Genomic map of Lactococcus virus CB14 (NC_013152)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_013152
Definition
Lactococcus phage CB14, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus.
DB of origin
REFSEQ
Length
29459
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
34.8
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_003127135.1 NC_013152_p2 hypothetical protein phrog_4501 unknown function unknown function 1 777 1007
YP_003127185.1 NC_013152_p52 hypothetical protein phrog_6252 unknown function unknown function 1 29241 29372
YP_003127164.1 NC_013152_p31 hypothetical protein phrog_1508 unknown function unknown function -1 21104 21223
YP_003127170.1 NC_013152_p37 hypothetical protein phrog_1295 unknown function unknown function -1 22763 22975
YP_003127161.1 NC_013152_p28 hypothetical protein phrog_2530 unknown function unknown function -1 20233 20424
YP_003127169.1 NC_013152_p36 hypothetical protein phrog_1317 unknown function unknown function -1 22254 22766
YP_003127172.1 NC_013152_p39 hypothetical protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 23354 23977
YP_003127183.1 NC_013152_p50 Holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 28178 28660
YP_003127151.1 NC_013152_p18 hypothetical protein phrog_1432 tail associated lysin tail 1 15162 16289
YP_003127137.1 NC_013152_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2631 2915
YP_003127166.1 NC_013152_p33 hypothetical protein phrog_4546 unknown function unknown function -1 21524 21634
YP_003127165.1 NC_013152_p32 hypothetical protein phrog_1825 DNA methyltransferase other -1 21281 21523
YP_003127155.1 NC_013152_p22 endolysin phrog_670 endolysin lysis 1 17743 18447
YP_003127146.1 NC_013152_p13 major capsid protein phrog_1433 major tail protein tail 1 9504 10409
YP_003127159.1 NC_013152_p26 hypothetical protein phrog_1441 unknown function unknown function -1 19888 20055
YP_003127138.1 NC_013152_p5 portal protein phrog_12 portal protein head and packaging 1 2928 4064
YP_003127150.1 NC_013152_p17 hypothetical protein phrog_1424 tail protein tail 1 14266 15162
YP_003127156.1 NC_013152_p23 hypothetical protein phrog_3775 transglycosylase other -1 18892 19041
YP_003127157.1 NC_013152_p24 hypothetical protein phrog_1430 unknown function unknown function -1 19102 19368
YP_003127140.1 NC_013152_p7 minor structural protein phrog_1393 minor head protein head and packaging 1 4574 5755
YP_003127176.1 NC_013152_p43 hypothetical protein phrog_1405 unknown function unknown function -1 25024 25281
YP_003127144.1 NC_013152_p11 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6682 7047
YP_003127182.1 NC_013152_p49 hypothetical protein phrog_1436 unknown function unknown function 1 28050 28181
YP_003127163.1 NC_013152_p30 hypothetical protein phrog_1225 unknown function unknown function -1 20796 21104
YP_003127154.1 NC_013152_p21 holin phrog_1379 unknown function unknown function 1 17393 17746
YP_003127180.1 NC_013152_p47 hypothetical protein phrog_1656 unknown function unknown function -1 27598 27786
YP_003127147.1 NC_013152_p14 hypothetical protein phrog_1420 virion structural protein head and packaging 1 10460 10735
YP_003127142.1 NC_013152_p9 hypothetical protein phrog_1429 virion structural protein head and packaging 1 6039 6353
YP_003127174.1 NC_013152_p41 hypothetical protein phrog_1449 unknown function unknown function -1 24461 24727
YP_003127175.1 NC_013152_p42 hypothetical protein phrog_1632 unknown function unknown function -1 24684 24971
YP_003127171.1 NC_013152_p38 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 22991 23350
YP_003127149.1 NC_013152_p16 tape measure protein phrog_58 tail length tape measure protein tail 1 11267 14266
YP_003127160.1 NC_013152_p27 hypothetical protein phrog_1820 unknown function unknown function -1 20055 20231
YP_003127143.1 NC_013152_p10 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6350 6691
YP_003127139.1 NC_013152_p6 prohead protease phrog_80 head maturation protease head and packaging 1 4045 4581
YP_003127167.1 NC_013152_p34 hypothetical protein phrog_1919 unknown function unknown function -1 21669 21983
YP_003127179.1 NC_013152_p46 hypothetical protein phrog_7915 unknown function unknown function -1 26455 27147
YP_003127145.1 NC_013152_p12 neck passage structure protein phrog_7918 neck passage structure protein connector 1 7104 9308
YP_003127173.1 NC_013152_p40 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 23974 24474
YP_003127178.1 NC_013152_p45 hypothetical protein phrog_4505 unknown function unknown function -1 26228 26413
YP_003127162.1 NC_013152_p29 hypothetical protein phrog_1509 unknown function unknown function -1 20466 20723
YP_003127184.1 NC_013152_p51 hypothetical protein phrog_1652 unknown function unknown function 1 28657 28824
YP_003127148.1 NC_013152_p15 hypothetical protein phrog_1421 virion structural protein head and packaging 1 10755 11267
YP_003127134.1 NC_013152_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 256 780
YP_003127168.1 NC_013152_p35 hypothetical protein phrog_11716 unknown function unknown function -1 21983 22174
YP_003127181.1 NC_013152_p48 hypothetical protein phrog_1952 unknown function unknown function 1 27917 28045
YP_003127153.1 NC_013152_p20 receptor binding protein phrog_1630 receptor binding tail protein tail 1 16562 17371
YP_003127136.1 NC_013152_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1019 2641
YP_003127177.1 NC_013152_p44 DNA polymerase subunit phrog_1284 unknown function unknown function -1 25274 26170
YP_003127152.1 NC_013152_p19 hypothetical protein phrog_1434 unknown function unknown function 1 16279 16572
YP_003127158.1 NC_013152_p25 hypothetical protein phrog_1415 unknown function unknown function -1 19541 19888
YP_003127141.1 NC_013152_p8 hypothetical protein phrog_1428 head-tail connector protein connector 1 5776 6039