| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_012027 |
Definition |
Mycobacterium phage Phlyer, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Pipefishvirus; unclassified Pipefishvirus. |
DB of origin |
REFSEQ |
Length |
69378 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
103 |
%GC |
67.48 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002564146.1 | NC_012027_p48 | phi:0000326 - phage function unknown | phrog_870 | unknown function | unknown function | -1 | 43409 | 43954 |
| YP_002564132.1 | NC_012027_p34 | phi:0000326 - phage function unknown | phrog_240 | head protein | head and packaging | 1 | 34190 | 34573 |
| YP_002564118.1 | NC_012027_p20 | phi:0000326 - phage function unknown | phrog_2525 | unknown function | unknown function | 1 | 16672 | 17004 |
| YP_002564116.1 | NC_012027_p18 | phi:0000326 - phage function unknown | phrog_2272 | unknown function | unknown function | 1 | 15753 | 16199 |
| YP_002564188.1 | NC_012027_p90 | phi:0000326 - phage function unknown | phrog_5355 | unknown function | unknown function | -1 | 64011 | 64166 |
| YP_002564200.1 | NC_012027_p102 | phi:0000326 - phage function unknown | phrog_6432 | unknown function | unknown function | 1 | 68807 | 68962 |
| YP_002564139.1 | NC_012027_p41 | phi:0000326 - phage function unknown | phrog_892 | tail fiber protein | tail | 1 | 38342 | 38752 |
| YP_002564142.1 | NC_012027_p44 | phi:0000326 - phage function unknown | phrog_955 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39766 | 40251 |
| YP_002564176.1 | NC_012027_p78 | phi:0000326 - phage function unknown | phrog_4974 | unknown function | unknown function | -1 | 61137 | 61325 |
| YP_002564194.1 | NC_012027_p96 | phi:0000326 - phage function unknown | phrog_1010 | unknown function | unknown function | -1 | 65998 | 66486 |
| YP_002564120.1 | NC_012027_p22 | phi:0000326 - phage function unknown | phrog_6514 | unknown function | unknown function | -1 | 18233 | 18343 |
| YP_002564174.1 | NC_012027_p76 | phi:0000326 - phage function unknown | phrog_6229 | unknown function | unknown function | 1 | 60268 | 60615 |
| YP_002564152.1 | NC_012027_p54 | phi:0000326 - phage function unknown | phrog_3892 | unknown function | unknown function | -1 | 48353 | 48667 |
| YP_002564105.1 | NC_012027_p7 | phi:0000326 - phage function unknown | phrog_6317 | unknown function | unknown function | -1 | 5377 | 5628 |
| YP_002564107.1 | NC_012027_p9 | phi:0000326 - phage function unknown | phrog_6276 | unknown function | unknown function | -1 | 6305 | 6601 |
| YP_002564121.1 | NC_012027_p23 | phi:0000326 - phage function unknown | phrog_783 | head-tail adaptor | connector | 1 | 18474 | 19214 |
| YP_002564192.1 | NC_012027_p94 | phi:0000326 - phage function unknown | phrog_6114 | unknown function | unknown function | -1 | 65257 | 65436 |
| YP_002564162.1 | NC_012027_p64 | phi:0000326 - phage function unknown | phrog_6656 | unknown function | unknown function | -1 | 55879 | 56109 |
| YP_002564125.1 | NC_012027_p27 | phi:0000326 - phage function unknown | phrog_1118 | tail assembly chaperone | tail | 1 | 20511 | 21104 |
| YP_002564201.1 | NC_012027_p103 | phi:0000326 - phage function unknown | phrog_5930 | unknown function | unknown function | 1 | 69027 | 69329 |
| YP_002564169.1 | NC_012027_p71 | phi:0000326 - phage function unknown | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 58634 | 59233 |
| YP_002564101.1 | NC_012027_p3 | phi:0000326 - phage function unknown | phrog_6307 | unknown function | unknown function | 1 | 851 | 1072 |
| YP_002564138.1 | NC_012027_p40 | phi:0000326 - phage function unknown | phrog_941 | unknown function | unknown function | 1 | 38001 | 38324 |
| YP_002564117.1 | NC_012027_p19 | phi:0000326 - phage function unknown | phrog_2344 | unknown function | unknown function | 1 | 16196 | 16675 |
