| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_012418 |
Definition |
Pseudomonas phage phikF77, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Phikmvvirus; Pseudomonas virus kF77. |
DB of origin |
REFSEQ |
Length |
43152 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
62.86 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002727847.1 | NC_012418_p28 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 17845 | 18207 |
| YP_002727854.1 | NC_012418_p35 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 23678 | 24649 |
| YP_002727867.1 | NC_012418_p48 | holin | phrog_6597 | holin | lysis | 1 | 40943 | 41143 |
| YP_002727841.1 | NC_012418_p22 | DNA polymerase A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11583 | 14009 |
| YP_002727821.1 | NC_012418_p2 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 1950 | 2489 |
| YP_002727853.1 | NC_012418_p34 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 22142 | 23674 |
| YP_002727868.1 | NC_012418_p49 | endolysin | phrog_7 | endolysin | lysis | 1 | 41140 | 41622 |
| YP_002727831.1 | NC_012418_p12 | hypothetical protein | phrog_6915 | unknown function | unknown function | 1 | 5204 | 5563 |
| YP_002727849.1 | NC_012418_p30 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18559 | 21009 |
| YP_002727833.1 | NC_012418_p14 | hypothetical protein | phrog_9409 | unknown function | unknown function | 1 | 6455 | 6874 |
| YP_002727852.1 | NC_012418_p33 | structural protein | phrog_3112 | virion structural protein | head and packaging | 1 | 21834 | 22130 |
| YP_002727846.1 | NC_012418_p27 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 16789 | 17835 |
| YP_002727850.1 | NC_012418_p31 | hypothetical protein | phrog_6575 | unknown function | unknown function | 1 | 21165 | 21419 |
| YP_002727855.1 | NC_012418_p36 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 24702 | 25712 |
| YP_002727822.1 | NC_012418_p3 | hypothetical protein | phrog_18183 | unknown function | unknown function | 1 | 2556 | 2657 |
| YP_002727848.1 | NC_012418_p29 | hypothetical protein | phrog_18213 | unknown function | unknown function | 1 | 18200 | 18550 |
| YP_002727836.1 | NC_012418_p17 | DnaB helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8244 | 9434 |
| YP_002727835.1 | NC_012418_p16 | DnaG-like primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 7373 | 8197 |
| YP_002727829.1 | NC_012418_p10 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 4346 | 4639 |
| YP_002727842.1 | NC_012418_p23 | hypothetical protein | phrog_5437 | unknown function | unknown function | 1 | 14006 | 14317 |
| YP_002727830.1 | NC_012418_p11 | hypothetical protein | phrog_5433 | unknown function | unknown function | 1 | 4718 | 5134 |
| YP_002727861.1 | NC_012418_p42 | structural protein | phrog_6953 | tail fiber protein | tail | 1 | 36106 | 36861 |
| YP_002727843.1 | NC_012418_p24 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 14372 | 15421 |
| YP_002727844.1 | NC_012418_p25 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15421 | 16362 |
| YP_002727866.1 | NC_012418_p47 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 39141 | 40946 |
| YP_002727838.1 | NC_012418_p19 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 10041 | 10988 |
| YP_002727869.1 | NC_012418_p50 | phage lambda Rz1-like protein | phrog_214 | Rz-like spanin | lysis | 1 | 41580 | 41909 |
| YP_002727862.1 | NC_012418_p43 | tail fiber protein | phrog_8874 | tail fiber protein | tail | 1 | 36861 | 37319 |
| YP_002727834.1 | NC_012418_p15 | hypothetical protein | phrog_2563 | unknown function | unknown function | 1 | 6645 | 7187 |
| YP_002727871.1 | NC_012418_p52 | structural protein | phrog_6908 | minor head protein | head and packaging | 1 | 41999 | 42313 |
| YP_002727859.1 | NC_012418_p40 | internal virion protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 29391 | 32087 |
| YP_002727860.1 | NC_012418_p41 | virion protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 32091 | 36104 |
| YP_002727845.1 | NC_012418_p26 | DNA endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 16352 | 16792 |
| YP_002727837.1 | NC_012418_p18 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 9424 | 10041 |
| YP_002727865.1 | NC_012418_p46 | hypothetical protein | phrog_891 | terminase small subunit | head and packaging | 1 | 38826 | 39131 |
| YP_002727820.1 | NC_012418_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1654 | 1947 |
| YP_002727840.1 | NC_012418_p21 | hypothetical protein | phrog_7292 | unknown function | unknown function | 1 | 11293 | 11586 |
| YP_002727828.1 | NC_012418_p9 | hypothetical protein | phrog_4955 | unknown function | unknown function | 1 | 4088 | 4336 |
| YP_002727858.1 | NC_012418_p39 | internal virion protein A | phrog_805 | internal virion protein | head and packaging | 1 | 28846 | 29391 |
| YP_002727851.1 | NC_012418_p32 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 21416 | 21889 |
| YP_002727863.1 | NC_012418_p44 | tail fiber protein | phrog_4176 | tail fiber protein | tail | 1 | 37312 | 38217 |
| YP_002727823.1 | NC_012418_p4 | hypothetical protein | phrog_12691 | unknown function | unknown function | 1 | 2657 | 2779 |
| YP_002727872.1 | NC_012418_p53 | structural protein | phrog_7171 | minor head protein | head and packaging | 1 | 42363 | 42557 |
| YP_002727870.1 | NC_012418_p51 | Rz1 protein | phrog_456 | Rz-like spanin | lysis | 1 | 41797 | 41997 |
| YP_002727826.1 | NC_012418_p7 | hypothetical protein | phrog_8496 | unknown function | unknown function | 1 | 3619 | 3798 |
| YP_002727864.1 | NC_012418_p45 | tail fiber protein | phrog_4950 | tail fiber protein | tail | 1 | 38221 | 38826 |
| YP_002727824.1 | NC_012418_p5 | hypothetical protein | phrog_6951 | unknown function | unknown function | 1 | 2858 | 3226 |
| YP_002727827.1 | NC_012418_p8 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 3798 | 4091 |
| YP_002727857.1 | NC_012418_p38 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 26366 | 28846 |
| YP_002727856.1 | NC_012418_p37 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 25809 | 26363 |
| YP_002727825.1 | NC_012418_p6 | hypothetical protein | phrog_7027 | unknown function | unknown function | 1 | 3213 | 3440 |
| YP_002727832.1 | NC_012418_p13 | hypothetical protein | phrog_6982 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5566 | 6375 |
| YP_002727839.1 | NC_012418_p20 | hypothetical protein | phrog_19207 | unknown function | unknown function | 1 | 10985 | 11269 |