| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011318 |
Definition |
Clostridium phage 39-O, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
38753 |
Host Name |
Clostridium perfringens |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
30.42 |
Number of singletons |
10 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002265412.1 | NC_011318_p4 | portal | phrog_64 | portal protein | head and packaging | 1 | 2060 | 3415 |
| YP_002265450.1 | NC_011318_p42 | hypothetical protein | phrog_18552 | unknown function | unknown function | 1 | 28912 | 29163 |
| YP_002265459.1 | NC_011318_p51 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 33537 | 34199 |
| YP_002265419.1 | NC_011318_p11 | hypothetical protein | singleton | unknown function | unknown function | -1 | 8154 | 8324 |
| YP_002265438.1 | NC_011318_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25293 | 25583 |
| YP_002265456.1 | NC_011318_p48 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32218 | 32808 |
| YP_002265467.1 | NC_011318_p59 | hypothetical protein | phrog_34330 | unknown function | unknown function | 1 | 37581 | 37817 |
| YP_002265446.1 | NC_011318_p38 | hypothetical protein | phrog_27146 | unknown function | unknown function | 1 | 27794 | 27988 |
| YP_002265415.1 | NC_011318_p7 | hypothetical protein | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 4994 | 5644 |
| YP_002265463.1 | NC_011318_p55 | hypothetical protein | phrog_18098 | unknown function | unknown function | 1 | 35341 | 36309 |
| YP_002265430.1 | NC_011318_p22 | tape measure protein | phrog_991 | tail length tape measure protein | tail | 1 | 15578 | 17920 |
| YP_002265411.1 | NC_011318_p3 | hypothetical protein | phrog_5839 | unknown function | unknown function | 1 | 1687 | 2058 |
| YP_002265464.1 | NC_011318_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36309 | 36797 |
| YP_002265452.1 | NC_011318_p44 | hypothetical protein | phrog_17454 | unknown function | unknown function | 1 | 29980 | 30216 |
| YP_002265461.1 | NC_011318_p53 | hypothetical protein | phrog_27657 | unknown function | unknown function | 1 | 34700 | 34945 |
| YP_002265458.1 | NC_011318_p50 | hypothetical protein | phrog_16715 | unknown function | unknown function | 1 | 33370 | 33537 |
| YP_002265422.1 | NC_011318_p14 | Gp6-like protein | phrog_267 | major head protein | head and packaging | 1 | 9608 | 10438 |
| YP_002265431.1 | NC_011318_p23 | antirepressor | phrog_463 | anti-repressor | transcription regulation | 1 | 18005 | 18676 |
| YP_002265453.1 | NC_011318_p45 | hypothetical protein | phrog_17879 | unknown function | unknown function | 1 | 30209 | 30736 |
| YP_002265416.1 | NC_011318_p8 | hypothetical protein | phrog_22191 | unknown function | unknown function | 1 | 6111 | 6248 |
| YP_002265421.1 | NC_011318_p13 | fibronectin autolysin | phrog_194 | head scaffolding protein | head and packaging | 1 | 8995 | 9585 |
| YP_002265417.1 | NC_011318_p9 | hypothetical protein | phrog_16621 | unknown function | unknown function | 1 | 6751 | 6879 |
| YP_002265469.1 | NC_011318_p61 | hypothetical protein | phrog_31157 | unknown function | unknown function | 1 | 38022 | 38141 |
| YP_002265424.1 | NC_011318_p16 | hypothetical protein | phrog_1236 | head protein | head and packaging | 1 | 13091 | 13570 |
| YP_002265418.1 | NC_011318_p10 | integrase | phrog_1313 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 6869 | 8152 |
| YP_002265457.1 | NC_011318_p49 | hypothetical protein | phrog_3490 | ERCC4-type nuclease | DNA, RNA and nucleotide metabolism | 1 | 32808 | 33377 |
| YP_002265434.1 | NC_011318_p26 | gp58-like protein | singleton | unknown function | unknown function | 1 | 22255 | 24108 |
| YP_002265426.1 | NC_011318_p18 | hypothetical protein | phrog_17405 | head protein | head and packaging | 1 | 13990 | 14301 |
| YP_002265435.1 | NC_011318_p27 | amidase-hydrolase | phrog_435 | endolysin | lysis | 1 | 24142 | 24783 |
