
YP_002241801.1 NC_011289_p14 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8388 8939
YP_002241802.1 NC_011289_p15 tapemeasure protein phrog_1942 tail length tape measure protein tail 1 9342 13040
YP_002241800.1 NC_011289_p13 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8388 9324
YP_002241887.1 NC_011289_p100 hypothetical protein phrog_1869 unknown function unknown function 1 54899 55063
YP_002241828.1 NC_011289_p41 hypothetical protein phrog_3693 unknown function unknown function -1 31466 31609
YP_002241799.1 NC_011289_p12 major tail subunit phrog_476 major tail protein tail 1 7460 8269
YP_002241869.1 NC_011289_p82 hypothetical protein phrog_1943 unknown function unknown function 1 50142 50336
YP_002241889.1 NC_011289_p102 hypothetical protein phrog_3813 unknown function unknown function 1 55224 55415
YP_002241873.1 NC_011289_p86 hypothetical protein phrog_647 unknown function unknown function 1 51149 51520
YP_002241856.1 NC_011289_p69 hypothetical protein phrog_116 DNA methyltransferase other 1 45364 46707
YP_002241833.1 NC_011289_p46 hypothetical protein phrog_3949 transcriptional repressor transcription regulation -1 34492 35025
YP_002241825.1 NC_011289_p38 Exo phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 30216 31037
YP_002241890.1 NC_011289_p103 hypothetical protein phrog_1186 unknown function unknown function 1 55412 55813
YP_002241867.1 NC_011289_p80 hypothetical protein phrog_9299 unknown function unknown function 1 49859 49942
YP_002241876.1 NC_011289_p89 hypothetical protein singleton unknown function unknown function 1 51924 52085
YP_002241860.1 NC_011289_p73 hypothetical protein phrog_2070 unknown function unknown function 1 47728 47874
YP_002241840.1 NC_011289_p53 hypothetical protein phrog_1816 unknown function unknown function 1 38235 38426
YP_002241892.1 NC_011289_p105 hypothetical protein phrog_2057 unknown function unknown function 1 56045 56206
YP_002241848.1 NC_011289_p61 hypothetical protein phrog_1834 unknown function unknown function 1 41155 41385
YP_002241885.1 NC_011289_p98 hypothetical protein phrog_1467 unknown function unknown function 1 53930 54568
YP_002241814.1 NC_011289_p27 hypothetical protein phrog_411 unknown function unknown function 1 25472 25756
YP_002241853.1 NC_011289_p66 DNA methylase phrog_67 DNA methyltransferase other 1 43916 44866
YP_002241835.1 NC_011289_p48 hypothetical protein phrog_15279 unknown function unknown function 1 35503 36480
YP_002241879.1 NC_011289_p92 hypothetical protein phrog_1091 unknown function unknown function 1 52536 52715
YP_002241868.1 NC_011289_p81 hypothetical protein phrog_2730 unknown function unknown function 1 49942 50145
YP_002241788.1 NC_011289_p1 hypothetical protein phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 11 373
YP_002241837.1 NC_011289_p50 hypothetical protein phrog_2025 unknown function unknown function 1 37283 37501
YP_002241841.1 NC_011289_p54 hypothetical protein phrog_1797 unknown function unknown function 1 38423 39037
YP_002241893.1 NC_011289_p106 glycosyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 56233 57669
YP_002241819.1 NC_011289_p32 LysA phrog_700 endolysin lysis 1 26518 27765
YP_002241846.1 NC_011289_p59 hypothetical protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 40638 41003
YP_002241792.1 NC_011289_p5 head assembly phrog_193 head maturation protease head and packaging 1 3604 4329
YP_002241845.1 NC_011289_p58 hypothetical protein phrog_2096 unknown function unknown function 1 40141 40641
YP_002241862.1 NC_011289_p75 hypothetical protein phrog_6193 unknown function unknown function 1 48047 48169
YP_002241884.1 NC_011289_p97 hypothetical protein phrog_2247 unknown function unknown function 1 53682 53933
YP_002241790.1 NC_011289_p3 terminase phrog_2 terminase large subunit head and packaging 1 671 2158
YP_002241808.1 NC_011289_p21 hypothetical protein phrog_2106 minor tail protein tail 1 21852 23012
YP_002241793.1 NC_011289_p6 scaffold phrog_4638 head scaffolding protein head and packaging 1 4408 4944
YP_002241849.1 NC_011289_p62 hypothetical protein phrog_2632 unknown function unknown function 1 41382 41642
YP_002241834.1 NC_011289_p47 hypothetical protein phrog_6267 transcriptional repressor transcription regulation 1 35242 35484
YP_002241875.1 NC_011289_p88 hypothetical protein phrog_6727 unknown function unknown function 1 51725 51913
YP_002241864.1 NC_011289_p77 hypothetical protein phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 48381 49286
YP_002241861.1 NC_011289_p74 hypothetical protein phrog_1311 unknown function unknown function 1 47871 48047
YP_002241805.1 NC_011289_p18 hypothetical protein phrog_732 minor tail protein tail 1 16602 17432
YP_002241820.1 NC_011289_p33 HNH endonuclease phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 27746 28345
YP_002241865.1 NC_011289_p78 hypothetical protein phrog_4296 unknown function unknown function 1 49283 49645
YP_002241807.1 NC_011289_p20 hypothetical protein phrog_382 minor tail protein with lysin activity tail 1 19963 21849
