Genomic map of Lactococcus virus CB13 (NC_013155)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_013155
Definition
Lactococcus phage CB13, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus.
DB of origin
REFSEQ
Length
32182
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
34.69
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_003127338.1 NC_013155_p51 hypothetical protein phrog_1952 unknown function unknown function 1 30669 30797
YP_003127293.1 NC_013155_p6 prohead protease phrog_80 head maturation protease head and packaging 1 4036 4572
YP_003127322.1 NC_013155_p35 hypothetical protein phrog_1825 DNA methyltransferase other -1 24404 24652
YP_003127339.1 NC_013155_p52 hypothetical protein phrog_1436 unknown function unknown function 1 30802 30933
YP_003127288.1 NC_013155_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 247 771
YP_003127290.1 NC_013155_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1010 2632
YP_003127340.1 NC_013155_p53 Holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 30930 31409
YP_003127333.1 NC_013155_p46 hypothetical protein phrog_3604 unknown function unknown function -1 27827 27994
YP_003127301.1 NC_013155_p14 hypothetical protein phrog_1420 virion structural protein head and packaging 1 10346 10621
YP_003127299.1 NC_013155_p12 neck passage structure protein phrog_7918 neck passage structure protein connector 1 7095 9266
YP_003127341.1 NC_013155_p54 hypothetical protein phrog_1652 unknown function unknown function 1 31410 31577
YP_003127337.1 NC_013155_p50 hypothetical protein phrog_1656 unknown function unknown function -1 30350 30538
YP_003127335.1 NC_013155_p48 hypothetical protein phrog_4505 unknown function unknown function -1 28995 29180
YP_003127296.1 NC_013155_p9 hypothetical protein phrog_1429 virion structural protein head and packaging 1 6030 6344
YP_003127312.1 NC_013155_p25 hypothetical protein phrog_1415 unknown function unknown function -1 19406 19753
YP_003127332.1 NC_013155_p45 hypothetical protein phrog_1405 unknown function unknown function -1 27586 27840
YP_003127310.1 NC_013155_p23 hypothetical protein phrog_3874 transglycosylase other -1 18400 18855
YP_003127313.1 NC_013155_p26 hypothetical protein phrog_1441 unknown function unknown function -1 19753 19920
YP_003127325.1 NC_013155_p38 hypothetical protein phrog_11716 unknown function unknown function -1 25113 25301
YP_003127327.1 NC_013155_p40 hypothetical protein phrog_1295 unknown function unknown function -1 25891 26106
YP_003127311.1 NC_013155_p24 hypothetical protein phrog_1430 unknown function unknown function -1 18964 19233
YP_003127329.1 NC_013155_p42 sak protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 26482 27036
YP_003127330.1 NC_013155_p43 hypothetical protein phrog_1449 unknown function unknown function -1 27005 27289
YP_003127298.1 NC_013155_p11 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6673 7038
YP_003127336.1 NC_013155_p49 hypothetical protein phrog_7915 unknown function unknown function -1 29195 29899
YP_003127319.1 NC_013155_p32 hypothetical protein phrog_1225 unknown function unknown function -1 23020 23334
YP_003127317.1 NC_013155_p30 single-stranded DNA specific exonuclease phrog_2484 RecJ-like ssDNA exonuclease DNA, RNA and nucleotide metabolism -1 20671 22452
YP_003127308.1 NC_013155_p21 holin phrog_1379 unknown function unknown function 1 17270 17623
YP_003127295.1 NC_013155_p8 hypothetical protein phrog_1428 head-tail connector protein connector 1 5767 6030
YP_003127292.1 NC_013155_p5 portal protein phrog_12 portal protein head and packaging 1 2919 4055
YP_003127316.1 NC_013155_p29 hypothetical protein phrog_1509 unknown function unknown function -1 20343 20600
YP_003127303.1 NC_013155_p16 tape measure protein phrog_58 tail length tape measure protein tail 1 11153 14143
YP_003127302.1 NC_013155_p15 hypothetical protein phrog_1421 virion structural protein head and packaging 1 10641 11153
YP_003127289.1 NC_013155_p2 hypothetical protein phrog_4501 unknown function unknown function 1 768 998
YP_003127334.1 NC_013155_p47 DNA polymerase subunit phrog_1284 unknown function unknown function -1 27987 28937
YP_003127324.1 NC_013155_p37 hypothetical protein phrog_1919 unknown function unknown function -1 24799 25113
YP_003127304.1 NC_013155_p17 hypothetical protein phrog_1424 tail protein tail 1 14143 15039
YP_003127342.1 NC_013155_p55 hypothetical protein phrog_6252 unknown function unknown function 1 31965 32096
YP_003127307.1 NC_013155_p20 receptor binding protein phrog_1630 receptor binding tail protein tail 1 16439 17248
YP_003127315.1 NC_013155_p28 hypothetical protein phrog_2530 unknown function unknown function -1 20110 20301
YP_003127314.1 NC_013155_p27 hypothetical protein phrog_1820 unknown function unknown function -1 19920 20108
YP_003127328.1 NC_013155_p41 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 26119 26478
YP_003127306.1 NC_013155_p19 hypothetical protein phrog_1434 unknown function unknown function 1 16156 16449
YP_003127321.1 NC_013155_p34 hypothetical protein phrog_56 DNA methyltransferase other -1 23512 24411
YP_003127326.1 NC_013155_p39 hypothetical protein phrog_1317 unknown function unknown function -1 25382 25894
YP_003127318.1 NC_013155_p31 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 22575 23057
YP_003127331.1 NC_013155_p44 hypothetical protein phrog_1632 unknown function unknown function -1 27243 27533
YP_003127297.1 NC_013155_p10 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6341 6682
YP_003127305.1 NC_013155_p18 hypothetical protein phrog_1432 tail associated lysin tail 1 15039 16166
YP_003127294.1 NC_013155_p7 minor structural protein phrog_1393 minor head protein head and packaging 1 4565 5746
YP_003127291.1 NC_013155_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2622 2906
YP_003127323.1 NC_013155_p36 hypothetical protein phrog_4546 unknown function unknown function -1 24653 24763
YP_003127300.1 NC_013155_p13 major capsid protein phrog_1433 major tail protein tail 1 9401 10306
YP_003127320.1 NC_013155_p33 hypothetical protein phrog_1508 unknown function unknown function -1 23335 23454
YP_003127309.1 NC_013155_p22 endolysin phrog_670 endolysin lysis 1 17620 18324