| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_012697 |
Definition |
Roseophage DSS3P2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Baltimorevirus; unclassified Baltimorevirus. |
DB of origin |
REFSEQ |
Length |
74611 |
Host Name |
Ruegeria pomeroyi |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
81 |
%GC |
47.91 |
Number of singletons |
6 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_002899053.1 | NC_012697_p43 | N4 gp22-like protein | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 24085 | 24393 |
| YP_002899024.1 | NC_012697_p14 | hypothetical protein | phrog_30426 | unknown function | unknown function | 1 | 5260 | 5457 |
| YP_002899089.1 | NC_012697_p79 | hypothetical protein | phrog_6368 | unknown function | unknown function | 1 | 71918 | 72892 |
| YP_002899021.1 | NC_012697_p11 | hypothetical protein | phrog_31872 | unknown function | unknown function | 1 | 4544 | 4699 |
| YP_002899072.1 | NC_012697_p62 | N4 gp52-like protein | phrog_2646 | unknown function | unknown function | -1 | 52945 | 53409 |
| YP_002899063.1 | NC_012697_p53 | hypothetical protein | phrog_5154 | unknown function | unknown function | 1 | 33243 | 33611 |
| YP_002899041.1 | NC_012697_p31 | hypothetical protein | phrog_1761 | unknown function | unknown function | 1 | 14698 | 14919 |
| YP_002899087.1 | NC_012697_p77 | hypothetical protein | phrog_13099 | virion structural protein | head and packaging | 1 | 69275 | 69595 |
| YP_002899069.1 | NC_012697_p59 | hypothetical protein | phrog_22866 | unknown function | unknown function | 1 | 39356 | 39547 |
| YP_002899036.1 | NC_012697_p26 | hypothetical protein | phrog_20493 | unknown function | unknown function | 1 | 11479 | 11766 |
| YP_002899086.1 | NC_012697_p76 | N4 gp69-like protein | phrog_2109 | unknown function | unknown function | -1 | 68512 | 69201 |
| YP_002899044.1 | NC_012697_p34 | hypothetical protein | phrog_4368 | unknown function | unknown function | 1 | 16013 | 16519 |
| YP_002899078.1 | NC_012697_p68 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 61289 | 61672 |
| YP_002899028.1 | NC_012697_p18 | hypothetical protein | phrog_12776 | unknown function | unknown function | 1 | 7184 | 7387 |
| YP_002899051.1 | NC_012697_p41 | RIIA-like protein | phrog_2979 | RIIA lysis inhibitor | lysis | 1 | 19890 | 22478 |
| YP_002899075.1 | NC_012697_p65 | N4 gp55-like protein | phrog_2130 | unknown function | unknown function | -1 | 57562 | 58317 |
| YP_002899015.1 | NC_012697_p5 | hypothetical protein | phrog_33835 | unknown function | unknown function | 1 | 2222 | 2482 |
| YP_002899025.1 | NC_012697_p15 | hypothetical protein | phrog_14069 | unknown function | unknown function | 1 | 5470 | 5769 |
| YP_002899071.1 | NC_012697_p61 | hypothetical protein | phrog_14527 | unknown function | unknown function | -1 | 50932 | 52932 |
| YP_002899073.1 | NC_012697_p63 | N4 gp53-like protein | phrog_2220 | unknown function | unknown function | -1 | 53412 | 56159 |
| YP_002899026.1 | NC_012697_p16 | RNA polymerase subunit | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5766 | 6971 |
| YP_002899039.1 | NC_012697_p29 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 12657 | 13505 |
| YP_002899014.1 | NC_012697_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1863 | 2126 |
| YP_002899046.1 | NC_012697_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16936 | 17526 |
| YP_002899058.1 | NC_012697_p48 | ribonucleoside-diphosphate redutase | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 26251 | 28581 |
| YP_002899064.1 | NC_012697_p54 | N4 gp42-like protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 33616 | 34611 |
| YP_002899082.1 | NC_012697_p72 | hypothetical protein | phrog_16098 | unknown function | unknown function | -1 | 65284 | 65841 |
| YP_002899033.1 | NC_012697_p23 | hypothetical protein | phrog_8231 | unknown function | unknown function | 1 | 10267 | 10545 |
| YP_002899083.1 | NC_012697_p73 | hypothetical protein | phrog_13075 | unknown function | unknown function | -1 | 65838 | 66224 |
| YP_002899042.1 | NC_012697_p32 | hypothetical protein | phrog_1627 | unknown function | unknown function | 1 | 15180 | 15512 |
| YP_002899020.1 | NC_012697_p10 | hypothetical protein | phrog_18488 | unknown function | unknown function | 1 | 4308 | 4547 |
| YP_002899077.1 | NC_012697_p67 | N4 gp57-like protein | phrog_2120 | tail length tape measure protein | tail | -1 | 59912 | 61255 |
| YP_002899080.1 | NC_012697_p70 | hypothetical protein | phrog_37303 | unknown function | unknown function | -1 | 64442 | 64642 |
| YP_002899011.1 | NC_012697_p1 | hypothetical protein | phrog_14155 | unknown function | unknown function | 1 | 20 | 274 |
| YP_002899027.1 | NC_012697_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6949 | 7113 |
| YP_002899084.1 | NC_012697_p74 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | -1 | 66224 | 66892 |
| YP_002899067.1 | NC_012697_p57 | single-strand DNA binding protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 37597 | 38430 |
| YP_002899034.1 | NC_012697_p24 | hypothetical protein | phrog_28832 | unknown function | unknown function | 1 | 10542 | 11006 |
