| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_011611 |
Definition |
Pseudomonas phage MP38, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus. |
DB of origin |
REFSEQ |
Length |
36885 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
64.51 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002332313.1 | NC_011611_p1 | c repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 170 | 829 |
| YP_002332323.1 | NC_011611_p11 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 6871 | 7284 |
| YP_002332326.1 | NC_011611_p14 | hypothetical protein | phrog_4367 | unknown function | unknown function | 1 | 8377 | 8685 |
| YP_002332324.1 | NC_011611_p12 | hypothetical protein | phrog_2043 | unknown function | unknown function | 1 | 7274 | 7558 |
| YP_002332333.1 | NC_011611_p21 | hypothetical protein | phrog_1024 | unknown function | unknown function | 1 | 11051 | 11497 |
| YP_002332331.1 | NC_011611_p19 | integral membrane protein | phrog_836 | late transcriptional activator | transcription regulation | 1 | 10206 | 10655 |
| YP_002332315.1 | NC_011611_p3 | hypothetical protein | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 1429 | 1863 |
| YP_002332349.1 | NC_011611_p37 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 22213 | 22686 |
| YP_002332342.1 | NC_011611_p30 | virion morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 17158 | 18444 |
| YP_002332340.1 | NC_011611_p28 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 13916 | 15568 |
| YP_002332351.1 | NC_011611_p39 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 22886 | 23656 |
| YP_002332325.1 | NC_011611_p13 | host nuclease inhibitor protein | phrog_18351 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 7575 | 8375 |
| YP_002332316.1 | NC_011611_p4 | hypothetical protein | phrog_8647 | unknown function | unknown function | 1 | 1863 | 2189 |
| YP_002332320.1 | NC_011611_p8 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 5422 | 6087 |
| YP_002332335.1 | NC_011611_p23 | hypothetical protein | phrog_4057 | unknown function | unknown function | 1 | 11936 | 12178 |
| YP_002332314.1 | NC_011611_p2 | Ner-like protein | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1070 | 1426 |
| YP_002332361.1 | NC_011611_p49 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 32860 | 35067 |
| YP_002332337.1 | NC_011611_p25 | hypothetical protein | phrog_1103 | unknown function | unknown function | 1 | 12687 | 12875 |
| YP_002332328.1 | NC_011611_p16 | hypothetical protein | phrog_3652 | unknown function | unknown function | 1 | 9179 | 9448 |
| YP_002332345.1 | NC_011611_p33 | hypothetical protein | phrog_371 | major head protein | head and packaging | 1 | 20215 | 21129 |
| YP_002332348.1 | NC_011611_p36 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 21800 | 22216 |
| YP_002332338.1 | NC_011611_p26 | hypothetical protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12884 | 13384 |
| YP_002332317.1 | NC_011611_p5 | hypothetical protein | phrog_4468 | unknown function | unknown function | 1 | 2186 | 2596 |
| YP_002332322.1 | NC_011611_p10 | hypothetical protein | phrog_3765 | unknown function | unknown function | 1 | 6755 | 6871 |
| YP_002332319.1 | NC_011611_p7 | DNA transposition protein | phrog_296 | DNA transposition protein | integration and excision | 1 | 4655 | 5425 |
| YP_002332344.1 | NC_011611_p32 | protease (I) and scaffold (Z) protein | phrog_328 | head maturation protease | head and packaging | 1 | 19240 | 20211 |
| YP_002332352.1 | NC_011611_p40 | hypothetical protein gpGT | phrog_1442 | tail assembly chaperone | tail | 1 | 23661 | 24304 |
| YP_002332332.1 | NC_011611_p20 | hypothetical protein | phrog_3648 | unknown function | unknown function | 1 | 10759 | 11106 |
| YP_002332363.1 | NC_011611_p51 | hypothetical protein | phrog_2432 | unknown function | unknown function | 1 | 36209 | 36496 |
| YP_002332330.1 | NC_011611_p18 | hypothetical protein | phrog_286 | unknown function | unknown function | 1 | 9812 | 10219 |
| YP_002332336.1 | NC_011611_p24 | hypothetical protein | phrog_2975 | Rz-like spanin | lysis | 1 | 12175 | 12576 |
| YP_002332353.1 | NC_011611_p41 | hypothetical protein gpG | phrog_1442 | tail assembly chaperone | tail | 1 | 23661 | 24179 |
| YP_002332362.1 | NC_011611_p50 | hypothetical protein | phrog_2875 | virion structural protein | head and packaging | 1 | 35064 | 36212 |
| YP_002332358.1 | NC_011611_p46 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 31631 | 32407 |
| YP_002332329.1 | NC_011611_p17 | hypothetical protein | phrog_14676 | unknown function | unknown function | 1 | 9633 | 9815 |
| YP_002332360.1 | NC_011611_p48 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 32652 | 32870 |
| YP_002332346.1 | NC_011611_p34 | hypothetical protein | phrog_4833 | unknown function | unknown function | 1 | 21196 | 21636 |
| YP_002332356.1 | NC_011611_p44 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 28970 | 29893 |
| YP_002332354.1 | NC_011611_p42 | tail component protein | phrog_2335 | tail length tape measure protein | tail | 1 | 24306 | 28004 |
| YP_002332339.1 | NC_011611_p27 | hypothetical protein | phrog_1244 | unknown function | unknown function | -1 | 13390 | 13917 |
| YP_002332350.1 | NC_011611_p38 | hypothetical protein | phrog_3129 | unknown function | unknown function | 1 | 22674 | 22853 |
| YP_002332347.1 | NC_011611_p35 | hypothetical protein | phrog_3376 | unknown function | unknown function | 1 | 21636 | 21803 |
| YP_002332357.1 | NC_011611_p45 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 29893 | 31596 |
| YP_002332318.1 | NC_011611_p6 | transposase A | phrog_310 | transposase | integration and excision | 1 | 2589 | 4658 |
| YP_002332341.1 | NC_011611_p29 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 15578 | 17158 |
| YP_002332327.1 | NC_011611_p15 | hypothetical protein | phrog_12417 | unknown function | unknown function | 1 | 8688 | 9176 |
| YP_002332321.1 | NC_011611_p9 | hypothetical protein | phrog_3190 | unknown function | unknown function | 1 | 6159 | 6734 |
| YP_002332343.1 | NC_011611_p31 | virion morphogenesis protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 18444 | 18911 |
| YP_002332359.1 | NC_011611_p47 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 32416 | 32655 |
| YP_002332334.1 | NC_011611_p22 | virion protein | phrog_873 | endolysin | head and packaging | 1 | 11520 | 11936 |
| YP_002332355.1 | NC_011611_p43 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 28012 | 28968 |