| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011398 |
Definition |
Clostridium phage phiCD27, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus. |
DB of origin |
REFSEQ |
Length |
50930 |
Host Name |
Clostridium difficile |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
75 |
%GC |
29.32 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002290883.1 | NC_011398_p7 | hypothetical protein | phrog_3116 | unknown function | unknown function | 1 | 6422 | 7459 |
| YP_002290927.1 | NC_011398_p51 | hypothetical protein | phrog_1564 | unknown function | unknown function | 1 | 38079 | 38252 |
| YP_002290946.1 | NC_011398_p70 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 46878 | 47360 |
| YP_002290880.1 | NC_011398_p4 | head morphogenesis protein | phrog_1657 | head morphogenesis | head and packaging | 1 | 3643 | 4650 |
| YP_002290935.1 | NC_011398_p59 | hypothetical protein | phrog_1310 | unknown function | unknown function | 1 | 42103 | 42468 |
| YP_002290938.1 | NC_011398_p62 | DNA methylase | phrog_363 | DNA methyltransferase | other | 1 | 43029 | 43859 |
| YP_002290928.1 | NC_011398_p52 | hypothetical protein | phrog_2219 | unknown function | unknown function | 1 | 38352 | 38669 |
| YP_002290905.1 | NC_011398_p29 | hypothetical protein | phrog_4184 | unknown function | unknown function | 1 | 25174 | 26406 |
| YP_002290940.1 | NC_011398_p64 | hypothetical protein | phrog_4572 | unknown function | unknown function | 1 | 44270 | 44641 |
| YP_002290881.1 | NC_011398_p5 | hypothetical protein | phrog_3219 | unknown function | unknown function | 1 | 4670 | 6004 |
| YP_002290908.1 | NC_011398_p32 | hypothetical protein | phrog_1193 | hemolysin | other | 1 | 26872 | 27102 |
| YP_002290899.1 | NC_011398_p23 | hypothetical protein | phrog_1160 | baseplate protein | tail | 1 | 21117 | 21887 |
| YP_002290882.1 | NC_011398_p6 | hypothetical protein | phrog_122 | head decoration | head and packaging | 1 | 6020 | 6403 |
| YP_002290932.1 | NC_011398_p56 | resolvase/integrase | phrog_3253 | unknown function | unknown function | 1 | 40902 | 41075 |
| YP_002290890.1 | NC_011398_p14 | hypothetical protein | phrog_365 | tail protein | tail | 1 | 11099 | 11521 |
| YP_002290914.1 | NC_011398_p38 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 30944 | 31465 |
| YP_002290885.1 | NC_011398_p9 | hypothetical protein | phrog_2405 | unknown function | unknown function | 1 | 7834 | 8211 |
| YP_002290894.1 | NC_011398_p18 | peptidoglycan-binding LysM | phrog_380 | endolysin | lysis | 1 | 17557 | 18228 |
| YP_002290939.1 | NC_011398_p63 | hypothetical protein | phrog_6014 | unknown function | unknown function | 1 | 43904 | 44233 |
| YP_002290933.1 | NC_011398_p57 | single stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41091 | 41498 |
| YP_002290929.1 | NC_011398_p53 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 38755 | 39264 |
| YP_002290916.1 | NC_011398_p40 | hypothetical protein | phrog_2569 | unknown function | unknown function | -1 | 32167 | 32355 |
| YP_002290877.1 | NC_011398_p1 | terminase small subunit | phrog_509 | terminase small subunit | head and packaging | 1 | 54 | 755 |
| YP_002290950.1 | NC_011398_p74 | hypothetical protein | phrog_26154 | unknown function | unknown function | 1 | 50065 | 50190 |
| YP_002290909.1 | NC_011398_p33 | holin | phrog_1129 | holin | lysis | 1 | 27122 | 27379 |
| YP_002290951.1 | NC_011398_p75 | hypothetical protein | phrog_463 | anti-repressor | transcription regulation | 1 | 50244 | 50921 |
| YP_002290893.1 | NC_011398_p17 | hypothetical protein | phrog_3793 | unknown function | unknown function | 1 | 16621 | 17478 |
| YP_002290945.1 | NC_011398_p69 | antirepressor | phrog_463 | anti-repressor | transcription regulation | 1 | 45877 | 46725 |
| YP_002290941.1 | NC_011398_p65 | hypothetical protein | phrog_5599 | unknown function | unknown function | 1 | 44644 | 44826 |
| YP_002290949.1 | NC_011398_p73 | hypothetical protein | phrog_17098 | unknown function | unknown function | 1 | 49680 | 49811 |
| YP_002290936.1 | NC_011398_p60 | hypothetical protein | phrog_2961 | unknown function | unknown function | 1 | 42468 | 42602 |
| YP_002290888.1 | NC_011398_p12 | hypothetical protein | phrog_1939 | unknown function | unknown function | 1 | 9458 | 9661 |
| YP_002290884.1 | NC_011398_p8 | hypothetical protein | phrog_3029 | unknown function | unknown function | 1 | 7499 | 7837 |
| YP_002290947.1 | NC_011398_p71 | hypothetical protein | phrog_26280 | unknown function | unknown function | 1 | 47674 | 48429 |
| YP_002290891.1 | NC_011398_p15 | hypothetical protein | phrog_389 | tail protein XkdN-like | tail | 1 | 11598 | 12071 |
| YP_002290904.1 | NC_011398_p28 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 24957 | 25139 |
