Genomic map of Staphylococcus virus IPLA88 (NC_011614)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_011614
Definition
Staphylococcus phage phiSauS-IPLA88, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus.
DB of origin
REFSEQ
Length
42526
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
60
%GC
34.91
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002332477.1 NC_011614_p1 integrase phrog_1 integrase integration and excision -1 1 1065
YP_002332523.1 NC_011614_p47 hypothetical protein phrog_183 tail chaperone protein tail 1 23765 24130
YP_002332496.1 NC_011614_p20 hypothetical protein phrog_433 unknown function unknown function 1 10741 10962
YP_002332532.1 NC_011614_p56 hypothetical protein phrog_276 unknown function unknown function 1 35207 35506
YP_002332531.1 NC_011614_p55 hypothetical protein phrog_134 unknown function unknown function 1 34984 35166
YP_002332516.1 NC_011614_p40 scaffold protein phrog_172 head scaffolding protein head and packaging 1 19811 20425
YP_002332534.1 NC_011614_p58 tail fiber protein phrog_18372 tail fiber protein tail 1 37660 39573
YP_002332480.1 NC_011614_p4 cro phrog_3 transcriptional repressor transcription regulation 1 3025 3279
YP_002332489.1 NC_011614_p13 hypothetical protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6447 7067
YP_002332520.1 NC_011614_p44 head-tail joining phrog_5 tail completion or Neck1 protein connector 1 22362 22709
YP_002332526.1 NC_011614_p50 hypothetical protein phrog_33 distal tail protein Dit tail 1 28001 28948
YP_002332536.1 NC_011614_p60 endolysin phrog_635 endolysin lysis 1 40027 41487
YP_002332493.1 NC_011614_p17 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 8932 9288
YP_002332515.1 NC_011614_p39 hypothetical protein phrog_1431 unknown function unknown function 1 19506 19676
YP_002332525.1 NC_011614_p49 tape measure protein phrog_58 tail length tape measure protein tail 1 24521 27988
YP_002332490.1 NC_011614_p14 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 7070 7495
YP_002332519.1 NC_011614_p43 DNA packaging protein phrog_132 head-tail adaptor connector 1 21731 22063
YP_002332529.1 NC_011614_p53 tail protein phrog_257 minor tail protein tail 1 32783 34606
YP_002332497.1 NC_011614_p21 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 10973 11377
YP_002332518.1 NC_011614_p42 hypothetical protein phrog_390 Arc-like repressor transcription regulation 1 21435 21722
YP_002332488.1 NC_011614_p12 hypothetical protein phrog_946 unknown function unknown function 1 6233 6454
YP_002332499.1 NC_011614_p23 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 11568 11930
YP_002332503.1 NC_011614_p27 hypothetical protein phrog_266 unknown function unknown function 1 12737 12991
YP_002332511.1 NC_011614_p35 terminase large subunit phrog_2 terminase large subunit head and packaging 1 15596 16885
YP_002332479.1 NC_011614_p3 hypothetical protein phrog_5375 unknown function unknown function -1 1643 2143
YP_002332528.1 NC_011614_p52 hypothetical protein phrog_287 minor tail protein tail 1 30873 32783
YP_002332512.1 NC_011614_p36 portal protein phrog_64 portal protein head and packaging 1 16896 18437
YP_002332500.1 NC_011614_p24 hypothetical protein phrog_236 nucleotide kinase other 1 11930 12184
YP_002332521.1 NC_011614_p45 hypothetical protein phrog_176 tail terminator connector 1 22721 23104
YP_002332524.1 NC_011614_p48 hypothetical protein phrog_441 tail assembly chaperone tail 1 24160 24504
YP_002332486.1 NC_011614_p10 hypothetical protein phrog_983 unknown function unknown function 1 5656 5958
YP_002332530.1 NC_011614_p54 hypothetical protein phrog_300 tail fiber protein tail 1 34606 34983
YP_002332513.1 NC_011614_p37 hypothetical protein phrog_37440 unknown function unknown function 1 18319 18504
YP_002332491.1 NC_011614_p15 hypothetical protein phrog_398 unknown function unknown function 1 7509 8180
YP_002332483.1 NC_011614_p7 hypothetical protein phrog_823 unknown function unknown function 1 4872 5087
YP_002332501.1 NC_011614_p25 hypothetical protein phrog_258 virulence associated other 1 12184 12432
YP_002332498.1 NC_011614_p22 hypothetical protein phrog_299 unknown function unknown function 1 11382 11567
YP_002332514.1 NC_011614_p38 head protein phrog_115 minor head protein head and packaging 1 18549 19433
YP_002332485.1 NC_011614_p9 hypothetical protein phrog_11451 CI-like repressor transcription regulation 1 5277 5591
YP_002332508.1 NC_011614_p32 hypothetical protein phrog_152 RinB-like transcriptional activator transcription regulation 1 14157 14330
YP_002332527.1 NC_011614_p51 minor structural protein phrog_663 minor head protein head and packaging 1 28957 30858
YP_002332495.1 NC_011614_p19 hypothetical protein phrog_3161 unknown function unknown function 1 10523 10738
YP_002332482.1 NC_011614_p6 anti-repressor phrog_63 anti-repressor Ant transcription regulation 1 4107 4856
YP_002332481.1 NC_011614_p5 hypothetical protein phrog_7948 unknown function unknown function -1 3460 4050
YP_002332509.1 NC_011614_p33 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 14492 14911
YP_002332522.1 NC_011614_p46 major tail protein phrog_238 major tail protein tail 1 23122 23703
YP_002332492.1 NC_011614_p16 hypothetical protein phrog_6493 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 8177 8932
YP_002332502.1 NC_011614_p26 hypothetical protein phrog_1034 unknown function unknown function 1 12441 12677
YP_002332510.1 NC_011614_p34 terminase small subunit phrog_51 terminase small subunit head and packaging 1 15099 15593
YP_002332504.1 NC_011614_p28 hypothetical protein phrog_1235 unknown function unknown function 1 12978 13139
YP_002332507.1 NC_011614_p31 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 13954 14160
YP_002332484.1 NC_011614_p8 hypothetical protein phrog_369 unknown function unknown function 1 5102 5272
YP_002332478.1 NC_011614_p2 hypothetical protein phrog_4037 unknown function unknown function -1 1124 1639
YP_002332505.1 NC_011614_p29 hypothetical protein phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 13139 13675
YP_002332535.1 NC_011614_p59 holin phrog_962 holin lysis 1 39624 40061
YP_002332506.1 NC_011614_p30 hypothetical protein phrog_2027 unknown function unknown function 1 13712 13957
YP_002332517.1 NC_011614_p41 major head protein phrog_10 major head protein head and packaging 1 20439 21413
YP_002332487.1 NC_011614_p11 hypothetical protein phrog_401 unknown function unknown function 1 5963 6223
YP_002332533.1 NC_011614_p57 peptidoglycan hydrolase phrog_759 tail associated cell-wall hydrolase other 1 35643 37547
YP_002332494.1 NC_011614_p18 helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 9285 10526