Genomic map of Enterobacteria phage YYZ-2008 (NC_011356)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_011356
Definition
Enterobacteria phage YYZ-2008, complete prophage genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
54896
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
75
%GC
51.11
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002274171.1 NC_011356_p35 antirepressor phrog_2379 anti-repressor transcription regulation 1 16689 17078
YP_002274184.1 NC_011356_p48 hypothetical protein phrog_949 unknown function unknown function -1 26885 27112
YP_002274211.1 NC_011356_p75 2-component sensor protein YehU phrog_10947 unknown function unknown function 1 53196 54896
YP_002274190.1 NC_011356_p54 portal protein phrog_2271 portal protein head and packaging 1 32243 34828
YP_002274183.1 NC_011356_p47 endopeptidase phrog_13 Rz-like spanin lysis 1 26055 26522
YP_002274167.1 NC_011356_p31 hypothetical protein phrog_1785 unknown function unknown function 1 14845 15060
YP_002274157.1 NC_011356_p21 N protein phrog_271 anti-termination protein N-like transcription regulation -1 8541 8885
YP_002274153.1 NC_011356_p17 Kil protein phrog_2461 Kil protein for bacterial septation inhibition other -1 7322 7543
YP_002274208.1 NC_011356_p72 hypothetical protein phrog_808 unknown function unknown function 1 51090 51563
YP_002274150.1 NC_011356_p14 exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 5483 6163
YP_002274207.1 NC_011356_p71 hypothetical protein phrog_576 tail fiber protein tail 1 50717 50986
YP_002274139.1 NC_011356_p3 hypothetical protein phrog_3871 unknown function unknown function -1 1889 2023
YP_002274146.1 NC_011356_p10 DksA-like zinc finger domain containing protein phrog_54 DksA-like zinc-finger protein other -1 4528 4749
YP_002274161.1 NC_011356_p25 hypothetical protein phrog_2602 unknown function unknown function -1 9542 10063
YP_002274149.1 NC_011356_p13 hypothetical protein phrog_18463 unknown function unknown function 1 5283 5609
YP_002274140.1 NC_011356_p4 hypothetical protein phrog_285 unknown function unknown function -1 2027 2269
YP_002274193.1 NC_011356_p57 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 35509 35955
YP_002274210.1 NC_011356_p74 DNA damage-inducible protein phrog_189 RecA filament binding protein DinI DNA, RNA and nucleotide metabolism -1 52448 52696
YP_002274180.1 NC_011356_p44 hypothetical protein phrog_406 unknown function unknown function 1 24131 24475
YP_002274164.1 NC_011356_p28 DNA replication protein phrog_345 replication initiation O-like DNA, RNA and nucleotide metabolism 1 12169 12990
YP_002274181.1 NC_011356_p45 endolysin phrog_7 endolysin lysis 1 24526 25059
YP_002274192.1 NC_011356_p56 head-tail adaptor phrog_25 head closure Hc1 connector 1 35162 35512
YP_002274170.1 NC_011356_p34 DNA N-6-adenine-methyltransferase phrog_111 DNA methyltransferase other 1 15707 16234
YP_002274196.1 NC_011356_p60 tail assembly protein phrog_344 tail assembly chaperone tail 1 37093 37467
YP_002274186.1 NC_011356_p50 phage terminase phrog_641 terminase small subunit head and packaging 1 27812 28372
YP_002274169.1 NC_011356_p33 recombination protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 15165 15710
YP_002274176.1 NC_011356_p40 Shiga toxin 1 subunit B phrog_851 Shiga toxin subunit B moron, auxiliary metabolic gene and host takeover 1 20853 21122
YP_002274172.1 NC_011356_p36 DNA-binding protein Roi phrog_63 anti-repressor Ant transcription regulation 1 17436 18164
YP_002274152.1 NC_011356_p16 Gam protein phrog_259 gam-like host nuclease inhibitor moron, auxiliary metabolic gene and host takeover -1 6951 7367
YP_002274147.1 NC_011356_p11 hypothetical protein phrog_303 unknown function unknown function -1 4848 5129
YP_002274159.1 NC_011356_p23 hypothetical protein phrog_22865 unknown function unknown function 1 9098 9364
YP_002274178.1 NC_011356_p42 hypothetical protein phrog_143 unknown function unknown function 1 21622 23472
YP_002274177.1 NC_011356_p41 hypothetical protein phrog_35554 unknown function unknown function 1 21273 21500
YP_002274162.1 NC_011356_p26 bacteriophage CI repressor phrog_4 transcriptional repressor transcription regulation -1 10565 11260
YP_002274142.1 NC_011356_p6 hypothetical protein phrog_5117 unknown function unknown function -1 2716 3072