| YP_002564161.1 | NC_012027_p63 | phi:0000326 - phage function unknown | phrog_6735 | unknown function | unknown function | -1 | 55723 | 55842 |
| YP_002564135.1 | NC_012027_p37 | phi:0000326 - phage function unknown | phrog_282 | unknown function | unknown function | 1 | 35668 | 36267 |
| YP_002564136.1 | NC_012027_p38 | phi:0000326 - phage function unknown | phrog_3329 | unknown function | unknown function | 1 | 36264 | 37613 |
| YP_002564130.1 | NC_012027_p32 | phi:0000326 - phage function unknown | phrog_356 | minor tail protein | tail | 1 | 31578 | 32960 |
| YP_002564179.1 | NC_012027_p81 | phi:0000326 - phage function unknown | phrog_4461 | unknown function | unknown function | -1 | 61980 | 62078 |
| YP_002564145.1 | NC_012027_p47 | LysB | phrog_102 | endolysin | lysis | 1 | 42275 | 43339 |
| YP_002564099.1 | NC_012027_p1 | phi:0000326 - phage function unknown | phrog_723 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 693 |
| YP_002564168.1 | NC_012027_p70 | phi:0000326 - phage function unknown | phrog_4938 | unknown function | unknown function | 1 | 58473 | 58637 |
| YP_002564141.1 | NC_012027_p43 | phi:0000326 - phage function unknown | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39533 | 39769 |
| YP_002564198.1 | NC_012027_p100 | phi:0000326 - phage function unknown | phrog_5733 | unknown function | unknown function | 1 | 68338 | 68583 |
| YP_002564182.1 | NC_012027_p84 | phi:0000326 - phage function unknown | phrog_6338 | unknown function | unknown function | -1 | 62403 | 62561 |
| YP_002564178.1 | NC_012027_p80 | phi:0000126 - DNA endonuclease activity | phrog_960 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 61658 | 61987 |
| YP_002564197.1 | NC_012027_p99 | phi:0000326 - phage function unknown | phrog_4825 | unknown function | unknown function | 1 | 68154 | 68327 |
| YP_002564166.1 | NC_012027_p68 | phi:0000326 - phage function unknown | phrog_1016 | unknown function | unknown function | 1 | 57962 | 58249 |
| YP_002564143.1 | NC_012027_p45 | phi:0000326 - phage function unknown | phrog_636 | unknown function | unknown function | -1 | 40248 | 40946 |
| YP_002564191.1 | NC_012027_p93 | phi:0000326 - phage function unknown | phrog_5411 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 64877 | 65257 |
| YP_002564196.1 | NC_012027_p98 | phi:0000326 - phage function unknown | phrog_2972 | unknown function | unknown function | -1 | 67746 | 67976 |
| YP_002564150.1 | NC_012027_p52 | phi:0000114 - DNA helicase activity | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 46200 | 47897 |
| YP_002564112.1 | NC_012027_p14 | phi:0000064 - phage head/capsid protein | phrog_777 | major head protein | head and packaging | 1 | 11748 | 13775 |
| YP_002564111.1 | NC_012027_p13 | phi:0000326 - phage function unknown | phrog_2069 | unknown function | unknown function | 1 | 11397 | 11603 |
| YP_002564114.1 | NC_012027_p16 | phi:0000326 - phage function unknown | phrog_970 | unknown function | unknown function | 1 | 14698 | 15303 |
| YP_002564103.1 | NC_012027_p5 | IBrB, ParB-like nuclease domain | phrog_2159 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 2148 | 2717 |
| YP_002564193.1 | NC_012027_p95 | phi:0000326 - phage function unknown | phrog_6469 | unknown function | unknown function | -1 | 65433 | 65855 |
| YP_002564133.1 | NC_012027_p35 | phi:0000326 - phage function unknown | phrog_948 | unknown function | unknown function | 1 | 34582 | 35007 |
| YP_002564172.1 | NC_012027_p74 | phi:0000326 - phage function unknown | phrog_1306 | unknown function | unknown function | -1 | 59916 | 60050 |
| YP_002564167.1 | NC_012027_p69 | phi:0000326 - phage function unknown | phrog_6404 | unknown function | unknown function | 1 | 58246 | 58476 |
