Genomic map of Clostridium virus phiCD27 (NC_011398)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_011398
Definition
Clostridium phage phiCD27, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus.
DB of origin
REFSEQ
Length
50930
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
75
%GC
29.32
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002290883.1 NC_011398_p7 hypothetical protein phrog_3116 unknown function unknown function 1 6422 7459
YP_002290927.1 NC_011398_p51 hypothetical protein phrog_1564 unknown function unknown function 1 38079 38252
YP_002290946.1 NC_011398_p70 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 46878 47360
YP_002290880.1 NC_011398_p4 head morphogenesis protein phrog_1657 head morphogenesis head and packaging 1 3643 4650
YP_002290935.1 NC_011398_p59 hypothetical protein phrog_1310 unknown function unknown function 1 42103 42468
YP_002290938.1 NC_011398_p62 DNA methylase phrog_363 DNA methyltransferase other 1 43029 43859
YP_002290928.1 NC_011398_p52 hypothetical protein phrog_2219 unknown function unknown function 1 38352 38669
YP_002290905.1 NC_011398_p29 hypothetical protein phrog_4184 unknown function unknown function 1 25174 26406
YP_002290940.1 NC_011398_p64 hypothetical protein phrog_4572 unknown function unknown function 1 44270 44641
YP_002290881.1 NC_011398_p5 hypothetical protein phrog_3219 unknown function unknown function 1 4670 6004
YP_002290908.1 NC_011398_p32 hypothetical protein phrog_1193 hemolysin other 1 26872 27102
YP_002290899.1 NC_011398_p23 hypothetical protein phrog_1160 baseplate protein tail 1 21117 21887
YP_002290882.1 NC_011398_p6 hypothetical protein phrog_122 head decoration head and packaging 1 6020 6403
YP_002290932.1 NC_011398_p56 resolvase/integrase phrog_3253 unknown function unknown function 1 40902 41075
YP_002290890.1 NC_011398_p14 hypothetical protein phrog_365 tail protein tail 1 11099 11521
YP_002290914.1 NC_011398_p38 hypothetical protein phrog_87 metallo-protease other -1 30944 31465
YP_002290885.1 NC_011398_p9 hypothetical protein phrog_2405 unknown function unknown function 1 7834 8211
YP_002290894.1 NC_011398_p18 peptidoglycan-binding LysM phrog_380 endolysin lysis 1 17557 18228
YP_002290939.1 NC_011398_p63 hypothetical protein phrog_6014 unknown function unknown function 1 43904 44233
YP_002290933.1 NC_011398_p57 single stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 41091 41498
YP_002290929.1 NC_011398_p53 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 38755 39264
YP_002290916.1 NC_011398_p40 hypothetical protein phrog_2569 unknown function unknown function -1 32167 32355
YP_002290877.1 NC_011398_p1 terminase small subunit phrog_509 terminase small subunit head and packaging 1 54 755
YP_002290950.1 NC_011398_p74 hypothetical protein phrog_26154 unknown function unknown function 1 50065 50190
YP_002290909.1 NC_011398_p33 holin phrog_1129 holin lysis 1 27122 27379
YP_002290951.1 NC_011398_p75 hypothetical protein phrog_463 anti-repressor transcription regulation 1 50244 50921
YP_002290893.1 NC_011398_p17 hypothetical protein phrog_3793 unknown function unknown function 1 16621 17478
YP_002290945.1 NC_011398_p69 antirepressor phrog_463 anti-repressor transcription regulation 1 45877 46725
YP_002290941.1 NC_011398_p65 hypothetical protein phrog_5599 unknown function unknown function 1 44644 44826
YP_002290949.1 NC_011398_p73 hypothetical protein phrog_17098 unknown function unknown function 1 49680 49811
YP_002290936.1 NC_011398_p60 hypothetical protein phrog_2961 unknown function unknown function 1 42468 42602
YP_002290888.1 NC_011398_p12 hypothetical protein phrog_1939 unknown function unknown function 1 9458 9661
YP_002290884.1 NC_011398_p8 hypothetical protein phrog_3029 unknown function unknown function 1 7499 7837
YP_002290947.1 NC_011398_p71 hypothetical protein phrog_26280 unknown function unknown function 1 47674 48429
YP_002290891.1 NC_011398_p15 hypothetical protein phrog_389 tail protein XkdN-like tail 1 11598 12071
YP_002290904.1 NC_011398_p28 hypothetical protein phrog_1243 unknown function unknown function 1 24957 25139
