| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_012223 |
Definition |
Enterobacteria phage SSL2009a, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dhillonvirus. |
DB of origin |
REFSEQ |
Length |
44899 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
67 |
%GC |
54.66 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008550174.1 | NC_012223_p61 | holin-like class II protein | phrog_2359 | holin | lysis | 1 | 41862 | 42152 |
| YP_008550164.1 | NC_012223_p45 | hypothetical protein | phrog_10102 | unknown function | unknown function | -1 | 32797 | 32967 |
| YP_008550169.1 | NC_012223_p56 | hypothetical protein | phrog_12533 | unknown function | unknown function | 1 | 40377 | 40646 |
| YP_008550146.1 | NC_012223_p1 | terminase large subunit | phrog_3064 | terminase | head and packaging | 1 | 56 | 628 |
| YP_008550156.1 | NC_012223_p32 | hypothetical protein | phrog_415 | polynucleotide kinase | other | -1 | 25195 | 25665 |
| YP_008550170.1 | NC_012223_p57 | hypothetical protein | phrog_15977 | unknown function | unknown function | 1 | 40643 | 40786 |
| YP_002720085.1 | NC_012223_p3 | structural protein | phrog_145 | portal protein | head and packaging | 1 | 2025 | 3545 |
| YP_002720086.1 | NC_012223_p4 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 3529 | 4632 |
| YP_008550160.1 | NC_012223_p36 | hypothetical protein | phrog_18961 | unknown function | unknown function | -1 | 26798 | 27040 |
| YP_008550149.1 | NC_012223_p12 | hypothetical protein | phrog_11158 | unknown function | unknown function | 1 | 8813 | 8929 |
| YP_008550161.1 | NC_012223_p37 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 27109 | 27444 |
| YP_002720070.1 | NC_012223_p14 | tail protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 9271 | 9864 |
| YP_002720087.1 | NC_012223_p5 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | 1 | 4625 | 4954 |
| YP_008550176.1 | NC_012223_p63 | lysozyme | phrog_7 | endolysin | lysis | 1 | 42381 | 42872 |
| YP_002720076.1 | NC_012223_p8 | hypothetical protein | phrog_24635 | unknown function | unknown function | -1 | 5884 | 6213 |
| YP_002720050.1 | NC_012223_p48 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 34131 | 35561 |
| YP_002720057.1 | NC_012223_p27 | superinfection exclusion protein | phrog_1119 | Cor superinfection exclusion protein | moron, auxiliary metabolic gene and host takeover | -1 | 22063 | 22281 |
| YP_008550159.1 | NC_012223_p35 | hypothetical protein | phrog_10530 | DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 26339 | 26797 |
| YP_002720040.1 | NC_012223_p38 | hypothetical protein | phrog_757 | DNA methyltransferase | other | -1 | 27441 | 28136 |
| YP_002720072.1 | NC_012223_p11 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 8281 | 8811 |
| YP_002720055.2 | NC_012223_p17 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 11144 | 11506 |
| YP_008550147.1 | NC_012223_p6 | hypothetical protein | phrog_1267 | Rz-like spanin | lysis | 1 | 4836 | 5066 |
| YP_002720059.1 | NC_012223_p25 | hypothetical protein | phrog_557 | outer membrane protein | other | 1 | 21070 | 21372 |
| YP_002720062.1 | NC_012223_p22 | minor tail protein | phrog_30 | minor tail protein | tail | 1 | 16268 | 17008 |
| YP_002720051.1 | NC_012223_p49 | hypothetical protein | phrog_9934 | unknown function | unknown function | -1 | 35561 | 35749 |
| YP_002720066.1 | NC_012223_p18 | hypothetical protein | phrog_14875 | unknown function | unknown function | 1 | 11725 | 11820 |
| YP_002720065.1 | NC_012223_p19 | tail tape measure protein | phrog_24 | tail length tape measure protein | tail | 1 | 12205 | 14844 |
| YP_002720063.1 | NC_012223_p21 | minor tail protein L | phrog_18 | minor tail protein | tail | 1 | 15477 | 16265 |
| YP_002720060.1 | NC_012223_p24 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 17613 | 21032 |
| YP_002720043.1 | NC_012223_p41 | hypothetical protein | phrog_5558 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 29824 | 29997 |
| YP_002720054.1 | NC_012223_p52 | hypothetical protein | phrog_9366 | transposase | integration and excision | 1 | 36993 | 37322 |
| YP_008550163.1 | NC_012223_p40 | hypothetical protein | phrog_9291 | unknown function | unknown function | -1 | 29562 | 29780 |