| YP_002564115.1 | NC_012027_p17 | phi:0000326 - phage function unknown | phrog_565 | holin | lysis | 1 | 15300 | 15734 |
| YP_002564160.1 | NC_012027_p62 | phi:0000326 - phage function unknown | phrog_993 | unknown function | unknown function | -1 | 55235 | 55723 |
| YP_002564165.1 | NC_012027_p67 | phi:0000326 - phage function unknown | phrog_996 | unknown function | unknown function | 1 | 57198 | 57965 |
| YP_002564128.1 | NC_012027_p30 | phi:0000326 - phage function unknown | phrog_837 | minor tail protein | tail | 1 | 28308 | 29351 |
| YP_002564149.1 | NC_012027_p51 | phi:0000326 - phage function unknown | phrog_780 | unknown function | unknown function | -1 | 45885 | 46154 |
| YP_002564106.1 | NC_012027_p8 | RuvC | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 5625 | 6242 |
| YP_002564171.1 | NC_012027_p73 | phi:0000326 - phage function unknown | phrog_4885 | unknown function | unknown function | 1 | 59646 | 59903 |
| YP_002564155.1 | NC_012027_p57 | phi:0000326 - phage function unknown | phrog_6342 | unknown function | unknown function | -1 | 51832 | 52572 |
| YP_002564181.1 | NC_012027_p83 | phi:0000326 - phage function unknown | phrog_6460 | unknown function | unknown function | -1 | 62236 | 62406 |
| YP_002564153.1 | NC_012027_p55 | phi:0000326 - phage function unknown | phrog_1371 | unknown function | unknown function | -1 | 48679 | 49152 |
| YP_002564122.1 | NC_012027_p24 | phi:0000326 - phage function unknown | phrog_810 | unknown function | unknown function | 1 | 19211 | 19732 |
| YP_002564100.1 | NC_012027_p2 | phi:0000326 - phage function unknown | phrog_6919 | unknown function | unknown function | 1 | 690 | 854 |
| YP_002564187.1 | NC_012027_p89 | phi:0000326 - phage function unknown | phrog_2089 | unknown function | unknown function | -1 | 63802 | 63966 |
| YP_002564157.1 | NC_012027_p59 | phi:0000326 - phage function unknown | phrog_6482 | unknown function | unknown function | -1 | 54386 | 54661 |
| YP_002564189.1 | NC_012027_p91 | phi:0000326 - phage function unknown | phrog_6199 | unknown function | unknown function | -1 | 64241 | 64588 |
| YP_002564126.1 | NC_012027_p28 | phi:0000086 - phage tail tape measure protein | phrog_934 | tail length tape measure protein | tail | 1 | 21130 | 26871 |
| YP_002564108.1 | NC_012027_p10 | phi:0000326 - phage function unknown | phrog_781 | unknown function | unknown function | 1 | 6706 | 7041 |
| YP_002564186.1 | NC_012027_p88 | phi:0000326 - phage function unknown | phrog_7490 | unknown function | unknown function | -1 | 63520 | 63708 |
| YP_002564183.1 | NC_012027_p85 | phi:0000326 - phage function unknown | phrog_4392 | unknown function | unknown function | -1 | 62554 | 62907 |
| YP_002564164.1 | NC_012027_p66 | phi:0000326 - phage function unknown | phrog_982 | unknown function | unknown function | -1 | 56533 | 56802 |
| YP_002564110.1 | NC_012027_p12 | phi:0000068 - phage portal protein | phrog_859 | portal protein | head and packaging | 1 | 8965 | 11397 |
| YP_002564154.1 | NC_012027_p56 | phi:0000114 - DNA helicase activity | phrog_906 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 49195 | 51798 |
| YP_002564199.1 | NC_012027_p101 | phi:0000326 - phage function unknown | phrog_6097 | unknown function | unknown function | 1 | 68580 | 68816 |
| YP_002564124.1 | NC_012027_p26 | phi:0000326 - phage function unknown | phrog_5 | tail completion or Neck1 protein | connector | 1 | 20098 | 20511 |
| YP_002564129.1 | NC_012027_p31 | phi:0000326 - phage function unknown | phrog_746 | minor tail protein | tail | 1 | 29348 | 31576 |
| YP_002564177.1 | NC_012027_p79 | phi:0000326 - phage function unknown | phrog_6691 | unknown function | unknown function | -1 | 61380 | 61661 |
