| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011589 |
Definition |
Stenotrophomonas phage S1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
40287 |
Host Name |
Stenotrophomonas maltophilia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
63.69 |
Number of singletons |
16 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002321465.1 | NC_011589_p15 | hypothetical protein | phrog_24340 | unknown function | unknown function | 1 | 11542 | 11961 |
| YP_002321472.1 | NC_011589_p22 | tail protein c | phrog_6079 | tail protein | tail | 1 | 22237 | 24411 |
| YP_002321464.1 | NC_011589_p14 | lysin | phrog_9610 | unknown function | unknown function | 1 | 11163 | 11486 |
| YP_002321495.1 | NC_011589_p45 | hypothetical protein | phrog_12107 | transcriptional repressor | transcription regulation | -1 | 38310 | 38969 |
| YP_002321452.1 | NC_011589_p2 | hypothetical protein | phrog_13749 | unknown function | unknown function | 1 | 2454 | 2804 |
| YP_002321460.1 | NC_011589_p10 | virion protein | phrog_873 | endolysin | head and packaging | 1 | 9912 | 10343 |
| YP_002321471.1 | NC_011589_p21 | hypothetical protein | phrog_9600 | tail assembly protein | tail | 1 | 21258 | 22292 |
| YP_002321497.1 | NC_011589_p47 | hypothetical protein | phrog_101 | CII-like transcriptional activator | transcription regulation | 1 | 39389 | 39919 |
| YP_002321493.1 | NC_011589_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37433 | 37984 |
| YP_002321470.1 | NC_011589_p20 | tail protein b | phrog_6128 | unknown function | unknown function | 1 | 17656 | 21261 |
| YP_002321491.1 | NC_011589_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36510 | 36854 |
| YP_002321467.1 | NC_011589_p17 | hypothetical protein | phrog_27 | tail completion or Neck1 protein | connector | 1 | 12829 | 13497 |
| YP_002321480.1 | NC_011589_p30 | repressor protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 30001 | 30390 |
| YP_002321451.1 | NC_011589_p1 | primase | phrog_2249 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 40 | 2454 |
| YP_002321486.1 | NC_011589_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33804 | 34517 |
| YP_002321482.1 | NC_011589_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31646 | 32467 |
| YP_002321454.1 | NC_011589_p4 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | 1 | 3441 | 5363 |
| YP_002321457.1 | NC_011589_p7 | portal protein | phrog_21 | portal protein | head and packaging | 1 | 5974 | 7464 |
| YP_002321459.1 | NC_011589_p9 | recombinase | phrog_122 | head decoration | head and packaging | 1 | 9466 | 9831 |
| YP_002321490.1 | NC_011589_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35911 | 36504 |
| YP_002321487.1 | NC_011589_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34514 | 34906 |
| YP_002321498.1 | NC_011589_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39921 | 40151 |
| YP_002321453.1 | NC_011589_p3 | terminase small subunit | phrog_57 | terminase small subunit | head and packaging | 1 | 2797 | 3441 |
| YP_002321469.1 | NC_011589_p19 | hypothetical protein | phrog_4408 | unknown function | unknown function | 1 | 17236 | 17652 |
| YP_002321485.1 | NC_011589_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33565 | 33804 |
| YP_002321488.1 | NC_011589_p38 | hypothetical protein | phrog_18837 | unknown function | unknown function | -1 | 34914 | 35402 |
| YP_002321455.1 | NC_011589_p5 | peptidase a | singleton | unknown function | unknown function | 1 | 5357 | 5677 |
| YP_002321478.1 | NC_011589_p28 | hypothetical protein | phrog_26768 | unknown function | unknown function | 1 | 28014 | 28526 |
| YP_002321474.1 | NC_011589_p24 | methylase | phrog_56 | DNA methyltransferase | other | 1 | 24782 | 25573 |
| YP_002321473.1 | NC_011589_p23 | hypothetical protein | phrog_5076 | unknown function | unknown function | 1 | 24401 | 24634 |
| YP_002321462.1 | NC_011589_p12 | Rz like protein | phrog_2466 | Rz-like spanin | lysis | 1 | 10675 | 11166 |
| YP_002321477.1 | NC_011589_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27395 | 27820 |
| YP_002321479.1 | NC_011589_p29 | integrase | phrog_1 | integrase | integration and excision | -1 | 28530 | 29795 |
| YP_002321476.1 | NC_011589_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26420 | 27391 |
| YP_002321489.1 | NC_011589_p39 | hypothetical protein | phrog_14685 | unknown function | unknown function | -1 | 35399 | 35869 |
| YP_002321481.1 | NC_011589_p31 | PAPS | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | -1 | 30623 | 31618 |
| YP_002321463.1 | NC_011589_p13 | Rz.1 like protein | singleton | unknown function | unknown function | 1 | 10799 | 11119 |
| YP_002321461.1 | NC_011589_p11 | hypothetical protein | phrog_38423 | unknown function | unknown function | 1 | 10340 | 10678 |
| YP_002321492.1 | NC_011589_p42 | MSF protein | singleton | unknown function | unknown function | 1 | 36851 | 37312 |
| YP_002321466.1 | NC_011589_p16 | tail protein a | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 11975 | 12775 |
| YP_002321475.1 | NC_011589_p25 | hypothetical protein | phrog_1599 | unknown function | unknown function | -1 | 25577 | 26242 |
| YP_002321496.1 | NC_011589_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39183 | 39392 |
| YP_002321494.1 | NC_011589_p44 | hypothetical protein | phrog_27415 | unknown function | unknown function | -1 | 38024 | 38395 |
| YP_002321483.1 | NC_011589_p33 | methylase | singleton | unknown function | unknown function | -1 | 32469 | 33302 |
| YP_002321484.1 | NC_011589_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33299 | 33568 |
| YP_002321456.1 | NC_011589_p6 | peptidase b | phrog_2545 | head-tail adaptor Ad1 | connector | 1 | 5757 | 5972 |
| YP_002321468.1 | NC_011589_p18 | tape measure protein | phrog_26084 | tail length tape measure protein | tail | 1 | 13490 | 17236 |
| YP_002321458.1 | NC_011589_p8 | major head protein | phrog_4523 | major head and protease protein | head and packaging | 1 | 7461 | 9443 |