| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011289 |
Definition |
Mycobacterium phage Ramsey, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
58578 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
108 |
%GC |
61.21 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002241836.1 | NC_011289_p49 | hypothetical protein | phrog_1033 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 36477 | 37286 |
| YP_002241877.1 | NC_011289_p90 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 52082 | 52276 |
| YP_002241857.1 | NC_011289_p70 | hypothetical protein | phrog_6506 | Arc-like repressor | transcription regulation | -1 | 46676 | 46837 |
| YP_002241854.1 | NC_011289_p67 | hypothetical protein | phrog_6938 | unknown function | unknown function | 1 | 44853 | 45221 |
| YP_002241832.1 | NC_011289_p45 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33774 | 34229 |
| YP_002241843.1 | NC_011289_p56 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 39390 | 39737 |
| YP_002241827.1 | NC_011289_p40 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 31336 | 31428 |
| YP_002241798.1 | NC_011289_p11 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 6947 | 7351 |
| YP_002241895.1 | NC_011289_p108 | hypothetical protein | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57875 | 58486 |
| YP_002241847.1 | NC_011289_p60 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 41003 | 41158 |
| YP_002241880.1 | NC_011289_p93 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 52715 | 52852 |
| YP_002241851.1 | NC_011289_p64 | HNHc | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42214 | 42576 |
| YP_002241817.1 | NC_011289_p30 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26130 | 26351 |
| YP_002241803.1 | NC_011289_p16 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 13041 | 14750 |
| YP_002241801.1 | NC_011289_p14 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8388 | 8939 |
| YP_002241802.1 | NC_011289_p15 | tapemeasure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9342 | 13040 |
| YP_002241800.1 | NC_011289_p13 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8388 | 9324 |
| YP_002241887.1 | NC_011289_p100 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 54899 | 55063 |
| YP_002241828.1 | NC_011289_p41 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 31466 | 31609 |
| YP_002241799.1 | NC_011289_p12 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7460 | 8269 |
| YP_002241869.1 | NC_011289_p82 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 50142 | 50336 |
| YP_002241889.1 | NC_011289_p102 | hypothetical protein | phrog_3813 | unknown function | unknown function | 1 | 55224 | 55415 |
| YP_002241873.1 | NC_011289_p86 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 51149 | 51520 |
| YP_002241856.1 | NC_011289_p69 | hypothetical protein | phrog_116 | DNA methyltransferase | other | 1 | 45364 | 46707 |
| YP_002241833.1 | NC_011289_p46 | hypothetical protein | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 34492 | 35025 |
| YP_002241825.1 | NC_011289_p38 | Exo | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 30216 | 31037 |
| YP_002241890.1 | NC_011289_p103 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 55412 | 55813 |
| YP_002241867.1 | NC_011289_p80 | hypothetical protein | phrog_9299 | unknown function | unknown function | 1 | 49859 | 49942 |
| YP_002241876.1 | NC_011289_p89 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51924 | 52085 |
| YP_002241860.1 | NC_011289_p73 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 47728 | 47874 |
| YP_002241840.1 | NC_011289_p53 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 38235 | 38426 |
| YP_002241892.1 | NC_011289_p105 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 56045 | 56206 |
| YP_002241848.1 | NC_011289_p61 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 41155 | 41385 |
| YP_002241885.1 | NC_011289_p98 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 53930 | 54568 |
| YP_002241814.1 | NC_011289_p27 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25472 | 25756 |
| YP_002241853.1 | NC_011289_p66 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 43916 | 44866 |
| YP_002241835.1 | NC_011289_p48 | hypothetical protein | phrog_15279 | unknown function | unknown function | 1 | 35503 | 36480 |
| YP_002241879.1 | NC_011289_p92 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 52536 | 52715 |
| YP_002241868.1 | NC_011289_p81 | hypothetical protein | phrog_2730 | unknown function | unknown function | 1 | 49942 | 50145 |
| YP_002241788.1 | NC_011289_p1 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11 | 373 |
| YP_002241837.1 | NC_011289_p50 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 37283 | 37501 |
| YP_002241841.1 | NC_011289_p54 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 38423 | 39037 |
| YP_002241893.1 | NC_011289_p106 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56233 | 57669 |
| YP_002241819.1 | NC_011289_p32 | LysA | phrog_700 | endolysin | lysis | 1 | 26518 | 27765 |
| YP_002241846.1 | NC_011289_p59 | hypothetical protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40638 | 41003 |
| YP_002241792.1 | NC_011289_p5 | head assembly | phrog_193 | head maturation protease | head and packaging | 1 | 3604 | 4329 |
| YP_002241845.1 | NC_011289_p58 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 40141 | 40641 |
| YP_002241862.1 | NC_011289_p75 | hypothetical protein | phrog_6193 | unknown function | unknown function | 1 | 48047 | 48169 |
| YP_002241884.1 | NC_011289_p97 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 53682 | 53933 |
| YP_002241790.1 | NC_011289_p3 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 671 | 2158 |
| YP_002241808.1 | NC_011289_p21 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21852 | 23012 |
| YP_002241793.1 | NC_011289_p6 | scaffold | phrog_4638 | head scaffolding protein | head and packaging | 1 | 4408 | 4944 |
| YP_002241849.1 | NC_011289_p62 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 41382 | 41642 |