| YP_002290923.1 | NC_011398_p47 | hypothetical protein | phrog_4738 | transcriptional repressor | transcription regulation | -1 | 36496 | 36669 |
| YP_002290889.1 | NC_011398_p13 | hypothetical protein | phrog_279 | tail sheath | tail | 1 | 9663 | 11084 |
| YP_002290906.1 | NC_011398_p30 | hypothetical protein | phrog_3834 | unknown function | unknown function | 1 | 26403 | 26702 |
| YP_002290918.1 | NC_011398_p42 | phage site-specific recombinase | phrog_95 | integrase | integration and excision | -1 | 33360 | 34718 |
| YP_002290925.1 | NC_011398_p49 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 37012 | 37800 |
| YP_002290920.1 | NC_011398_p44 | phage repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 35274 | 35729 |
| YP_002290903.1 | NC_011398_p27 | hypothetical protein | phrog_1626 | rhodanese-related sulfurtransferase | other | 1 | 24661 | 24957 |
| YP_002290937.1 | NC_011398_p61 | hypothetical protein | phrog_8001 | unknown function | unknown function | 1 | 42586 | 42921 |
| YP_002290942.1 | NC_011398_p66 | hypothetical protein | phrog_4279 | unknown function | unknown function | 1 | 44901 | 45242 |
| YP_002290886.1 | NC_011398_p10 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 8177 | 8623 |
| YP_002290897.1 | NC_011398_p21 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 19520 | 19978 |
| YP_002290892.1 | NC_011398_p16 | phage tail tape measure protein | phrog_1272 | tail length tape measure protein | tail | 1 | 12252 | 16541 |
| YP_002290924.1 | NC_011398_p48 | hypothetical protein | phrog_38821 | unknown function | unknown function | 1 | 36825 | 36995 |
| YP_002290912.1 | NC_011398_p36 | hypothetical protein | phrog_5951 | unknown function | unknown function | 1 | 28800 | 29318 |
| YP_002290907.1 | NC_011398_p31 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 26703 | 26840 |
| YP_002290878.1 | NC_011398_p2 | terminase B | phrog_2 | terminase large subunit | head and packaging | 1 | 748 | 2157 |
| YP_002290948.1 | NC_011398_p72 | phage DNA-binding protein | phrog_2439 | transcriptional regulator | transcription regulation | 1 | 48448 | 49611 |
| YP_002290887.1 | NC_011398_p11 | hypothetical protein | phrog_2146 | unknown function | unknown function | 1 | 8624 | 9445 |
| YP_002290895.1 | NC_011398_p19 | hypothetical protein | phrog_400 | tail protein | tail | 1 | 18225 | 19187 |
| YP_002290944.1 | NC_011398_p68 | endodeoxyribonuclease | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 45368 | 45775 |
| YP_002290926.1 | NC_011398_p50 | hypothetical protein | phrog_17130 | unknown function | unknown function | 1 | 37861 | 38049 |
| YP_002290896.1 | NC_011398_p20 | hypothetical protein | phrog_2403 | unknown function | unknown function | 1 | 19180 | 19542 |
| YP_002290898.1 | NC_011398_p22 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | 1 | 19987 | 21120 |
| YP_002290921.1 | NC_011398_p45 | phage repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 35883 | 36104 |
| YP_002290913.1 | NC_011398_p37 | hypothetical protein | phrog_6174 | unknown function | unknown function | -1 | 29382 | 30968 |
| YP_002290911.1 | NC_011398_p35 | hypothetical protein | phrog_5384 | unknown function | unknown function | 1 | 28272 | 28634 |
| YP_002290934.1 | NC_011398_p58 | hypothetical protein | phrog_7118 | unknown function | unknown function | 1 | 41526 | 42089 |
| YP_002290943.1 | NC_011398_p67 | hypothetical protein | phrog_3794 | unknown function | unknown function | 1 | 45258 | 45371 |
| YP_002290902.1 | NC_011398_p26 | hypothetical protein | phrog_1589 | unknown function | unknown function | 1 | 22914 | 24647 |
| YP_002290919.1 | NC_011398_p43 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 34783 | 35256 |
| YP_002290901.1 | NC_011398_p25 | tail fiber protein | phrog_1162 | tail fiber protein | tail | 1 | 22280 | 22897 |
| YP_002290900.1 | NC_011398_p24 | hypothetical protein | phrog_1780 | tail collar fiber protein | tail | 1 | 21888 | 22268 |
| YP_002290879.1 | NC_011398_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 2148 | 3650 |
| YP_002290922.1 | NC_011398_p46 | phage antirepressor | phrog_7755 | anti-repressor | transcription regulation | 1 | 36152 | 36364 |
| YP_002290931.1 | NC_011398_p55 | phage replication protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 39891 | 40841 |
| YP_002290910.1 | NC_011398_p34 | endolysin | phrog_435 | endolysin | lysis | 1 | 27379 | 28191 |
| YP_002290915.1 | NC_011398_p39 | hypothetical protein | phrog_17489 | unknown function | unknown function | 1 | 31939 | 32091 |
| YP_002290930.1 | NC_011398_p54 | essential recombination function protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39274 | 39882 |
| YP_002290917.1 | NC_011398_p41 | hypothetical protein | phrog_738 | unknown function | unknown function | 1 | 32612 | 32755 |