Genomic map of Vibrio phage VP93 (NC_012662)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_012662
Definition
Vibrio phage VP93, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Maculvirus; Vibrio virus VP93.
DB of origin
REFSEQ
Length
43931
Host Name
Vibrio parahaemolyticus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
44
%GC
49.1
Number of singletons
18
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002875628.1 NC_012662_p4 hypothetical protein singleton unknown function unknown function 1 1600 1749
YP_002875661.1 NC_012662_p37 DNA maturase A phrog_891 terminase small subunit head and packaging 1 38112 38411
YP_002875649.1 NC_012662_p25 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 17413 19863
YP_002875641.1 NC_012662_p17 hypothetical protein phrog_862 unknown function unknown function 1 12481 13296
YP_002875630.1 NC_012662_p6 hypothetical protein singleton unknown function unknown function 1 2452 4593
YP_002875650.1 NC_012662_p26 hypothetical protein singleton unknown function unknown function 1 20301 20546
YP_002875634.1 NC_012662_p10 primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 5916 6728
YP_002875637.1 NC_012662_p13 hypothetical protein phrog_6254 HNH endonuclease DNA, RNA and nucleotide metabolism 1 8349 8654
YP_002875626.1 NC_012662_p2 hypothetical protein phrog_5277 unknown function unknown function 1 741 1277
YP_002875665.1 NC_012662_p41 hypothetical protein phrog_894 endolysin lysis 1 41347 41760
YP_002875651.1 NC_012662_p27 head-tail connector protein phrog_449 head-tail adaptor connector 1 20555 22087
YP_002875662.1 NC_012662_p38 DNA maturase B phrog_38 terminase large subunit head and packaging 1 38536 40341
YP_002875642.1 NC_012662_p18 hypothetical protein singleton unknown function unknown function 1 13343 13675
YP_002875667.1 NC_012662_p43 hypothetical protein singleton unknown function unknown function 1 42239 42571
YP_002875664.1 NC_012662_p40 hypothetical protein singleton unknown function unknown function 1 40754 41338
YP_002875627.1 NC_012662_p3 hypothetical protein singleton unknown function unknown function 1 1279 1590
YP_002875646.1 NC_012662_p22 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 14957 15907
YP_002875648.1 NC_012662_p24 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 16643 17227
YP_002875666.1 NC_012662_p42 hypothetical protein phrog_322 unknown function unknown function 1 41753 42121
YP_002875659.1 NC_012662_p35 tail fiber protein singleton unknown function unknown function 1 34750 35361
YP_002875660.1 NC_012662_p36 glycosyl hydrolase singleton unknown function unknown function 1 35370 38102
YP_002875655.1 NC_012662_p31 tail tubular protein B phrog_457 tail protein tail 1 24741 27083
YP_002875647.1 NC_012662_p23 endonuclease phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 16087 16527
YP_002875656.1 NC_012662_p32 hypothetical protein phrog_4295 internal virion protein head and packaging 1 27093 27839
YP_002875629.1 NC_012662_p5 hypothetical protein singleton unknown function unknown function 1 1830 2411
YP_002875653.1 NC_012662_p29 capsid protein phrog_267 major head protein head and packaging 1 22967 23965
YP_002875625.1 NC_012662_p1 hypothetical protein singleton unknown function unknown function 1 425 688
YP_002875658.1 NC_012662_p34 internal core protein phrog_342 internal virion protein with endolysin domain head and packaging 1 30577 34431
YP_002875663.1 NC_012662_p39 hypothetical protein singleton unknown function unknown function 1 40446 40745
YP_002875632.1 NC_012662_p8 hypothetical protein singleton unknown function unknown function 1 5518 5697
YP_002875644.1 NC_012662_p20 hypothetical protein singleton unknown function unknown function 1 14316 14519
YP_002875638.1 NC_012662_p14 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 8651 11086
YP_002875635.1 NC_012662_p11 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 6710 7990
YP_002875639.1 NC_012662_p15 hypothetical protein phrog_1965 unknown function unknown function 1 11102 11677
YP_002875652.1 NC_012662_p28 scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 22087 22902
YP_002875633.1 NC_012662_p9 hypothetical protein singleton unknown function unknown function 1 5752 5916
YP_002875643.1 NC_012662_p19 hypothetical protein phrog_1992 MazG-like pyrophosphatase other 1 13687 14316
YP_002875631.1 NC_012662_p7 peptidase phrog_4191 peptidase other 1 4619 5521
YP_002875657.1 NC_012662_p33 hypothetical protein phrog_2083 internal virion lysozyme motif head and packaging 1 27849 30527
YP_002875645.1 NC_012662_p21 hypothetical protein singleton unknown function unknown function 1 14529 14954
YP_002875640.1 NC_012662_p16 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 11686 12279
YP_002875636.1 NC_012662_p12 hypothetical protein singleton unknown function unknown function 1 7990 8232
YP_002875654.1 NC_012662_p30 tail tubular protein A phrog_446 tail protein tail 1 24171 24731
YP_002875668.1 NC_012662_p44 hypothetical protein singleton unknown function unknown function 1 42616 42708