YP_002290923.1 NC_011398_p47 hypothetical protein phrog_4738 transcriptional repressor transcription regulation -1 36496 36669
YP_002290889.1 NC_011398_p13 hypothetical protein phrog_279 tail sheath tail 1 9663 11084
YP_002290906.1 NC_011398_p30 hypothetical protein phrog_3834 unknown function unknown function 1 26403 26702
YP_002290918.1 NC_011398_p42 phage site-specific recombinase phrog_95 integrase integration and excision -1 33360 34718
YP_002290925.1 NC_011398_p49 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 37012 37800
YP_002290920.1 NC_011398_p44 phage repressor phrog_8 transcriptional regulator transcription regulation -1 35274 35729
YP_002290903.1 NC_011398_p27 hypothetical protein phrog_1626 rhodanese-related sulfurtransferase other 1 24661 24957
YP_002290937.1 NC_011398_p61 hypothetical protein phrog_8001 unknown function unknown function 1 42586 42921
YP_002290942.1 NC_011398_p66 hypothetical protein phrog_4279 unknown function unknown function 1 44901 45242
YP_002290886.1 NC_011398_p10 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 8177 8623
YP_002290897.1 NC_011398_p21 hypothetical protein phrog_120 baseplate wedge subunit tail 1 19520 19978
YP_002290892.1 NC_011398_p16 phage tail tape measure protein phrog_1272 tail length tape measure protein tail 1 12252 16541
YP_002290924.1 NC_011398_p48 hypothetical protein phrog_38821 unknown function unknown function 1 36825 36995
YP_002290912.1 NC_011398_p36 hypothetical protein phrog_5951 unknown function unknown function 1 28800 29318
YP_002290907.1 NC_011398_p31 hypothetical protein phrog_134 unknown function unknown function 1 26703 26840
YP_002290878.1 NC_011398_p2 terminase B phrog_2 terminase large subunit head and packaging 1 748 2157
YP_002290948.1 NC_011398_p72 phage DNA-binding protein phrog_2439 transcriptional regulator transcription regulation 1 48448 49611
YP_002290887.1 NC_011398_p11 hypothetical protein phrog_2146 unknown function unknown function 1 8624 9445
YP_002290895.1 NC_011398_p19 hypothetical protein phrog_400 tail protein tail 1 18225 19187
YP_002290944.1 NC_011398_p68 endodeoxyribonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 45368 45775
YP_002290926.1 NC_011398_p50 hypothetical protein phrog_17130 unknown function unknown function 1 37861 38049
YP_002290896.1 NC_011398_p20 hypothetical protein phrog_2403 unknown function unknown function 1 19180 19542
YP_002290898.1 NC_011398_p22 hypothetical protein phrog_6 baseplate wedge subunit tail 1 19987 21120
YP_002290921.1 NC_011398_p45 phage repressor phrog_3 transcriptional repressor transcription regulation 1 35883 36104
YP_002290913.1 NC_011398_p37 hypothetical protein phrog_6174 unknown function unknown function -1 29382 30968
YP_002290911.1 NC_011398_p35 hypothetical protein phrog_5384 unknown function unknown function 1 28272 28634
YP_002290934.1 NC_011398_p58 hypothetical protein phrog_7118 unknown function unknown function 1 41526 42089
YP_002290943.1 NC_011398_p67 hypothetical protein phrog_3794 unknown function unknown function 1 45258 45371
YP_002290902.1 NC_011398_p26 hypothetical protein phrog_1589 unknown function unknown function 1 22914 24647
YP_002290919.1 NC_011398_p43 hypothetical protein phrog_87 metallo-protease other -1 34783 35256
YP_002290901.1 NC_011398_p25 tail fiber protein phrog_1162 tail fiber protein tail 1 22280 22897
YP_002290900.1 NC_011398_p24 hypothetical protein phrog_1780 tail collar fiber protein tail 1 21888 22268
YP_002290879.1 NC_011398_p3 portal protein phrog_64 portal protein head and packaging 1 2148 3650
YP_002290922.1 NC_011398_p46 phage antirepressor phrog_7755 anti-repressor transcription regulation 1 36152 36364
YP_002290931.1 NC_011398_p55 phage replication protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 39891 40841
YP_002290910.1 NC_011398_p34 endolysin phrog_435 endolysin lysis 1 27379 28191
YP_002290915.1 NC_011398_p39 hypothetical protein phrog_17489 unknown function unknown function 1 31939 32091
YP_002290930.1 NC_011398_p54 essential recombination function protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 39274 39882
YP_002290917.1 NC_011398_p41 hypothetical protein phrog_738 unknown function unknown function 1 32612 32755