| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_013152 |
Definition |
Lactococcus phage CB14, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus. |
DB of origin |
REFSEQ |
Length |
29459 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
34.8 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_003127135.1 | NC_013152_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 777 | 1007 |
| YP_003127185.1 | NC_013152_p52 | hypothetical protein | phrog_6252 | unknown function | unknown function | 1 | 29241 | 29372 |
| YP_003127164.1 | NC_013152_p31 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 21104 | 21223 |
| YP_003127170.1 | NC_013152_p37 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 22763 | 22975 |
| YP_003127161.1 | NC_013152_p28 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 20233 | 20424 |
| YP_003127169.1 | NC_013152_p36 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 22254 | 22766 |
| YP_003127172.1 | NC_013152_p39 | hypothetical protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23354 | 23977 |
| YP_003127183.1 | NC_013152_p50 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28178 | 28660 |
| YP_003127151.1 | NC_013152_p18 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 15162 | 16289 |
| YP_003127137.1 | NC_013152_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2631 | 2915 |
| YP_003127166.1 | NC_013152_p33 | hypothetical protein | phrog_4546 | unknown function | unknown function | -1 | 21524 | 21634 |
| YP_003127165.1 | NC_013152_p32 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21281 | 21523 |
| YP_003127155.1 | NC_013152_p22 | endolysin | phrog_670 | endolysin | lysis | 1 | 17743 | 18447 |
| YP_003127146.1 | NC_013152_p13 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 9504 | 10409 |
| YP_003127159.1 | NC_013152_p26 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19888 | 20055 |
| YP_003127138.1 | NC_013152_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2928 | 4064 |
| YP_003127150.1 | NC_013152_p17 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 14266 | 15162 |
| YP_003127156.1 | NC_013152_p23 | hypothetical protein | phrog_3775 | transglycosylase | other | -1 | 18892 | 19041 |
| YP_003127157.1 | NC_013152_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 19102 | 19368 |
| YP_003127140.1 | NC_013152_p7 | minor structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4574 | 5755 |
| YP_003127176.1 | NC_013152_p43 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25024 | 25281 |
| YP_003127144.1 | NC_013152_p11 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6682 | 7047 |
| YP_003127182.1 | NC_013152_p49 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 28050 | 28181 |
| YP_003127163.1 | NC_013152_p30 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20796 | 21104 |
| YP_003127154.1 | NC_013152_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17393 | 17746 |
| YP_003127180.1 | NC_013152_p47 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 27598 | 27786 |
| YP_003127147.1 | NC_013152_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10460 | 10735 |
| YP_003127142.1 | NC_013152_p9 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6039 | 6353 |
| YP_003127174.1 | NC_013152_p41 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24461 | 24727 |
| YP_003127175.1 | NC_013152_p42 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 24684 | 24971 |
| YP_003127171.1 | NC_013152_p38 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 22991 | 23350 |
| YP_003127149.1 | NC_013152_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11267 | 14266 |
| YP_003127160.1 | NC_013152_p27 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 20055 | 20231 |
| YP_003127143.1 | NC_013152_p10 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6350 | 6691 |
| YP_003127139.1 | NC_013152_p6 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 4045 | 4581 |
| YP_003127167.1 | NC_013152_p34 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 21669 | 21983 |
| YP_003127179.1 | NC_013152_p46 | hypothetical protein | phrog_7915 | unknown function | unknown function | -1 | 26455 | 27147 |
| YP_003127145.1 | NC_013152_p12 | neck passage structure protein | phrog_7918 | neck passage structure protein | connector | 1 | 7104 | 9308 |
| YP_003127173.1 | NC_013152_p40 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23974 | 24474 |
| YP_003127178.1 | NC_013152_p45 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 26228 | 26413 |
| YP_003127162.1 | NC_013152_p29 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 20466 | 20723 |
| YP_003127184.1 | NC_013152_p51 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 28657 | 28824 |
| YP_003127148.1 | NC_013152_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10755 | 11267 |
| YP_003127134.1 | NC_013152_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 256 | 780 |
| YP_003127168.1 | NC_013152_p35 | hypothetical protein | phrog_11716 | unknown function | unknown function | -1 | 21983 | 22174 |
| YP_003127181.1 | NC_013152_p48 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 27917 | 28045 |
| YP_003127153.1 | NC_013152_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16562 | 17371 |
| YP_003127136.1 | NC_013152_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1019 | 2641 |
| YP_003127177.1 | NC_013152_p44 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 25274 | 26170 |
| YP_003127152.1 | NC_013152_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16279 | 16572 |
| YP_003127158.1 | NC_013152_p25 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19541 | 19888 |
| YP_003127141.1 | NC_013152_p8 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5776 | 6039 |