Genomic map of Silicibacter phage DSS3phi2 (NC_012697)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_012697
Definition
Roseophage DSS3P2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Baltimorevirus; unclassified Baltimorevirus.
DB of origin
REFSEQ
Length
74611
Host Name
Ruegeria pomeroyi
Host domain
Bacteria
Is prophage?
undef
Number of proteins
81
%GC
47.91
Number of singletons
6
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002899053.1 NC_012697_p43 N4 gp22-like protein phrog_1872 endonuclease DNA, RNA and nucleotide metabolism 1 24085 24393
YP_002899024.1 NC_012697_p14 hypothetical protein phrog_30426 unknown function unknown function 1 5260 5457
YP_002899089.1 NC_012697_p79 hypothetical protein phrog_6368 unknown function unknown function 1 71918 72892
YP_002899021.1 NC_012697_p11 hypothetical protein phrog_31872 unknown function unknown function 1 4544 4699
YP_002899072.1 NC_012697_p62 N4 gp52-like protein phrog_2646 unknown function unknown function -1 52945 53409
YP_002899063.1 NC_012697_p53 hypothetical protein phrog_5154 unknown function unknown function 1 33243 33611
YP_002899041.1 NC_012697_p31 hypothetical protein phrog_1761 unknown function unknown function 1 14698 14919
YP_002899087.1 NC_012697_p77 hypothetical protein phrog_13099 virion structural protein head and packaging 1 69275 69595
YP_002899069.1 NC_012697_p59 hypothetical protein phrog_22866 unknown function unknown function 1 39356 39547
YP_002899036.1 NC_012697_p26 hypothetical protein phrog_20493 unknown function unknown function 1 11479 11766
YP_002899086.1 NC_012697_p76 N4 gp69-like protein phrog_2109 unknown function unknown function -1 68512 69201
YP_002899044.1 NC_012697_p34 hypothetical protein phrog_4368 unknown function unknown function 1 16013 16519
YP_002899078.1 NC_012697_p68 hypothetical protein phrog_2346 unknown function unknown function -1 61289 61672
YP_002899028.1 NC_012697_p18 hypothetical protein phrog_12776 unknown function unknown function 1 7184 7387
YP_002899051.1 NC_012697_p41 RIIA-like protein phrog_2979 RIIA lysis inhibitor lysis 1 19890 22478
YP_002899075.1 NC_012697_p65 N4 gp55-like protein phrog_2130 unknown function unknown function -1 57562 58317
YP_002899015.1 NC_012697_p5 hypothetical protein phrog_33835 unknown function unknown function 1 2222 2482
YP_002899025.1 NC_012697_p15 hypothetical protein phrog_14069 unknown function unknown function 1 5470 5769
YP_002899071.1 NC_012697_p61 hypothetical protein phrog_14527 unknown function unknown function -1 50932 52932
YP_002899073.1 NC_012697_p63 N4 gp53-like protein phrog_2220 unknown function unknown function -1 53412 56159
YP_002899026.1 NC_012697_p16 RNA polymerase subunit phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 5766 6971
YP_002899039.1 NC_012697_p29 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 12657 13505
YP_002899014.1 NC_012697_p4 hypothetical protein singleton unknown function unknown function 1 1863 2126
YP_002899046.1 NC_012697_p36 hypothetical protein singleton unknown function unknown function 1 16936 17526
YP_002899058.1 NC_012697_p48 ribonucleoside-diphosphate redutase phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 26251 28581
YP_002899064.1 NC_012697_p54 N4 gp42-like protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism 1 33616 34611
YP_002899082.1 NC_012697_p72 hypothetical protein phrog_16098 unknown function unknown function -1 65284 65841
YP_002899033.1 NC_012697_p23 hypothetical protein phrog_8231 unknown function unknown function 1 10267 10545
YP_002899083.1 NC_012697_p73 hypothetical protein phrog_13075 unknown function unknown function -1 65838 66224
YP_002899042.1 NC_012697_p32 hypothetical protein phrog_1627 unknown function unknown function 1 15180 15512
YP_002899020.1 NC_012697_p10 hypothetical protein phrog_18488 unknown function unknown function 1 4308 4547
YP_002899077.1 NC_012697_p67 N4 gp57-like protein phrog_2120 tail length tape measure protein tail -1 59912 61255
YP_002899080.1 NC_012697_p70 hypothetical protein phrog_37303 unknown function unknown function -1 64442 64642
YP_002899011.1 NC_012697_p1 hypothetical protein phrog_14155 unknown function unknown function 1 20 274
YP_002899027.1 NC_012697_p17 hypothetical protein singleton unknown function unknown function 1 6949 7113
YP_002899084.1 NC_012697_p74 hypothetical protein phrog_2125 virion structural protein head and packaging -1 66224 66892
YP_002899067.1 NC_012697_p57 single-strand DNA binding protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 37597 38430
YP_002899034.1 NC_012697_p24 hypothetical protein phrog_28832 unknown function unknown function 1 10542 11006
