Genomic map of Clostridium phage phiCP39-O (NC_011318)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_011318
Definition
Clostridium phage 39-O, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
38753
Host Name
Clostridium perfringens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
30.42
Number of singletons
10
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002265412.1 NC_011318_p4 portal phrog_64 portal protein head and packaging 1 2060 3415
YP_002265450.1 NC_011318_p42 hypothetical protein phrog_18552 unknown function unknown function 1 28912 29163
YP_002265459.1 NC_011318_p51 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 33537 34199
YP_002265419.1 NC_011318_p11 hypothetical protein singleton unknown function unknown function -1 8154 8324
YP_002265438.1 NC_011318_p30 hypothetical protein singleton unknown function unknown function 1 25293 25583
YP_002265456.1 NC_011318_p48 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 32218 32808
YP_002265467.1 NC_011318_p59 hypothetical protein phrog_34330 unknown function unknown function 1 37581 37817
YP_002265446.1 NC_011318_p38 hypothetical protein phrog_27146 unknown function unknown function 1 27794 27988
YP_002265415.1 NC_011318_p7 hypothetical protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism 1 4994 5644
YP_002265463.1 NC_011318_p55 hypothetical protein phrog_18098 unknown function unknown function 1 35341 36309
YP_002265430.1 NC_011318_p22 tape measure protein phrog_991 tail length tape measure protein tail 1 15578 17920
YP_002265411.1 NC_011318_p3 hypothetical protein phrog_5839 unknown function unknown function 1 1687 2058
YP_002265464.1 NC_011318_p56 hypothetical protein singleton unknown function unknown function 1 36309 36797
YP_002265452.1 NC_011318_p44 hypothetical protein phrog_17454 unknown function unknown function 1 29980 30216
YP_002265461.1 NC_011318_p53 hypothetical protein phrog_27657 unknown function unknown function 1 34700 34945
YP_002265458.1 NC_011318_p50 hypothetical protein phrog_16715 unknown function unknown function 1 33370 33537
YP_002265422.1 NC_011318_p14 Gp6-like protein phrog_267 major head protein head and packaging 1 9608 10438
YP_002265431.1 NC_011318_p23 antirepressor phrog_463 anti-repressor transcription regulation 1 18005 18676
YP_002265453.1 NC_011318_p45 hypothetical protein phrog_17879 unknown function unknown function 1 30209 30736
YP_002265416.1 NC_011318_p8 hypothetical protein phrog_22191 unknown function unknown function 1 6111 6248
YP_002265421.1 NC_011318_p13 fibronectin autolysin phrog_194 head scaffolding protein head and packaging 1 8995 9585
YP_002265417.1 NC_011318_p9 hypothetical protein phrog_16621 unknown function unknown function 1 6751 6879
YP_002265469.1 NC_011318_p61 hypothetical protein phrog_31157 unknown function unknown function 1 38022 38141
YP_002265424.1 NC_011318_p16 hypothetical protein phrog_1236 head protein head and packaging 1 13091 13570
YP_002265418.1 NC_011318_p10 integrase phrog_1313 DNA helicase DNA, RNA and nucleotide metabolism 1 6869 8152
YP_002265457.1 NC_011318_p49 hypothetical protein phrog_3490 ERCC4-type nuclease DNA, RNA and nucleotide metabolism 1 32808 33377
YP_002265434.1 NC_011318_p26 gp58-like protein singleton unknown function unknown function 1 22255 24108
YP_002265426.1 NC_011318_p18 hypothetical protein phrog_17405 head protein head and packaging 1 13990 14301
YP_002265435.1 NC_011318_p27 amidase-hydrolase phrog_435 endolysin lysis 1 24142 24783
YP_002265432.1 NC_011318_p24 tail protein phrog_33 distal tail protein Dit tail 1 18734 19429
YP_002265462.1 NC_011318_p54 XRE-like regulator phrog_5558 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 34929 35255
YP_002265443.1 NC_011318_p35 hypothetical protein phrog_17096 unknown function unknown function 1 27230 27403
YP_002265449.1 NC_011318_p41 hypothetical protein phrog_17646 unknown function unknown function 1 28574 28795
YP_002265413.1 NC_011318_p5 minor head protein phrog_115 minor head protein head and packaging 1 3456 4676
YP_002265442.1 NC_011318_p34 hypothetical protein phrog_17736 unknown function unknown function 1 26994 27230
YP_002265447.1 NC_011318_p39 hypothetical protein singleton unknown function unknown function 1 27982 28338
YP_002265423.1 NC_011318_p15 pre-neck/exonuclease phrog_23208 virion structural protein head and packaging 1 10576 13098
YP_002265460.1 NC_011318_p52 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 34317 34688
YP_002265429.1 NC_011318_p21 ATPase component singleton unknown function unknown function 1 15314 15577
YP_002265466.1 NC_011318_p58 hypothetical protein phrog_2245 nucleoside triphosphate pyrophosphohydrolase other 1 37251 37580
YP_002265470.1 NC_011318_p62 hypothetical protein phrog_17705 unknown function unknown function 1 38125 38751
YP_002265455.1 NC_011318_p47 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 31668 32159
YP_002265465.1 NC_011318_p57 cytolysin singleton unknown function unknown function 1 36801 37184
YP_002265468.1 NC_011318_p60 hypothetical protein phrog_18244 unknown function unknown function 1 37807 38022
YP_002265445.1 NC_011318_p37 hypothetical protein phrog_18689 unknown function unknown function 1 27532 27792
YP_002265444.1 NC_011318_p36 hypothetical protein phrog_9584 unknown function unknown function 1 27393 27539
YP_002265433.1 NC_011318_p25 endopeptidase-endolysin phrog_7043 tail protein tail 1 19432 22254
YP_002265437.1 NC_011318_p29 hypothetical protein phrog_1193 hemolysin other 1 25023 25283
YP_002265425.1 NC_011318_p17 hypothetical protein phrog_17977 unknown function unknown function 1 13564 13899
YP_002265427.1 NC_011318_p19 hypothetical protein phrog_885 major tail protein tail 1 14313 14912
YP_002265410.1 NC_011318_p2 large terminase phrog_2 terminase large subunit head and packaging 1 398 1675
YP_002265440.1 NC_011318_p32 antirepressor phrog_14211 anti-repressor transcription regulation 1 26036 26740
YP_002265409.1 NC_011318_p1 small terminase phrog_606 terminase small subunit head and packaging 1 79 426
YP_002265451.1 NC_011318_p43 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 29165 29911
YP_002265441.1 NC_011318_p33 hypothetical protein phrog_19685 unknown function unknown function 1 26837 27010
YP_002265448.1 NC_011318_p40 hypothetical protein phrog_18566 unknown function unknown function 1 28443 28568
YP_002265414.1 NC_011318_p6 hypothetical protein singleton unknown function unknown function 1 4673 4909
YP_002265454.1 NC_011318_p46 hypothetical protein phrog_18368 unknown function unknown function 1 31447 31668
YP_002265436.1 NC_011318_p28 holin phrog_297 holin lysis 1 24795 25022
YP_002265428.1 NC_011318_p20 peptidase-colicin phrog_18646 unknown function unknown function 1 14925 15272
YP_002265420.1 NC_011318_p12 hypothetical protein singleton unknown function unknown function 1 8807 8995
YP_002265439.1 NC_011318_p31 hypothetical protein singleton unknown function unknown function 1 25653 25913