| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_012662 |
Definition |
Vibrio phage VP93, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Maculvirus; Vibrio virus VP93. |
DB of origin |
REFSEQ |
Length |
43931 |
Host Name |
Vibrio parahaemolyticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
44 |
%GC |
49.1 |
Number of singletons |
18 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002875628.1 | NC_012662_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1600 | 1749 |
| YP_002875661.1 | NC_012662_p37 | DNA maturase A | phrog_891 | terminase small subunit | head and packaging | 1 | 38112 | 38411 |
| YP_002875649.1 | NC_012662_p25 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 17413 | 19863 |
| YP_002875641.1 | NC_012662_p17 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 12481 | 13296 |
| YP_002875630.1 | NC_012662_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2452 | 4593 |
| YP_002875650.1 | NC_012662_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20301 | 20546 |
| YP_002875634.1 | NC_012662_p10 | primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 5916 | 6728 |
| YP_002875637.1 | NC_012662_p13 | hypothetical protein | phrog_6254 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 8349 | 8654 |
| YP_002875626.1 | NC_012662_p2 | hypothetical protein | phrog_5277 | unknown function | unknown function | 1 | 741 | 1277 |
| YP_002875665.1 | NC_012662_p41 | hypothetical protein | phrog_894 | endolysin | lysis | 1 | 41347 | 41760 |
| YP_002875651.1 | NC_012662_p27 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 20555 | 22087 |
| YP_002875662.1 | NC_012662_p38 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 38536 | 40341 |
| YP_002875642.1 | NC_012662_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13343 | 13675 |
| YP_002875667.1 | NC_012662_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42239 | 42571 |
| YP_002875664.1 | NC_012662_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40754 | 41338 |
| YP_002875627.1 | NC_012662_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1279 | 1590 |
| YP_002875646.1 | NC_012662_p22 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14957 | 15907 |
| YP_002875648.1 | NC_012662_p24 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 16643 | 17227 |
| YP_002875666.1 | NC_012662_p42 | hypothetical protein | phrog_322 | unknown function | unknown function | 1 | 41753 | 42121 |
| YP_002875659.1 | NC_012662_p35 | tail fiber protein | singleton | unknown function | unknown function | 1 | 34750 | 35361 |
| YP_002875660.1 | NC_012662_p36 | glycosyl hydrolase | singleton | unknown function | unknown function | 1 | 35370 | 38102 |
| YP_002875655.1 | NC_012662_p31 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 24741 | 27083 |
| YP_002875647.1 | NC_012662_p23 | endonuclease | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 16087 | 16527 |
| YP_002875656.1 | NC_012662_p32 | hypothetical protein | phrog_4295 | internal virion protein | head and packaging | 1 | 27093 | 27839 |
| YP_002875629.1 | NC_012662_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1830 | 2411 |
| YP_002875653.1 | NC_012662_p29 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 22967 | 23965 |
| YP_002875625.1 | NC_012662_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 425 | 688 |
| YP_002875658.1 | NC_012662_p34 | internal core protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 30577 | 34431 |
| YP_002875663.1 | NC_012662_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40446 | 40745 |
| YP_002875632.1 | NC_012662_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5518 | 5697 |
| YP_002875644.1 | NC_012662_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14316 | 14519 |
| YP_002875638.1 | NC_012662_p14 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 8651 | 11086 |
| YP_002875635.1 | NC_012662_p11 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 6710 | 7990 |
| YP_002875639.1 | NC_012662_p15 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 11102 | 11677 |
| YP_002875652.1 | NC_012662_p28 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 22087 | 22902 |
| YP_002875633.1 | NC_012662_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5752 | 5916 |
| YP_002875643.1 | NC_012662_p19 | hypothetical protein | phrog_1992 | MazG-like pyrophosphatase | other | 1 | 13687 | 14316 |
| YP_002875631.1 | NC_012662_p7 | peptidase | phrog_4191 | peptidase | other | 1 | 4619 | 5521 |
| YP_002875657.1 | NC_012662_p33 | hypothetical protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 27849 | 30527 |
| YP_002875645.1 | NC_012662_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14529 | 14954 |
| YP_002875640.1 | NC_012662_p16 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 11686 | 12279 |
| YP_002875636.1 | NC_012662_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7990 | 8232 |
| YP_002875654.1 | NC_012662_p30 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 24171 | 24731 |
| YP_002875668.1 | NC_012662_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42616 | 42708 |