Genomic map of Staphylococcus phage P954 (NC_013195)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_013195
Definition
Staphylococcus phage P954, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus; unclassified Biseptimavirus.
DB of origin
REFSEQ
Length
40761
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
69
%GC
33.99
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_003169642.1 NC_013195_p12 hypothetical protein phrog_2222 unknown function unknown function -1 6298 6528
YP_003169635.1 NC_013195_p5 hypothetical protein singleton unknown function unknown function -1 3226 3375
YP_003169660.1 NC_013195_p30 hypothetical protein phrog_467 unknown function unknown function 1 13763 14164
YP_003169681.1 NC_013195_p51 hypothetical protein phrog_390 Arc-like repressor transcription regulation 1 23907 24191
YP_003169633.1 NC_013195_p3 hypothetical protein singleton unknown function unknown function -1 2392 2448
YP_003169693.1 NC_013195_p63 hypothetical protein phrog_1747 unknown function unknown function 1 37170 37457
YP_003169675.1 NC_013195_p45 Zn finger domain containing protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 18389 18685
YP_003169643.1 NC_013195_p13 hypothetical protein phrog_3785 unknown function unknown function 1 6587 6715
YP_003169634.1 NC_013195_p4 hypothetical protein phrog_6600 unknown function unknown function -1 2522 3268
YP_003169678.1 NC_013195_p48 HK97 family phage portal protein phrog_12 portal protein head and packaging 1 20834 21997
YP_003169671.1 NC_013195_p41 hypothetical protein singleton unknown function unknown function 1 17197 17283
YP_003169665.1 NC_013195_p35 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 15614 15850
YP_003169658.1 NC_013195_p28 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12991 13500
YP_003169669.1 NC_013195_p39 hypothetical protein phrog_2409 unknown function unknown function 1 16661 17026
YP_003169662.1 NC_013195_p32 hypothetical protein phrog_1034 unknown function unknown function 1 14505 14813
YP_003169655.1 NC_013195_p25 DNA methyltransferase phrog_111 DNA methyltransferase other 1 11974 12399
YP_003169694.1 NC_013195_p64 hypothetical protein phrog_276 unknown function unknown function 1 37515 37811
YP_003169656.1 NC_013195_p26 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 12396 12800
YP_003169684.1 NC_013195_p54 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 24808 25212
YP_003169687.1 NC_013195_p57 hypothetical protein phrog_187 head-tail adaptor connector 1 26575 26925
YP_003169672.1 NC_013195_p42 hypothetical protein phrog_742 acetyltransferase other 1 17280 17690
YP_003169673.1 NC_013195_p43 hypothetical protein singleton unknown function unknown function 1 17683 17751
YP_003169697.1 NC_013195_p67 endolysin phrog_635 endolysin lysis 1 38615 39370
YP_003169698.1 NC_013195_p68 hypothetical protein phrog_6339 unknown function unknown function 1 39836 40012
YP_003169666.1 NC_013195_p36 hypothetical protein phrog_555 unknown function unknown function 1 15875 16111
YP_003169650.1 NC_013195_p20 hypothetical protein phrog_6493 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 9179 9934
YP_003169667.1 NC_013195_p37 hypothetical protein phrog_301 secreted protein other 1 16104 16490
YP_003169688.1 NC_013195_p58 hypothetical protein phrog_1963 unknown function unknown function 1 26976 27113
YP_003169685.1 NC_013195_p55 hypothetical protein phrog_78 tail terminator connector 1 25209 25616
YP_003169661.1 NC_013195_p31 hypothetical protein phrog_98 unknown function unknown function 1 14161 14508
YP_003169649.1 NC_013195_p19 hypothetical protein phrog_398 unknown function unknown function 1 8512 9186
YP_003169652.1 NC_013195_p22 helicase DnaB phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 10287 11528
YP_003169699.1 NC_013195_p69 hypothetical protein phrog_1758 acetyltransferase other 1 40009 40623