| YP_002720068.1 | NC_012223_p16 | major tail protein | phrog_584 | major tail protein | tail | 1 | 10348 | 11073 |
| YP_008550155.1 | NC_012223_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24859 | 25401 |
| YP_002720089.1 | NC_012223_p7 | hypothetical protein | phrog_1965 | unknown function | unknown function | -1 | 5080 | 5844 |
| YP_002720053.1 | NC_012223_p51 | hypothetical protein | phrog_3127 | unknown function | unknown function | -1 | 36050 | 36592 |
| YP_008550167.1 | NC_012223_p54 | hypothetical protein | phrog_23498 | unknown function | unknown function | 1 | 39967 | 40080 |
| YP_002720045.1 | NC_012223_p43 | hypothetical protein | phrog_1222 | unknown function | unknown function | -1 | 30313 | 30504 |
| YP_008550158.1 | NC_012223_p34 | DNA methyltransferase | phrog_111 | DNA methyltransferase | other | -1 | 25867 | 26352 |
| YP_008550171.1 | NC_012223_p58 | hypothetical protein | phrog_10243 | unknown function | unknown function | 1 | 40783 | 41400 |
| YP_002720075.1 | NC_012223_p9 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6353 | 7054 |
| YP_002720067.2 | NC_012223_p28 | tail tip protein | phrog_1980 | tail fiber protein | tail | 1 | 22362 | 23978 |
| YP_008550165.1 | NC_012223_p46 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 33026 | 33805 |
| YP_008550173.1 | NC_012223_p60 | hypothetical protein | phrog_2531 | unknown function | unknown function | 1 | 41483 | 41809 |
| YP_008550152.1 | NC_012223_p26 | hypothetical protein | phrog_425 | membrane associated protein | moron, auxiliary metabolic gene and host takeover | 1 | 21375 | 22046 |
| YP_008550162.1 | NC_012223_p39 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 28133 | 29557 |
| YP_008550177.1 | NC_012223_p64 | hypothetical protein | phrog_215 | structural protein with Ig domain | head and packaging | 1 | 42889 | 43290 |
| YP_008550179.1 | NC_012223_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43465 | 43638 |
| YP_008550178.1 | NC_012223_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43386 | 43475 |
| YP_002720061.1 | NC_012223_p23 | tail assembly protein I | phrog_32 | tail assembly protein | tail | 1 | 16999 | 17616 |
| YP_008550175.1 | NC_012223_p62 | holin-like class I protein | phrog_2508 | holin | lysis | 1 | 42149 | 42394 |
| YP_008550154.1 | NC_012223_p30 | hypothetical protein | phrog_9871 | unknown function | unknown function | -1 | 24622 | 25131 |
| YP_008550157.1 | NC_012223_p33 | hypothetical protein | phrog_10685 | unknown function | unknown function | -1 | 25662 | 25886 |
| YP_002720049.1 | NC_012223_p47 | hypothetical protein | phrog_11211 | unknown function | unknown function | -1 | 33896 | 34138 |
| YP_002720052.1 | NC_012223_p50 | hypothetical protein | phrog_4965 | unknown function | unknown function | -1 | 35750 | 36001 |
| YP_008550166.1 | NC_012223_p53 | replicative helicase/primease | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | 1 | 37333 | 39597 |
| YP_009177646.1 | NC_012223_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 628 | 2013 |
| YP_002720046.1 | NC_012223_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 30509 | 32800 |
| YP_008550180.1 | NC_012223_p67 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43703 | 44845 |
| YP_008550151.1 | NC_012223_p20 | minor tail protein | phrog_9922 | minor tail protein | tail | 1 | 14881 | 15480 |
| YP_002720069.1 | NC_012223_p15 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 9864 | 10286 |
| YP_008550148.1 | NC_012223_p10 | structural protein | phrog_247 | major head protein | head and packaging | 1 | 7152 | 8252 |
| YP_008550168.1 | NC_012223_p55 | hypothetical protein | phrog_9839 | unknown function | unknown function | 1 | 40077 | 40367 |
| YP_002720044.1 | NC_012223_p42 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 30038 | 30316 |
| YP_008550172.1 | NC_012223_p59 | hypothetical protein | phrog_13628 | unknown function | unknown function | 1 | 41397 | 41537 |
| YP_008550150.1 | NC_012223_p13 | structural protein | phrog_161 | head closure Hc1 | connector | 1 | 8916 | 9269 |
| YP_008550153.1 | NC_012223_p29 | hypothetical protein | phrog_10558 | unknown function | unknown function | -1 | 24005 | 24580 |