| YP_002241834.1 | NC_011289_p47 | hypothetical protein | phrog_6267 | transcriptional repressor | transcription regulation | 1 | 35242 | 35484 |
| YP_002241875.1 | NC_011289_p88 | hypothetical protein | phrog_6727 | unknown function | unknown function | 1 | 51725 | 51913 |
| YP_002241864.1 | NC_011289_p77 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 48381 | 49286 |
| YP_002241861.1 | NC_011289_p74 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 47871 | 48047 |
| YP_002241805.1 | NC_011289_p18 | hypothetical protein | phrog_732 | minor tail protein | tail | 1 | 16602 | 17432 |
| YP_002241820.1 | NC_011289_p33 | HNH endonuclease | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 27746 | 28345 |
| YP_002241865.1 | NC_011289_p78 | hypothetical protein | phrog_4296 | unknown function | unknown function | 1 | 49283 | 49645 |
| YP_002241807.1 | NC_011289_p20 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19963 | 21849 |
| YP_002241794.1 | NC_011289_p7 | capsid | phrog_10 | major head protein | head and packaging | 1 | 5007 | 5915 |
| YP_002241806.1 | NC_011289_p19 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 17429 | 19966 |
| YP_002241797.1 | NC_011289_p10 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6661 | 6957 |
| YP_002241804.1 | NC_011289_p17 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 14835 | 16544 |
| YP_002241826.1 | NC_011289_p39 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 31110 | 31343 |
| YP_002241870.1 | NC_011289_p83 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 50333 | 50683 |
| YP_002241813.1 | NC_011289_p26 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25126 | 25323 |
| YP_002241863.1 | NC_011289_p76 | hypothetical protein | phrog_5500 | unknown function | unknown function | 1 | 48166 | 48384 |
| YP_002241894.1 | NC_011289_p107 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 57684 | 57878 |
| YP_002241838.1 | NC_011289_p51 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 37587 | 37784 |
| YP_002241795.1 | NC_011289_p8 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 5927 | 6298 |
| YP_002241844.1 | NC_011289_p57 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 39737 | 40144 |
| YP_002241878.1 | NC_011289_p91 | hypothetical protein | phrog_6625 | unknown function | unknown function | 1 | 52276 | 52539 |
| YP_002241812.1 | NC_011289_p25 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24297 | 25121 |
| YP_002241811.1 | NC_011289_p24 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23662 | 24300 |
| YP_002241815.1 | NC_011289_p28 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25763 | 25909 |
| YP_002241855.1 | NC_011289_p68 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 45218 | 45367 |
| YP_002241816.1 | NC_011289_p29 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 25906 | 26058 |
| YP_002241823.1 | NC_011289_p36 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 29600 | 29971 |
| YP_002241818.1 | NC_011289_p31 | hypothetical protein | phrog_5492 | unknown function | unknown function | 1 | 26348 | 26521 |
| YP_002241796.1 | NC_011289_p9 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6295 | 6624 |
| YP_002241829.1 | NC_011289_p42 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 31600 | 31749 |
| YP_002241881.1 | NC_011289_p94 | hypothetical protein | phrog_13993 | unknown function | unknown function | 1 | 52849 | 53166 |
| YP_002241871.1 | NC_011289_p84 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 50680 | 50823 |
| YP_002241839.1 | NC_011289_p52 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 37825 | 38238 |
| YP_002241883.1 | NC_011289_p96 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 53396 | 53689 |
| YP_002241809.1 | NC_011289_p22 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23030 | 23371 |
| YP_002241866.1 | NC_011289_p79 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 49638 | 49862 |
| YP_002241886.1 | NC_011289_p99 | hypothetical protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 54678 | 54902 |
| YP_002241852.1 | NC_011289_p65 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 42573 | 43913 |
| YP_002241888.1 | NC_011289_p101 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 55069 | 55227 |
| YP_002241831.1 | NC_011289_p44 | integrase | phrog_1 | integrase | integration and excision | 1 | 32395 | 33696 |
| YP_002241872.1 | NC_011289_p85 | hypothetical protein | phrog_2142 | unknown function | unknown function | 1 | 50820 | 51152 |
| YP_002241824.1 | NC_011289_p37 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29996 | 30229 |
| YP_002241842.1 | NC_011289_p55 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 39112 | 39393 |
| YP_002241821.1 | NC_011289_p34 | LysB | phrog_102 | endolysin | lysis | 1 | 28342 | 29358 |
| YP_002241850.1 | NC_011289_p63 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 41639 | 42217 |
| YP_002241882.1 | NC_011289_p95 | hypothetical protein | phrog_8093 | unknown function | unknown function | 1 | 53163 | 53342 |
| YP_002241791.1 | NC_011289_p4 | portal | phrog_104 | portal protein | head and packaging | 1 | 2199 | 3620 |
| YP_002241858.1 | NC_011289_p71 | hypothetical protein | phrog_8485 | unknown function | unknown function | -1 | 46830 | 47207 |
| YP_002241789.1 | NC_011289_p2 | hypothetical protein | phrog_4479 | terminase small subunit | head and packaging | 1 | 445 | 699 |
| YP_002241830.1 | NC_011289_p43 | excisionase | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 31751 | 31963 |
| YP_002241859.1 | NC_011289_p72 | hypothetical protein | phrog_8611 | unknown function | unknown function | -1 | 47214 | 47561 |
| YP_002241874.1 | NC_011289_p87 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 51517 | 51732 |
| YP_002241891.1 | NC_011289_p104 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 55810 | 56052 |
| YP_002241810.1 | NC_011289_p23 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23394 | 23648 |
| YP_002241822.1 | NC_011289_p35 | hypothetical protein | phrog_443 | holin | lysis | 1 | 29367 | 29600 |