YP_003169676.1 NC_013195_p46 hypothetical protein phrog_1066 unknown function unknown function 1 18816 19160
YP_003169663.1 NC_013195_p33 hypothetical protein phrog_266 unknown function unknown function 1 14806 15054
YP_003169647.1 NC_013195_p17 topoisomerase phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7447 8070
YP_003169680.1 NC_013195_p50 major capsid protein a phrog_10 major head protein head and packaging 1 22742 23887
YP_003169641.1 NC_013195_p11 anti-repressor phrog_63 anti-repressor Ant transcription regulation 1 5382 6122
YP_003169653.1 NC_013195_p23 hypothetical protein phrog_3161 unknown function unknown function 1 11525 11740
YP_003169696.1 NC_013195_p66 holin phrog_297 holin lysis 1 38349 38603
YP_003169692.1 NC_013195_p62 hypothetical protein phrog_1399 unknown function unknown function 1 36971 37123
YP_003169651.1 NC_013195_p21 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 9934 10290
YP_003169659.1 NC_013195_p29 hypothetical protein phrog_258 virulence associated other 1 13501 13749
YP_003169689.1 NC_013195_p59 tail length tape measure protein phrog_167 tail length tape measure protein tail 1 27170 31699
YP_003169631.1 NC_013195_p1 phage recombinase/integrase phrog_95 integrase integration and excision -1 25 1410
YP_003169646.1 NC_013195_p16 hypothetical protein phrog_946 unknown function unknown function 1 7233 7454
YP_003169654.1 NC_013195_p24 hypothetical protein phrog_433 unknown function unknown function 1 11743 11964
YP_003169637.1 NC_013195_p7 cro repressor-like protein phrog_3 transcriptional repressor transcription regulation 1 4267 4509
YP_003169645.1 NC_013195_p15 hypothetical protein phrog_401 unknown function unknown function 1 6963 7223
YP_003169638.1 NC_013195_p8 hypothetical protein phrog_847 anti-repressor Ant transcription regulation 1 4522 4968
YP_003169682.1 NC_013195_p52 hypothetical protein phrog_749 unknown function unknown function 1 24181 24465
YP_003169632.1 NC_013195_p2 hypothetical protein phrog_1412 antitoxin mazE-like moron, auxiliary metabolic gene and host takeover -1 1601 2338
YP_003169644.1 NC_013195_p14 hypothetical protein phrog_369 unknown function unknown function 1 6708 6869
YP_003169674.1 NC_013195_p44 phage transcriptional activator phrog_36 transcriptional regulator transcription regulation 1 17738 18154
YP_003169683.1 NC_013195_p53 hypothetical protein phrog_25 head closure Hc1 connector 1 24449 24811
YP_003169677.1 NC_013195_p47 terminase large subunit phrog_9 terminase large subunit head and packaging 1 19157 20818
YP_003169679.1 NC_013195_p49 protease/scaffold protein phrog_94 head maturation protease head and packaging 1 21981 22718
YP_003169648.1 NC_013195_p18 single strand DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 8070 8498
YP_003169639.1 NC_013195_p9 hypothetical protein phrog_1263 unknown function unknown function 1 4983 5123
YP_003169657.1 NC_013195_p27 hypothetical protein phrog_299 unknown function unknown function 1 12805 12990
YP_003169686.1 NC_013195_p56 phage tail superfamily phrog_88 major tail protein tail 1 25617 26258
YP_003169695.1 NC_013195_p65 hypothetical protein phrog_3488 holin lysis 1 38003 38137
YP_003169664.1 NC_013195_p34 dUTP pyrophosphatase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 15047 15577
YP_003169636.1 NC_013195_p6 cI repressor-like protein phrog_4 transcriptional repressor transcription regulation -1 3387 4103
YP_003169670.1 NC_013195_p40 hypothetical protein phrog_1367 unknown function unknown function 1 17027 17173
YP_003169668.1 NC_013195_p38 int activator phrog_152 RinB-like transcriptional activator transcription regulation 1 16487 16660
YP_003169640.1 NC_013195_p10 hypothetical protein phrog_3505 unknown function unknown function -1 5116 5325
YP_003169691.1 NC_013195_p61 phage minor structural protein phrog_1786 minor head protein head and packaging 1 33196 36981
YP_003169690.1 NC_013195_p60 hypothetical protein phrog_202 distal tail protein Dit tail 1 31696 33180