| YP_002265432.1 | NC_011318_p24 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 18734 | 19429 |
| YP_002265462.1 | NC_011318_p54 | XRE-like regulator | phrog_5558 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 34929 | 35255 |
| YP_002265443.1 | NC_011318_p35 | hypothetical protein | phrog_17096 | unknown function | unknown function | 1 | 27230 | 27403 |
| YP_002265449.1 | NC_011318_p41 | hypothetical protein | phrog_17646 | unknown function | unknown function | 1 | 28574 | 28795 |
| YP_002265413.1 | NC_011318_p5 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 3456 | 4676 |
| YP_002265442.1 | NC_011318_p34 | hypothetical protein | phrog_17736 | unknown function | unknown function | 1 | 26994 | 27230 |
| YP_002265447.1 | NC_011318_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27982 | 28338 |
| YP_002265423.1 | NC_011318_p15 | pre-neck/exonuclease | phrog_23208 | virion structural protein | head and packaging | 1 | 10576 | 13098 |
| YP_002265460.1 | NC_011318_p52 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 34317 | 34688 |
| YP_002265429.1 | NC_011318_p21 | ATPase component | singleton | unknown function | unknown function | 1 | 15314 | 15577 |
| YP_002265466.1 | NC_011318_p58 | hypothetical protein | phrog_2245 | nucleoside triphosphate pyrophosphohydrolase | other | 1 | 37251 | 37580 |
| YP_002265470.1 | NC_011318_p62 | hypothetical protein | phrog_17705 | unknown function | unknown function | 1 | 38125 | 38751 |
| YP_002265455.1 | NC_011318_p47 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 31668 | 32159 |
| YP_002265465.1 | NC_011318_p57 | cytolysin | singleton | unknown function | unknown function | 1 | 36801 | 37184 |
| YP_002265468.1 | NC_011318_p60 | hypothetical protein | phrog_18244 | unknown function | unknown function | 1 | 37807 | 38022 |
| YP_002265445.1 | NC_011318_p37 | hypothetical protein | phrog_18689 | unknown function | unknown function | 1 | 27532 | 27792 |
| YP_002265444.1 | NC_011318_p36 | hypothetical protein | phrog_9584 | unknown function | unknown function | 1 | 27393 | 27539 |
| YP_002265433.1 | NC_011318_p25 | endopeptidase-endolysin | phrog_7043 | tail protein | tail | 1 | 19432 | 22254 |
| YP_002265437.1 | NC_011318_p29 | hypothetical protein | phrog_1193 | hemolysin | other | 1 | 25023 | 25283 |
| YP_002265425.1 | NC_011318_p17 | hypothetical protein | phrog_17977 | unknown function | unknown function | 1 | 13564 | 13899 |
| YP_002265427.1 | NC_011318_p19 | hypothetical protein | phrog_885 | major tail protein | tail | 1 | 14313 | 14912 |
| YP_002265410.1 | NC_011318_p2 | large terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 398 | 1675 |
| YP_002265440.1 | NC_011318_p32 | antirepressor | phrog_14211 | anti-repressor | transcription regulation | 1 | 26036 | 26740 |
| YP_002265409.1 | NC_011318_p1 | small terminase | phrog_606 | terminase small subunit | head and packaging | 1 | 79 | 426 |
| YP_002265451.1 | NC_011318_p43 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 29165 | 29911 |
| YP_002265441.1 | NC_011318_p33 | hypothetical protein | phrog_19685 | unknown function | unknown function | 1 | 26837 | 27010 |
| YP_002265448.1 | NC_011318_p40 | hypothetical protein | phrog_18566 | unknown function | unknown function | 1 | 28443 | 28568 |
| YP_002265414.1 | NC_011318_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4673 | 4909 |
| YP_002265454.1 | NC_011318_p46 | hypothetical protein | phrog_18368 | unknown function | unknown function | 1 | 31447 | 31668 |
| YP_002265436.1 | NC_011318_p28 | holin | phrog_297 | holin | lysis | 1 | 24795 | 25022 |
| YP_002265428.1 | NC_011318_p20 | peptidase-colicin | phrog_18646 | unknown function | unknown function | 1 | 14925 | 15272 |
| YP_002265420.1 | NC_011318_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8807 | 8995 |
| YP_002265439.1 | NC_011318_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25653 | 25913 |