| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_013155 |
Definition |
Lactococcus phage CB13, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus. |
DB of origin |
REFSEQ |
Length |
32182 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
34.69 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_003127338.1 | NC_013155_p51 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 30669 | 30797 |
| YP_003127293.1 | NC_013155_p6 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 4036 | 4572 |
| YP_003127322.1 | NC_013155_p35 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 24404 | 24652 |
| YP_003127339.1 | NC_013155_p52 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 30802 | 30933 |
| YP_003127288.1 | NC_013155_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 247 | 771 |
| YP_003127290.1 | NC_013155_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1010 | 2632 |
| YP_003127340.1 | NC_013155_p53 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30930 | 31409 |
| YP_003127333.1 | NC_013155_p46 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 27827 | 27994 |
| YP_003127301.1 | NC_013155_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10346 | 10621 |
| YP_003127299.1 | NC_013155_p12 | neck passage structure protein | phrog_7918 | neck passage structure protein | connector | 1 | 7095 | 9266 |
| YP_003127341.1 | NC_013155_p54 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 31410 | 31577 |
| YP_003127337.1 | NC_013155_p50 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 30350 | 30538 |
| YP_003127335.1 | NC_013155_p48 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 28995 | 29180 |
| YP_003127296.1 | NC_013155_p9 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6030 | 6344 |
| YP_003127312.1 | NC_013155_p25 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19406 | 19753 |
| YP_003127332.1 | NC_013155_p45 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 27586 | 27840 |
| YP_003127310.1 | NC_013155_p23 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 18400 | 18855 |
| YP_003127313.1 | NC_013155_p26 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19753 | 19920 |
| YP_003127325.1 | NC_013155_p38 | hypothetical protein | phrog_11716 | unknown function | unknown function | -1 | 25113 | 25301 |
| YP_003127327.1 | NC_013155_p40 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 25891 | 26106 |
| YP_003127311.1 | NC_013155_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18964 | 19233 |
| YP_003127329.1 | NC_013155_p42 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 26482 | 27036 |
| YP_003127330.1 | NC_013155_p43 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 27005 | 27289 |
| YP_003127298.1 | NC_013155_p11 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6673 | 7038 |
| YP_003127336.1 | NC_013155_p49 | hypothetical protein | phrog_7915 | unknown function | unknown function | -1 | 29195 | 29899 |
| YP_003127319.1 | NC_013155_p32 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 23020 | 23334 |
| YP_003127317.1 | NC_013155_p30 | single-stranded DNA specific exonuclease | phrog_2484 | RecJ-like ssDNA exonuclease | DNA, RNA and nucleotide metabolism | -1 | 20671 | 22452 |
| YP_003127308.1 | NC_013155_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17270 | 17623 |
| YP_003127295.1 | NC_013155_p8 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5767 | 6030 |
| YP_003127292.1 | NC_013155_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2919 | 4055 |
| YP_003127316.1 | NC_013155_p29 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 20343 | 20600 |
| YP_003127303.1 | NC_013155_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11153 | 14143 |
| YP_003127302.1 | NC_013155_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10641 | 11153 |
| YP_003127289.1 | NC_013155_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 768 | 998 |
| YP_003127334.1 | NC_013155_p47 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 27987 | 28937 |
| YP_003127324.1 | NC_013155_p37 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 24799 | 25113 |
| YP_003127304.1 | NC_013155_p17 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 14143 | 15039 |
| YP_003127342.1 | NC_013155_p55 | hypothetical protein | phrog_6252 | unknown function | unknown function | 1 | 31965 | 32096 |
| YP_003127307.1 | NC_013155_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16439 | 17248 |
| YP_003127315.1 | NC_013155_p28 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 20110 | 20301 |
| YP_003127314.1 | NC_013155_p27 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19920 | 20108 |
| YP_003127328.1 | NC_013155_p41 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 26119 | 26478 |
| YP_003127306.1 | NC_013155_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16156 | 16449 |
| YP_003127321.1 | NC_013155_p34 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 23512 | 24411 |
| YP_003127326.1 | NC_013155_p39 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 25382 | 25894 |
| YP_003127318.1 | NC_013155_p31 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22575 | 23057 |
| YP_003127331.1 | NC_013155_p44 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 27243 | 27533 |
| YP_003127297.1 | NC_013155_p10 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6341 | 6682 |
| YP_003127305.1 | NC_013155_p18 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 15039 | 16166 |
| YP_003127294.1 | NC_013155_p7 | minor structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4565 | 5746 |
| YP_003127291.1 | NC_013155_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2622 | 2906 |
| YP_003127323.1 | NC_013155_p36 | hypothetical protein | phrog_4546 | unknown function | unknown function | -1 | 24653 | 24763 |
| YP_003127300.1 | NC_013155_p13 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 9401 | 10306 |
| YP_003127320.1 | NC_013155_p33 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 23335 | 23454 |
| YP_003127309.1 | NC_013155_p22 | endolysin | phrog_670 | endolysin | lysis | 1 | 17620 | 18324 |