YP_002241794.1 NC_011289_p7 capsid phrog_10 major head protein head and packaging 1 5007 5915
YP_002241806.1 NC_011289_p19 hypothetical protein phrog_346 minor tail protein tail 1 17429 19966
YP_002241797.1 NC_011289_p10 hypothetical protein phrog_1929 head-tail connector protein connector 1 6661 6957
YP_002241804.1 NC_011289_p17 hypothetical protein phrog_110 minor tail protein tail 1 14835 16544
YP_002241826.1 NC_011289_p39 hypothetical protein phrog_1791 unknown function unknown function 1 31110 31343
YP_002241870.1 NC_011289_p83 hypothetical protein phrog_1546 unknown function unknown function 1 50333 50683
YP_002241813.1 NC_011289_p26 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25126 25323
YP_002241863.1 NC_011289_p76 hypothetical protein phrog_5500 unknown function unknown function 1 48166 48384
YP_002241894.1 NC_011289_p107 hypothetical protein phrog_1693 unknown function unknown function 1 57684 57878
YP_002241838.1 NC_011289_p51 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 37587 37784
YP_002241795.1 NC_011289_p8 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 5927 6298
YP_002241844.1 NC_011289_p57 WhiB phrog_1333 unknown function unknown function 1 39737 40144
YP_002241878.1 NC_011289_p91 hypothetical protein phrog_6625 unknown function unknown function 1 52276 52539
YP_002241812.1 NC_011289_p25 hypothetical protein phrog_754 minor tail protein tail 1 24297 25121
YP_002241811.1 NC_011289_p24 hypothetical protein phrog_2012 minor tail protein tail 1 23662 24300
YP_002241815.1 NC_011289_p28 hypothetical protein phrog_932 unknown function unknown function 1 25763 25909
YP_002241855.1 NC_011289_p68 hypothetical protein phrog_2704 unknown function unknown function 1 45218 45367
YP_002241816.1 NC_011289_p29 hypothetical protein phrog_1172 unknown function unknown function 1 25906 26058
YP_002241823.1 NC_011289_p36 hypothetical protein phrog_404 minor tail protein tail 1 29600 29971
YP_002241818.1 NC_011289_p31 hypothetical protein phrog_5492 unknown function unknown function 1 26348 26521
YP_002241796.1 NC_011289_p9 hypothetical protein phrog_763 head-tail adaptor connector 1 6295 6624
YP_002241829.1 NC_011289_p42 hypothetical protein phrog_2437 unknown function unknown function -1 31600 31749
YP_002241881.1 NC_011289_p94 hypothetical protein phrog_13993 unknown function unknown function 1 52849 53166
YP_002241871.1 NC_011289_p84 hypothetical protein phrog_1311 unknown function unknown function 1 50680 50823
YP_002241839.1 NC_011289_p52 hypothetical protein phrog_2021 unknown function unknown function 1 37825 38238
YP_002241883.1 NC_011289_p96 hypothetical protein phrog_2278 unknown function unknown function 1 53396 53689
YP_002241809.1 NC_011289_p22 hypothetical protein phrog_240 head protein head and packaging 1 23030 23371
YP_002241866.1 NC_011289_p79 hypothetical protein phrog_2080 unknown function unknown function 1 49638 49862
YP_002241886.1 NC_011289_p99 hypothetical protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 54678 54902
YP_002241852.1 NC_011289_p65 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 42573 43913
YP_002241888.1 NC_011289_p101 hypothetical protein phrog_1694 unknown function unknown function 1 55069 55227
YP_002241831.1 NC_011289_p44 integrase phrog_1 integrase integration and excision 1 32395 33696
YP_002241872.1 NC_011289_p85 hypothetical protein phrog_2142 unknown function unknown function 1 50820 51152
YP_002241824.1 NC_011289_p37 hypothetical protein phrog_2004 unknown function unknown function 1 29996 30229
YP_002241842.1 NC_011289_p55 hypothetical protein phrog_1849 unknown function unknown function 1 39112 39393
YP_002241821.1 NC_011289_p34 LysB phrog_102 endolysin lysis 1 28342 29358
YP_002241850.1 NC_011289_p63 hypothetical protein phrog_3290 single strand annealing protein DNA, RNA and nucleotide metabolism 1 41639 42217
YP_002241882.1 NC_011289_p95 hypothetical protein phrog_8093 unknown function unknown function 1 53163 53342
YP_002241791.1 NC_011289_p4 portal phrog_104 portal protein head and packaging 1 2199 3620
YP_002241858.1 NC_011289_p71 hypothetical protein phrog_8485 unknown function unknown function -1 46830 47207
YP_002241789.1 NC_011289_p2 hypothetical protein phrog_4479 terminase small subunit head and packaging 1 445 699
YP_002241830.1 NC_011289_p43 excisionase phrog_66 excisionase and transcriptional regulator integration and excision -1 31751 31963
YP_002241859.1 NC_011289_p72 hypothetical protein phrog_8611 unknown function unknown function -1 47214 47561
YP_002241874.1 NC_011289_p87 hypothetical protein phrog_2939 unknown function unknown function 1 51517 51732
YP_002241891.1 NC_011289_p104 hypothetical protein phrog_1385 unknown function unknown function 1 55810 56052
YP_002241810.1 NC_011289_p23 hypothetical protein phrog_2005 minor tail protein tail 1 23394 23648
YP_002241822.1 NC_011289_p35 hypothetical protein phrog_443 holin lysis 1 29367 29600