Genomic map of Listeria phage P40 (NC_011308)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_011308
Definition
Listeria phage P40, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
35638
Host Name
Listeria
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
39.25
Number of singletons
29
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002261465.1 NC_011308_p49 hypothetical protein phrog_27314 unknown function unknown function 1 31611 31886
YP_002261476.1 NC_011308_p60 hypothetical protein singleton unknown function unknown function 1 34660 34896
YP_002261423.1 NC_011308_p7 hypothetical protein phrog_1236 head protein head and packaging 1 6543 7079
YP_002261444.1 NC_011308_p28 hypothetical protein phrog_392 metal-dependent hydrolase other 1 19633 20256
YP_002261458.1 NC_011308_p42 hypothetical protein phrog_121 unknown function unknown function 1 29374 29925
YP_002261462.1 NC_011308_p46 hypothetical protein singleton unknown function unknown function 1 30685 30843
YP_002261445.1 NC_011308_p29 hypothetical protein phrog_674 unknown function unknown function 1 20268 21017
YP_002261470.1 NC_011308_p54 hypothetical protein singleton unknown function unknown function 1 32578 32829
YP_002261452.1 NC_011308_p36 hypothetical protein singleton unknown function unknown function 1 27062 27247
YP_002261475.1 NC_011308_p59 hypothetical protein phrog_1494 unknown function unknown function 1 34520 34705
YP_002261478.1 NC_011308_p62 hypothetical protein singleton unknown function unknown function 1 35366 35527
YP_002261428.1 NC_011308_p12 hypothetical protein phrog_1021 unknown function unknown function 1 9371 9808
YP_002261474.1 NC_011308_p58 hypothetical protein singleton unknown function unknown function 1 33737 34504
YP_002261426.1 NC_011308_p10 hypothetical protein phrog_957 head protein head and packaging 1 7855 8322
YP_002261447.1 NC_011308_p31 DNA polymerase phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism 1 21827 23833
YP_002261460.1 NC_011308_p44 hypothetical protein singleton unknown function unknown function 1 30136 30540
YP_002261448.1 NC_011308_p32 primase phrog_864 DNA primase DNA, RNA and nucleotide metabolism 1 23846 25753
YP_002261443.1 NC_011308_p27 hypothetical protein singleton unknown function unknown function 1 19265 19627
YP_002261450.1 NC_011308_p34 hypothetical protein singleton unknown function unknown function 1 25983 26411
YP_002261424.1 NC_011308_p8 hypothetical protein phrog_1059 head-tail adaptor connector 1 7072 7419
YP_002261453.1 NC_011308_p37 hypothetical protein singleton unknown function unknown function 1 27226 27447
YP_002261430.1 NC_011308_p14 tail tape measure protein phrog_58 tail length tape measure protein tail 1 10160 12046
YP_002261441.1 NC_011308_p25 hypothetical protein singleton unknown function unknown function 1 17927 18085
YP_002261433.1 NC_011308_p17 hypothetical protein phrog_6779 tail protein tail 1 14486 15325
YP_002261418.1 NC_011308_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 781 2073
YP_002261457.1 NC_011308_p41 hypothetical protein phrog_34622 unknown function unknown function 1 28854 29384
YP_002261467.1 NC_011308_p51 hypothetical protein singleton unknown function unknown function 1 32027 32230
YP_002261466.1 NC_011308_p50 hypothetical protein singleton unknown function unknown function 1 31893 32024
YP_002261427.1 NC_011308_p11 hypothetical protein phrog_885 major tail protein tail 1 8323 9285
YP_002261421.1 NC_011308_p5 hypothetical protein phrog_194 head scaffolding protein head and packaging 1 4960 5556
YP_002261459.1 NC_011308_p43 hypothetical protein singleton unknown function unknown function 1 29926 30135
YP_002261429.1 NC_011308_p13 hypothetical protein phrog_1294 peptide methionine sulfoxide reductase other 1 9862 10125
YP_002261420.1 NC_011308_p4 minor head protein phrog_115 minor head protein head and packaging 1 3930 4841
YP_002261442.1 NC_011308_p26 endolysin phrog_291 endolysin lysis 1 18076 19110
YP_002261471.1 NC_011308_p55 hypothetical protein singleton unknown function unknown function 1 32810 33103
YP_002261477.1 NC_011308_p61 hypothetical protein phrog_1494 unknown function unknown function 1 34889 35062
YP_002261455.1 NC_011308_p39 hypothetical protein singleton unknown function unknown function 1 28233 28673
YP_002261463.1 NC_011308_p47 hypothetical protein phrog_27314 unknown function unknown function 1 30869 31150
YP_002261469.1 NC_011308_p53 hypothetical protein singleton unknown function unknown function 1 32373 32588
YP_002261451.1 NC_011308_p35 hypothetical protein phrog_25554 unknown function unknown function 1 26526 27065
YP_002261468.1 NC_011308_p52 hypothetical protein singleton unknown function unknown function 1 32227 32376
YP_002261446.1 NC_011308_p30 hypothetical protein phrog_6479 unknown function unknown function 1 21038 21742
YP_002261461.1 NC_011308_p45 hypothetical protein singleton unknown function unknown function 1 30537 30707
YP_002261425.1 NC_011308_p9 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 7394 7858
YP_002261422.1 NC_011308_p6 hypothetical protein phrog_422 major head protein head and packaging 1 5582 6475
YP_002261472.1 NC_011308_p56 hypothetical protein singleton unknown function unknown function 1 33075 33371
YP_002261449.1 NC_011308_p33 hypothetical protein singleton unknown function unknown function 1 25754 25999
YP_002261438.1 NC_011308_p22 hypothetical protein singleton unknown function unknown function 1 16937 17317
YP_002261435.1 NC_011308_p19 hypothetical protein singleton unknown function unknown function 1 15947 16096
YP_002261419.1 NC_011308_p3 portal protein phrog_64 portal protein head and packaging 1 2322 3914
YP_002261432.1 NC_011308_p16 hypothetical protein phrog_7064 tail protein tail 1 13325 14470
YP_002261454.1 NC_011308_p38 hypothetical protein phrog_236 nucleotide kinase other 1 27444 28220
YP_002261456.1 NC_011308_p40 hypothetical protein singleton unknown function unknown function 1 28663 28857
YP_002261437.1 NC_011308_p21 hypothetical protein singleton unknown function unknown function 1 16780 16971
YP_002261434.1 NC_011308_p18 holin phrog_199 holin lysis 1 15487 15942
YP_002261417.1 NC_011308_p1 terminase small subunit singleton unknown function unknown function 1 20 781
YP_002261439.1 NC_011308_p23 hypothetical protein singleton unknown function unknown function 1 17317 17457
YP_002261431.1 NC_011308_p15 hypothetical protein phrog_13564 minor tail protein tail 1 12046 13332
YP_002261436.1 NC_011308_p20 hypothetical protein phrog_35662 unknown function unknown function 1 16305 16592
YP_002261473.1 NC_011308_p57 hypothetical protein singleton unknown function unknown function 1 33368 33652
YP_002261464.1 NC_011308_p48 hypothetical protein phrog_27314 unknown function unknown function 1 31175 31447
YP_002261440.1 NC_011308_p24 hypothetical protein singleton unknown function unknown function 1 17764 17919