| YP_002564185.1 | NC_012027_p87 | phi:0000326 - phage function unknown | phrog_7414 | unknown function | unknown function | -1 | 63236 | 63523 |
| YP_002564140.1 | NC_012027_p42 | phi:0000326 - phage function unknown | phrog_2804 | virion structural protein | head and packaging | 1 | 38752 | 39477 |
| YP_002564175.1 | NC_012027_p77 | phi:0000326 - phage function unknown | phrog_928 | unknown function | unknown function | 1 | 60597 | 61124 |
| YP_002564147.1 | NC_012027_p49 | phi:0000326 - phage function unknown | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44004 | 45617 |
| YP_002564109.1 | NC_012027_p11 | phi:0000326 - phage function unknown | phrog_776 | portal protein | head and packaging | 1 | 7071 | 8975 |
| YP_002564190.1 | NC_012027_p92 | phi:0000326 - phage function unknown | phrog_6428 | unknown function | unknown function | -1 | 64665 | 64877 |
| YP_002564123.1 | NC_012027_p25 | phi:0000326 - phage function unknown | phrog_901 | unknown function | unknown function | 1 | 19743 | 20114 |
| YP_002564195.1 | NC_012027_p97 | phi:0000326 - phage function unknown | phrog_1221 | unknown function | unknown function | -1 | 66560 | 67618 |
| YP_002564159.1 | NC_012027_p61 | phi:0000326 - phage function unknown | phrog_3025 | unknown function | unknown function | -1 | 54792 | 55238 |
| YP_002564148.1 | NC_012027_p50 | phi:0000326 - phage function unknown | phrog_7519 | unknown function | unknown function | -1 | 45617 | 45838 |
| YP_002564119.1 | NC_012027_p21 | phi:0000082 - phage major tail protein | phrog_792 | major tail protein | tail | 1 | 17092 | 18171 |
| YP_002564137.1 | NC_012027_p39 | phi:0000326 - phage function unknown | phrog_915 | unknown function | unknown function | 1 | 37636 | 38004 |
| YP_002564134.1 | NC_012027_p36 | phi:0000326 - phage function unknown | phrog_282 | unknown function | unknown function | 1 | 35018 | 35671 |
| YP_002564173.1 | NC_012027_p75 | phi:0000326 - phage function unknown | phrog_6511 | unknown function | unknown function | 1 | 60105 | 60257 |
| YP_002564104.1 | NC_012027_p6 | phi:0000073 - phage terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 2714 | 5236 |
| YP_002564131.1 | NC_012027_p33 | phi:0000326 - phage function unknown | phrog_416 | minor tail protein | tail | 1 | 32957 | 34159 |
| YP_002564102.1 | NC_012027_p4 | IBrA, PAPS reductase domain | phrog_2302 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 1069 | 2151 |
| YP_002564113.1 | NC_012027_p15 | phi:0000326 - phage function unknown | phrog_779 | unknown function | unknown function | 1 | 13874 | 14683 |
| YP_002564170.1 | NC_012027_p72 | phi:0000326 - phage function unknown | phrog_1031 | unknown function | unknown function | 1 | 59238 | 59642 |
| YP_002564127.1 | NC_012027_p29 | phi:0000326 - phage function unknown | phrog_838 | unknown function | unknown function | 1 | 26881 | 28311 |
| YP_002564144.1 | NC_012027_p46 | LysA | phrog_700 | endolysin | lysis | 1 | 41009 | 42274 |
| YP_002564158.1 | NC_012027_p60 | phi:0000326 - phage function unknown | phrog_6936 | unknown function | unknown function | -1 | 54658 | 54795 |
| YP_002564180.1 | NC_012027_p82 | phi:0000326 - phage function unknown | phrog_6304 | unknown function | unknown function | -1 | 62075 | 62239 |
| YP_002564163.1 | NC_012027_p65 | phi:0000326 - phage function unknown | phrog_6105 | unknown function | unknown function | -1 | 56106 | 56456 |
| YP_002564156.1 | NC_012027_p58 | phi:0000115 - DNA directed DNA polymerase activity | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 52569 | 54386 |
| YP_002564184.1 | NC_012027_p86 | phi:0000326 - phage function unknown | phrog_7541 | unknown function | unknown function | -1 | 62907 | 63239 |
| YP_002564151.1 | NC_012027_p53 | phi:0000326 - phage function unknown | phrog_6400 | unknown function | unknown function | -1 | 47991 | 48353 |