YP_002274151.1 NC_011356_p15 Bet protein phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 6160 6945
YP_002274185.1 NC_011356_p49 DNAse phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism 1 27154 27519
YP_002274198.1 NC_011356_p62 tail protein phrog_339 tail length tape measure protein tail 1 37820 41062
YP_002274206.1 NC_011356_p70 tail protein phrog_366 tail fiber protein tail 1 49546 50715
YP_002274156.1 NC_011356_p20 hypothetical protein phrog_2471 unknown function unknown function -1 8222 8482
YP_002274168.1 NC_011356_p32 hypothetical protein phrog_599 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 15071 15307
YP_002274200.1 NC_011356_p64 tail protein phrog_18 minor tail protein tail 1 41396 42094
YP_002274166.1 NC_011356_p30 hypothetical protein phrog_343 unknown function unknown function 1 14434 14712
YP_002274201.1 NC_011356_p65 antirepressor protein Ant phrog_245 anti-repressor Ant transcription regulation 1 42783 43706
YP_002274199.1 NC_011356_p63 minor tail protein phrog_14 minor tail protein tail 1 41055 41396
YP_002274137.1 NC_011356_p1 integrase phrog_1 integrase integration and excision -1 296 1582
YP_002274155.1 NC_011356_p19 hypothetical protein phrog_31828 unknown function unknown function -1 8125 8280
YP_002274194.1 NC_011356_p58 prophage structural protein phrog_347 tail terminator connector 1 35952 36296
YP_002274141.1 NC_011356_p5 hypothetical protein phrog_924 unknown function unknown function -1 2357 2719
YP_002274160.1 NC_011356_p24 hypothetical protein phrog_14935 unknown function unknown function 1 9270 9431
YP_002274165.1 NC_011356_p29 Gp55-like protein phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 12987 14363
YP_002274173.1 NC_011356_p37 recombination endonuclease phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 18164 18769
YP_002274144.1 NC_011356_p8 hypothetical protein phrog_16308 unknown function unknown function -1 3406 3582
YP_002274197.1 NC_011356_p61 hypothetical protein phrog_337 tail protein tail 1 37491 37772
YP_002274195.1 NC_011356_p59 tail protein phrog_158 major tail protein tail 1 36293 37078
YP_002274154.1 NC_011356_p18 Ea10 protein phrog_646 unknown function unknown function -1 7671 8039
YP_002274179.1 NC_011356_p43 lysis protein phrog_20 holin lysis 1 23920 24126
YP_002274145.1 NC_011356_p9 hypothetical protein phrog_250 unknown function unknown function -1 3584 4531
YP_002274174.1 NC_011356_p38 antitermination protein Q phrog_79 anti-termination protein Q-like transcription regulation 1 18953 19387
YP_002274143.1 NC_011356_p7 hypothetical protein phrog_9263 unknown function unknown function -1 3069 3356
YP_002274175.1 NC_011356_p39 Shiga toxin 1 subunit A phrog_866 Shiga toxin subunit A moron, auxiliary metabolic gene and host takeover 1 19896 20843
YP_002274189.1 NC_011356_p53 hypothetical protein phrog_829 unknown function unknown function 1 32076 32297
YP_002274204.1 NC_011356_p68 phage-related tail protein phrog_31 central tail fiber J tail 1 45335 48814
YP_002274148.1 NC_011356_p12 hypothetical protein phrog_292 unknown function unknown function -1 5140 5331
YP_002274205.1 NC_011356_p69 outer membrane protein Lom precursor phrog_108 Lom outer membrane protein other 1 48882 49481
YP_002274202.1 NC_011356_p66 tail component K-like protein phrog_30 minor tail protein tail 1 43760 44497
YP_002274158.1 NC_011356_p22 hypothetical protein phrog_3137 unknown function unknown function -1 8791 8973
YP_002274209.1 NC_011356_p73 hypothetical protein phrog_808 unknown function unknown function 1 51645 52286
YP_002274203.1 NC_011356_p67 tail assembly protein phrog_32 tail assembly protein tail 1 44395 45075
YP_002274163.1 NC_011356_p27 transcriptional activator/repressor protein phrog_191 CII-like transcriptional activator transcription regulation 1 11692 11988
YP_002274188.1 NC_011356_p52 major head protein/prohead proteinase phrog_617 major head protein head and packaging 1 30094 32031
YP_002274187.1 NC_011356_p51 phage terminase-like protein large subunit phrog_9 terminase large subunit head and packaging 1 28369 30030
YP_002274138.1 NC_011356_p2 excisionase phrog_539 excisionase integration and excision -1 1616 1870
YP_002274182.1 NC_011356_p46 antirepressor phrog_524 anti-repressor Ant transcription regulation 1 25332 25901
YP_002274191.1 NC_011356_p55 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 34825 35151