Genomic map of Stenotrophomonas phage S1 (NC_011589)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_011589
Definition
Stenotrophomonas phage S1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
40287
Host Name
Stenotrophomonas maltophilia
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
63.69
Number of singletons
16
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002321465.1 NC_011589_p15 hypothetical protein phrog_24340 unknown function unknown function 1 11542 11961
YP_002321472.1 NC_011589_p22 tail protein c phrog_6079 tail protein tail 1 22237 24411
YP_002321464.1 NC_011589_p14 lysin phrog_9610 unknown function unknown function 1 11163 11486
YP_002321495.1 NC_011589_p45 hypothetical protein phrog_12107 transcriptional repressor transcription regulation -1 38310 38969
YP_002321452.1 NC_011589_p2 hypothetical protein phrog_13749 unknown function unknown function 1 2454 2804
YP_002321460.1 NC_011589_p10 virion protein phrog_873 endolysin head and packaging 1 9912 10343
YP_002321471.1 NC_011589_p21 hypothetical protein phrog_9600 tail assembly protein tail 1 21258 22292
YP_002321497.1 NC_011589_p47 hypothetical protein phrog_101 CII-like transcriptional activator transcription regulation 1 39389 39919
YP_002321493.1 NC_011589_p43 hypothetical protein singleton unknown function unknown function 1 37433 37984
YP_002321470.1 NC_011589_p20 tail protein b phrog_6128 unknown function unknown function 1 17656 21261
YP_002321491.1 NC_011589_p41 hypothetical protein singleton unknown function unknown function 1 36510 36854
YP_002321467.1 NC_011589_p17 hypothetical protein phrog_27 tail completion or Neck1 protein connector 1 12829 13497
YP_002321480.1 NC_011589_p30 repressor protein phrog_66 excisionase and transcriptional regulator integration and excision -1 30001 30390
YP_002321451.1 NC_011589_p1 primase phrog_2249 DNA primase DNA, RNA and nucleotide metabolism 1 40 2454
YP_002321486.1 NC_011589_p36 hypothetical protein singleton unknown function unknown function -1 33804 34517
YP_002321482.1 NC_011589_p32 hypothetical protein singleton unknown function unknown function 1 31646 32467
YP_002321454.1 NC_011589_p4 terminase large subunit phrog_15 terminase large subunit head and packaging 1 3441 5363
YP_002321457.1 NC_011589_p7 portal protein phrog_21 portal protein head and packaging 1 5974 7464
YP_002321459.1 NC_011589_p9 recombinase phrog_122 head decoration head and packaging 1 9466 9831
YP_002321490.1 NC_011589_p40 hypothetical protein singleton unknown function unknown function 1 35911 36504
YP_002321487.1 NC_011589_p37 hypothetical protein singleton unknown function unknown function -1 34514 34906
YP_002321498.1 NC_011589_p48 hypothetical protein singleton unknown function unknown function 1 39921 40151
YP_002321453.1 NC_011589_p3 terminase small subunit phrog_57 terminase small subunit head and packaging 1 2797 3441
YP_002321469.1 NC_011589_p19 hypothetical protein phrog_4408 unknown function unknown function 1 17236 17652
YP_002321485.1 NC_011589_p35 hypothetical protein singleton unknown function unknown function -1 33565 33804
YP_002321488.1 NC_011589_p38 hypothetical protein phrog_18837 unknown function unknown function -1 34914 35402
YP_002321455.1 NC_011589_p5 peptidase a singleton unknown function unknown function 1 5357 5677
YP_002321478.1 NC_011589_p28 hypothetical protein phrog_26768 unknown function unknown function 1 28014 28526
YP_002321474.1 NC_011589_p24 methylase phrog_56 DNA methyltransferase other 1 24782 25573
YP_002321473.1 NC_011589_p23 hypothetical protein phrog_5076 unknown function unknown function 1 24401 24634
YP_002321462.1 NC_011589_p12 Rz like protein phrog_2466 Rz-like spanin lysis 1 10675 11166
YP_002321477.1 NC_011589_p27 hypothetical protein singleton unknown function unknown function -1 27395 27820
YP_002321479.1 NC_011589_p29 integrase phrog_1 integrase integration and excision -1 28530 29795
YP_002321476.1 NC_011589_p26 hypothetical protein singleton unknown function unknown function -1 26420 27391
YP_002321489.1 NC_011589_p39 hypothetical protein phrog_14685 unknown function unknown function -1 35399 35869
YP_002321481.1 NC_011589_p31 PAPS phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover -1 30623 31618
YP_002321463.1 NC_011589_p13 Rz.1 like protein singleton unknown function unknown function 1 10799 11119
YP_002321461.1 NC_011589_p11 hypothetical protein phrog_38423 unknown function unknown function 1 10340 10678
YP_002321492.1 NC_011589_p42 MSF protein singleton unknown function unknown function 1 36851 37312
YP_002321466.1 NC_011589_p16 tail protein a phrog_807 major tail protein with Ig-like domain tail 1 11975 12775
YP_002321475.1 NC_011589_p25 hypothetical protein phrog_1599 unknown function unknown function -1 25577 26242
YP_002321496.1 NC_011589_p46 hypothetical protein singleton unknown function unknown function 1 39183 39392
YP_002321494.1 NC_011589_p44 hypothetical protein phrog_27415 unknown function unknown function -1 38024 38395
YP_002321483.1 NC_011589_p33 methylase singleton unknown function unknown function -1 32469 33302
YP_002321484.1 NC_011589_p34 hypothetical protein singleton unknown function unknown function -1 33299 33568
YP_002321456.1 NC_011589_p6 peptidase b phrog_2545 head-tail adaptor Ad1 connector 1 5757 5972
YP_002321468.1 NC_011589_p18 tape measure protein phrog_26084 tail length tape measure protein tail 1 13490 17236
YP_002321458.1 NC_011589_p8 major head protein phrog_4523 major head and protease protein head and packaging 1 7461 9443