| YP_002899045.1 | NC_012697_p35 | hypothetical protein | phrog_21510 | unknown function | unknown function | 1 | 16538 | 16936 |
| YP_002899038.1 | NC_012697_p28 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 12197 | 12625 |
| YP_002899090.1 | NC_012697_p80 | hypothetical protein | phrog_30494 | unknown function | unknown function | 1 | 73096 | 73293 |
| YP_002899023.1 | NC_012697_p13 | hypothetical protein | phrog_34357 | unknown function | unknown function | 1 | 5055 | 5216 |
| YP_002899068.1 | NC_012697_p58 | hypothetical protein | phrog_1682 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 38427 | 38963 |
| YP_002899040.1 | NC_012697_p30 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 13550 | 14701 |
| YP_002899013.1 | NC_012697_p3 | N4 gp2-like protein | phrog_4099 | unknown function | unknown function | 1 | 1261 | 1779 |
| YP_002899018.1 | NC_012697_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3820 | 4032 |
| YP_002899037.1 | NC_012697_p27 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 11768 | 12196 |
| YP_002899043.1 | NC_012697_p33 | hypothetical protein | phrog_4368 | unknown function | unknown function | 1 | 15509 | 16009 |
| YP_002899057.1 | NC_012697_p47 | hypothetical protein | phrog_14950 | unknown function | unknown function | 1 | 25827 | 26177 |
| YP_002899032.1 | NC_012697_p22 | N4 gp25-like protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9084 | 10265 |
| YP_002899012.1 | NC_012697_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 497 | 1063 |
| YP_002899035.1 | NC_012697_p25 | hypothetical protein | phrog_16467 | unknown function | unknown function | 1 | 11003 | 11482 |
| YP_002899050.1 | NC_012697_p40 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 19403 | 19720 |
| YP_002899074.1 | NC_012697_p64 | N4 gp54-like protein | phrog_2050 | virion structural protein | head and packaging | -1 | 56172 | 57524 |
| YP_002899019.1 | NC_012697_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4029 | 4169 |
| YP_002899062.1 | NC_012697_p52 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 30616 | 33246 |
| YP_002899049.1 | NC_012697_p39 | hypothetical protein | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 18861 | 19385 |
| YP_002899052.1 | NC_012697_p42 | RIIB-like protein | phrog_2886 | RIIB lysis inhibitor | lysis | 1 | 22498 | 23928 |
| YP_002899088.1 | NC_012697_p78 | hypothetical protein | phrog_12736 | virion structural protein | head and packaging | 1 | 69595 | 71886 |
| YP_002899066.1 | NC_012697_p56 | N4 gp44-like protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 36806 | 37540 |
| YP_002899022.1 | NC_012697_p12 | hypothetical protein | phrog_13436 | unknown function | unknown function | 1 | 4705 | 5058 |
| YP_002899079.1 | NC_012697_p69 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 61726 | 64128 |
| YP_002899017.1 | NC_012697_p7 | hypothetical protein | phrog_23470 | unknown function | unknown function | 1 | 3487 | 3810 |
| YP_002899056.1 | NC_012697_p46 | hypothetical protein | phrog_768 | DprA-like DNA recombination-mediator protein | DNA, RNA and nucleotide metabolism | 1 | 25285 | 25830 |
| YP_002899061.1 | NC_012697_p51 | hypothetical protein | phrog_4848 | unknown function | unknown function | 1 | 30283 | 30612 |
| YP_002899031.1 | NC_012697_p21 | hypothetical protein | phrog_38740 | unknown function | unknown function | 1 | 8909 | 9040 |
| YP_002899047.1 | NC_012697_p37 | hypothetical protein | phrog_6368 | unknown function | unknown function | 1 | 17573 | 18568 |
| YP_002899016.1 | NC_012697_p6 | RNA polymerase subunit | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2712 | 3494 |
| YP_002899091.1 | NC_012697_p81 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 73245 | 73592 |
| YP_002899060.1 | NC_012697_p50 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 29009 | 30286 |
| YP_002899059.1 | NC_012697_p49 | hypothetical protein | phrog_34606 | unknown function | unknown function | 1 | 28654 | 28983 |
| YP_002899085.1 | NC_012697_p75 | N4 gp68-like protein | phrog_38 | terminase large subunit | head and packaging | -1 | 66903 | 68519 |
| YP_002899065.1 | NC_012697_p55 | N4 gp43-like protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 34604 | 36796 |
| YP_002899048.1 | NC_012697_p38 | hypothetical protein | phrog_37503 | unknown function | unknown function | 1 | 18719 | 18886 |
| YP_002899055.1 | NC_012697_p45 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 24896 | 25285 |
| YP_002899076.1 | NC_012697_p66 | major coat protein | phrog_1357 | major head protein | head and packaging | -1 | 58432 | 59880 |
| YP_002899070.1 | NC_012697_p60 | virion-encapsulated RNA polymerase | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 39966 | 50864 |
| YP_002899081.1 | NC_012697_p71 | hypothetical protein | phrog_5867 | endolysin | lysis | -1 | 64639 | 65211 |
| YP_002899029.1 | NC_012697_p19 | hypothetical protein | phrog_35315 | unknown function | unknown function | 1 | 7487 | 7594 |
| YP_002899030.1 | NC_012697_p20 | AAA superfamily ATPase | phrog_1297 | ATPase | other | 1 | 7674 | 8870 |
| YP_002899054.1 | NC_012697_p44 | hypothetical protein | phrog_23810 | unknown function | unknown function | 1 | 24404 | 24895 |