Genomic map of Staphylococcus phage phiPVL-CN125 (NC_012784)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_012784
Definition
Staphylococcus phage phiPVL-CN125, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus; unclassified Biseptimavirus.
DB of origin
REFSEQ
Length
44492
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
65
%GC
33.56
Number of singletons
5
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_002939688.1 NC_012784_p20 hypothetical protein phrog_398 unknown function unknown function 1 10281 10952
YP_002939690.1 NC_012784_p22 hypothetical protein phrog_22283 unknown function unknown function 1 11499 11906
YP_002939680.1 NC_012784_p12 hypothetical protein phrog_6623 unknown function unknown function 1 7002 7328
YP_002939709.1 NC_012784_p41 terminase large subunit phrog_9 terminase large subunit head and packaging 1 20133 21827
YP_002939712.1 NC_012784_p44 prohead protease phrog_80 head maturation protease head and packaging 1 23290 23874
YP_002939733.1 NC_012784_p65 Panton-Valentine leukocidin chain F precursor phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 42604 43581
YP_002939673.1 NC_012784_p5 hypothetical protein phrog_2899 anti-repressor Ant transcription regulation 1 3613 3954
YP_002939691.1 NC_012784_p23 hypothetical protein phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 1 11899 12621
YP_002939722.1 NC_012784_p54 hypothetical protein phrog_5471 unknown function unknown function 1 33176 33817
YP_002939684.1 NC_012784_p16 hypothetical protein phrog_946 unknown function unknown function 1 8690 8911
YP_002939706.1 NC_012784_p38 hypothetical protein phrog_229 MazG-like pyrophosphatase other 1 18721 19173
YP_002939681.1 NC_012784_p13 DNA-binding protein phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 1 7573 7836
YP_002939678.1 NC_012784_p10 anti-repressor phrog_63 anti-repressor Ant transcription regulation 1 5743 6495
YP_002939671.1 NC_012784_p3 hypothetical protein phrog_28470 unknown function unknown function 1 2780 2977
YP_002939696.1 NC_012784_p28 hypothetical protein phrog_236 nucleotide kinase other 1 14766 15023
YP_002939717.1 NC_012784_p49 hypothetical protein phrog_78 tail terminator connector 1 26440 26820
YP_002939719.1 NC_012784_p51 hypothetical protein phrog_187 head-tail adaptor connector 1 27839 28285
YP_002939669.1 NC_012784_p1 phage integrase phrog_1 integrase integration and excision -1 231 1436
YP_002939705.1 NC_012784_p37 hypothetical protein phrog_1058 unknown function unknown function 1 18100 18606
YP_002939689.1 NC_012784_p21 hypothetical protein phrog_1090 unknown function unknown function -1 11091 11372
YP_002939703.1 NC_012784_p35 hypothetical protein phrog_5652 unknown function unknown function 1 17227 17877
YP_002939714.1 NC_012784_p46 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 25412 25744
YP_002939702.1 NC_012784_p34 hypothetical protein phrog_3885 unknown function unknown function 1 16710 16916
YP_002939698.1 NC_012784_p30 hypothetical protein phrog_258 virulence associated other 1 15241 15483
YP_002939721.1 NC_012784_p53 tail length tape measure protein phrog_167 tail length tape measure protein tail 1 28523 32845
YP_002939683.1 NC_012784_p15 hypothetical protein phrog_401 unknown function unknown function 1 8420 8680
YP_002939711.1 NC_012784_p43 portal protein phrog_12 portal protein head and packaging 1 21972 23297
YP_002939707.1 NC_012784_p39 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 19189 19533
YP_002939715.1 NC_012784_p47 hypothetical protein phrog_25 head closure Hc1 connector 1 25731 26066
YP_002939731.1 NC_012784_p63 amidase phrog_489 endolysin lysis 1 39820 41274
YP_002939724.1 NC_012784_p56 structural protein singleton unknown function unknown function 1 34771 35658
YP_002939695.1 NC_012784_p27 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 14395 14769
YP_002939679.1 NC_012784_p11 hypothetical protein phrog_6175 unknown function unknown function 1 6508 6768
YP_002939675.1 NC_012784_p7 hypothetical protein phrog_3505 unknown function unknown function -1 4996 5205
YP_002939725.1 NC_012784_p57 structural protein singleton unknown function unknown function 1 35885 36745
YP_002939728.1 NC_012784_p60 structural protein singleton unknown function unknown function 1 37791 38339
YP_002939718.1 NC_012784_p50 hypothetical protein phrog_88 major tail protein tail 1 26821 27774
YP_002939713.1 NC_012784_p45 capsid protein phrog_10 major head protein head and packaging 1 23962 25209
YP_002939726.1 NC_012784_p58 structural protein singleton unknown function unknown function 1 37080 37259
YP_002939682.1 NC_012784_p14 hypothetical protein phrog_2182 unknown function unknown function 1 8098 8415
YP_002939716.1 NC_012784_p48 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 26066 26443
YP_002939699.1 NC_012784_p31 hypothetical protein phrog_266 unknown function unknown function 1 15524 15772
YP_002939685.1 NC_012784_p17 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8904 9491
YP_002939674.1 NC_012784_p6 hypothetical protein phrog_847 anti-repressor Ant transcription regulation 1 4405 4848
YP_002939727.1 NC_012784_p59 structural protein singleton unknown function unknown function 1 37475 37762
YP_002939687.1 NC_012784_p19 single strand DNA binding protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 9714 10268
YP_002939701.1 NC_012784_p33 hypothetical protein phrog_2027 unknown function unknown function 1 16320 16556
YP_002939672.1 NC_012784_p4 transcription regulator phrog_3 transcriptional repressor transcription regulation 1 3343 3597
YP_002939720.1 NC_012784_p52 hypothetical protein phrog_15504 unknown function unknown function 1 28360 28467
YP_002939710.1 NC_012784_p42 hypothetical protein phrog_1142 unknown function unknown function 1 21802 22041
YP_002939708.1 NC_012784_p40 terminase small subunit phrog_83 terminase small subunit head and packaging 1 19663 20130
YP_002939694.1 NC_012784_p26 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 13800 14204
YP_002939676.1 NC_012784_p8 hypothetical protein phrog_7496 unknown function unknown function 1 5262 5453
YP_002939692.1 NC_012784_p24 hypothetical protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 12631 13404
YP_002939670.1 NC_012784_p2 Na/K ATPase phrog_716 Na/K ATPase other 1 1562 2176
YP_002939729.1 NC_012784_p61 hypothetical protein phrog_1747 unknown function unknown function 1 38663 38950
YP_002939693.1 NC_012784_p25 hypothetical protein phrog_809 transcriptional regulator transcription regulation 1 13398 13556
YP_002939723.1 NC_012784_p55 hypothetical protein phrog_202 distal tail protein Dit tail 1 33819 34667
YP_002939700.1 NC_012784_p32 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 15747 16274
YP_002939730.1 NC_012784_p62 holin phrog_263 holin lysis 1 39507 39809
YP_002939677.1 NC_012784_p9 hypothetical protein phrog_6634 unknown function unknown function -1 5455 5682
YP_002939686.1 NC_012784_p18 hypothetical protein phrog_32104 unknown function unknown function 1 9505 9684
YP_002939732.1 NC_012784_p64 Panton-Valentine leukocidin chain S precursor phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 41664 42602
YP_002939704.1 NC_012784_p36 hypothetical protein phrog_386 unknown function unknown function 1 17874 18077
YP_002939697.1 NC_012784_p29 hypothetical protein phrog_987 unknown function unknown function 1 15026 15226