| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011308 |
Definition |
Listeria phage P40, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
35638 |
Host Name |
Listeria |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
39.25 |
Number of singletons |
29 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002261465.1 | NC_011308_p49 | hypothetical protein | phrog_27314 | unknown function | unknown function | 1 | 31611 | 31886 |
| YP_002261476.1 | NC_011308_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34660 | 34896 |
| YP_002261423.1 | NC_011308_p7 | hypothetical protein | phrog_1236 | head protein | head and packaging | 1 | 6543 | 7079 |
| YP_002261444.1 | NC_011308_p28 | hypothetical protein | phrog_392 | metal-dependent hydrolase | other | 1 | 19633 | 20256 |
| YP_002261458.1 | NC_011308_p42 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 29374 | 29925 |
| YP_002261462.1 | NC_011308_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30685 | 30843 |
| YP_002261445.1 | NC_011308_p29 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 20268 | 21017 |
| YP_002261470.1 | NC_011308_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32578 | 32829 |
| YP_002261452.1 | NC_011308_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27062 | 27247 |
| YP_002261475.1 | NC_011308_p59 | hypothetical protein | phrog_1494 | unknown function | unknown function | 1 | 34520 | 34705 |
| YP_002261478.1 | NC_011308_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35366 | 35527 |
| YP_002261428.1 | NC_011308_p12 | hypothetical protein | phrog_1021 | unknown function | unknown function | 1 | 9371 | 9808 |
| YP_002261474.1 | NC_011308_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33737 | 34504 |
| YP_002261426.1 | NC_011308_p10 | hypothetical protein | phrog_957 | head protein | head and packaging | 1 | 7855 | 8322 |
| YP_002261447.1 | NC_011308_p31 | DNA polymerase | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 21827 | 23833 |
| YP_002261460.1 | NC_011308_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30136 | 30540 |
| YP_002261448.1 | NC_011308_p32 | primase | phrog_864 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 23846 | 25753 |
| YP_002261443.1 | NC_011308_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19265 | 19627 |
| YP_002261450.1 | NC_011308_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25983 | 26411 |
| YP_002261424.1 | NC_011308_p8 | hypothetical protein | phrog_1059 | head-tail adaptor | connector | 1 | 7072 | 7419 |
| YP_002261453.1 | NC_011308_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27226 | 27447 |
| YP_002261430.1 | NC_011308_p14 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 10160 | 12046 |
| YP_002261441.1 | NC_011308_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17927 | 18085 |
| YP_002261433.1 | NC_011308_p17 | hypothetical protein | phrog_6779 | tail protein | tail | 1 | 14486 | 15325 |
| YP_002261418.1 | NC_011308_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 781 | 2073 |
| YP_002261457.1 | NC_011308_p41 | hypothetical protein | phrog_34622 | unknown function | unknown function | 1 | 28854 | 29384 |
| YP_002261467.1 | NC_011308_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32027 | 32230 |
| YP_002261466.1 | NC_011308_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31893 | 32024 |
| YP_002261427.1 | NC_011308_p11 | hypothetical protein | phrog_885 | major tail protein | tail | 1 | 8323 | 9285 |
| YP_002261421.1 | NC_011308_p5 | hypothetical protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 4960 | 5556 |
| YP_002261459.1 | NC_011308_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29926 | 30135 |
| YP_002261429.1 | NC_011308_p13 | hypothetical protein | phrog_1294 | peptide methionine sulfoxide reductase | other | 1 | 9862 | 10125 |
| YP_002261420.1 | NC_011308_p4 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 3930 | 4841 |
| YP_002261442.1 | NC_011308_p26 | endolysin | phrog_291 | endolysin | lysis | 1 | 18076 | 19110 |
| YP_002261471.1 | NC_011308_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32810 | 33103 |
| YP_002261477.1 | NC_011308_p61 | hypothetical protein | phrog_1494 | unknown function | unknown function | 1 | 34889 | 35062 |
| YP_002261455.1 | NC_011308_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28233 | 28673 |
| YP_002261463.1 | NC_011308_p47 | hypothetical protein | phrog_27314 | unknown function | unknown function | 1 | 30869 | 31150 |
| YP_002261469.1 | NC_011308_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32373 | 32588 |
| YP_002261451.1 | NC_011308_p35 | hypothetical protein | phrog_25554 | unknown function | unknown function | 1 | 26526 | 27065 |
| YP_002261468.1 | NC_011308_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32227 | 32376 |
| YP_002261446.1 | NC_011308_p30 | hypothetical protein | phrog_6479 | unknown function | unknown function | 1 | 21038 | 21742 |
| YP_002261461.1 | NC_011308_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30537 | 30707 |
| YP_002261425.1 | NC_011308_p9 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7394 | 7858 |
| YP_002261422.1 | NC_011308_p6 | hypothetical protein | phrog_422 | major head protein | head and packaging | 1 | 5582 | 6475 |
| YP_002261472.1 | NC_011308_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33075 | 33371 |
| YP_002261449.1 | NC_011308_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25754 | 25999 |
| YP_002261438.1 | NC_011308_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16937 | 17317 |
| YP_002261435.1 | NC_011308_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15947 | 16096 |
| YP_002261419.1 | NC_011308_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 2322 | 3914 |
| YP_002261432.1 | NC_011308_p16 | hypothetical protein | phrog_7064 | tail protein | tail | 1 | 13325 | 14470 |
| YP_002261454.1 | NC_011308_p38 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 27444 | 28220 |
| YP_002261456.1 | NC_011308_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28663 | 28857 |
| YP_002261437.1 | NC_011308_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16780 | 16971 |
| YP_002261434.1 | NC_011308_p18 | holin | phrog_199 | holin | lysis | 1 | 15487 | 15942 |
| YP_002261417.1 | NC_011308_p1 | terminase small subunit | singleton | unknown function | unknown function | 1 | 20 | 781 |
| YP_002261439.1 | NC_011308_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17317 | 17457 |
| YP_002261431.1 | NC_011308_p15 | hypothetical protein | phrog_13564 | minor tail protein | tail | 1 | 12046 | 13332 |
| YP_002261436.1 | NC_011308_p20 | hypothetical protein | phrog_35662 | unknown function | unknown function | 1 | 16305 | 16592 |
| YP_002261473.1 | NC_011308_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33368 | 33652 |
| YP_002261464.1 | NC_011308_p48 | hypothetical protein | phrog_27314 | unknown function | unknown function | 1 | 31175 | 31447 |
| YP_002261440.1 | NC_011308_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17764 | 17919 |