YP_002899045.1 NC_012697_p35 hypothetical protein phrog_21510 unknown function unknown function 1 16538 16936
YP_002899038.1 NC_012697_p28 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 12197 12625
YP_002899090.1 NC_012697_p80 hypothetical protein phrog_30494 unknown function unknown function 1 73096 73293
YP_002899023.1 NC_012697_p13 hypothetical protein phrog_34357 unknown function unknown function 1 5055 5216
YP_002899068.1 NC_012697_p58 hypothetical protein phrog_1682 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 38427 38963
YP_002899040.1 NC_012697_p30 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 13550 14701
YP_002899013.1 NC_012697_p3 N4 gp2-like protein phrog_4099 unknown function unknown function 1 1261 1779
YP_002899018.1 NC_012697_p8 hypothetical protein singleton unknown function unknown function 1 3820 4032
YP_002899037.1 NC_012697_p27 deoxycytidylate deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 11768 12196
YP_002899043.1 NC_012697_p33 hypothetical protein phrog_4368 unknown function unknown function 1 15509 16009
YP_002899057.1 NC_012697_p47 hypothetical protein phrog_14950 unknown function unknown function 1 25827 26177
YP_002899032.1 NC_012697_p22 N4 gp25-like protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 9084 10265
YP_002899012.1 NC_012697_p2 hypothetical protein singleton unknown function unknown function 1 497 1063
YP_002899035.1 NC_012697_p25 hypothetical protein phrog_16467 unknown function unknown function 1 11003 11482
YP_002899050.1 NC_012697_p40 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 19403 19720
YP_002899074.1 NC_012697_p64 N4 gp54-like protein phrog_2050 virion structural protein head and packaging -1 56172 57524
YP_002899019.1 NC_012697_p9 hypothetical protein singleton unknown function unknown function 1 4029 4169
YP_002899062.1 NC_012697_p52 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 30616 33246
YP_002899049.1 NC_012697_p39 hypothetical protein phrog_671 nucleotide pyrophosphohydrolase other 1 18861 19385
YP_002899052.1 NC_012697_p42 RIIB-like protein phrog_2886 RIIB lysis inhibitor lysis 1 22498 23928
YP_002899088.1 NC_012697_p78 hypothetical protein phrog_12736 virion structural protein head and packaging 1 69595 71886
YP_002899066.1 NC_012697_p56 N4 gp44-like protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 36806 37540
YP_002899022.1 NC_012697_p12 hypothetical protein phrog_13436 unknown function unknown function 1 4705 5058
YP_002899079.1 NC_012697_p69 portal protein phrog_1216 portal protein head and packaging -1 61726 64128
YP_002899017.1 NC_012697_p7 hypothetical protein phrog_23470 unknown function unknown function 1 3487 3810
YP_002899056.1 NC_012697_p46 hypothetical protein phrog_768 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism 1 25285 25830
YP_002899061.1 NC_012697_p51 hypothetical protein phrog_4848 unknown function unknown function 1 30283 30612
YP_002899031.1 NC_012697_p21 hypothetical protein phrog_38740 unknown function unknown function 1 8909 9040
YP_002899047.1 NC_012697_p37 hypothetical protein phrog_6368 unknown function unknown function 1 17573 18568
YP_002899016.1 NC_012697_p6 RNA polymerase subunit phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 2712 3494
YP_002899091.1 NC_012697_p81 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 73245 73592
YP_002899060.1 NC_012697_p50 DNA helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 29009 30286
YP_002899059.1 NC_012697_p49 hypothetical protein phrog_34606 unknown function unknown function 1 28654 28983
YP_002899085.1 NC_012697_p75 N4 gp68-like protein phrog_38 terminase large subunit head and packaging -1 66903 68519
YP_002899065.1 NC_012697_p55 N4 gp43-like protein phrog_2135 DNA primase DNA, RNA and nucleotide metabolism 1 34604 36796
YP_002899048.1 NC_012697_p38 hypothetical protein phrog_37503 unknown function unknown function 1 18719 18886
YP_002899055.1 NC_012697_p45 hypothetical protein phrog_2072 unknown function unknown function 1 24896 25285
YP_002899076.1 NC_012697_p66 major coat protein phrog_1357 major head protein head and packaging -1 58432 59880
YP_002899070.1 NC_012697_p60 virion-encapsulated RNA polymerase phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism -1 39966 50864
YP_002899081.1 NC_012697_p71 hypothetical protein phrog_5867 endolysin lysis -1 64639 65211
YP_002899029.1 NC_012697_p19 hypothetical protein phrog_35315 unknown function unknown function 1 7487 7594
YP_002899030.1 NC_012697_p20 AAA superfamily ATPase phrog_1297 ATPase other 1 7674 8870
YP_002899054.1 NC_012697_p44 hypothetical protein phrog_23810 unknown function unknown function 1 24404 24895