| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_013195 |
Definition |
Staphylococcus phage P954, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus; unclassified Biseptimavirus. |
DB of origin |
REFSEQ |
Length |
40761 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
69 |
%GC |
33.99 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_003169642.1 | NC_013195_p12 | hypothetical protein | phrog_2222 | unknown function | unknown function | -1 | 6298 | 6528 |
| YP_003169635.1 | NC_013195_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3226 | 3375 |
| YP_003169660.1 | NC_013195_p30 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 13763 | 14164 |
| YP_003169681.1 | NC_013195_p51 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 23907 | 24191 |
| YP_003169633.1 | NC_013195_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2392 | 2448 |
| YP_003169693.1 | NC_013195_p63 | hypothetical protein | phrog_1747 | unknown function | unknown function | 1 | 37170 | 37457 |
| YP_003169675.1 | NC_013195_p45 | Zn finger domain containing protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 18389 | 18685 |
| YP_003169643.1 | NC_013195_p13 | hypothetical protein | phrog_3785 | unknown function | unknown function | 1 | 6587 | 6715 |
| YP_003169634.1 | NC_013195_p4 | hypothetical protein | phrog_6600 | unknown function | unknown function | -1 | 2522 | 3268 |
| YP_003169678.1 | NC_013195_p48 | HK97 family phage portal protein | phrog_12 | portal protein | head and packaging | 1 | 20834 | 21997 |
| YP_003169671.1 | NC_013195_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17197 | 17283 |
| YP_003169665.1 | NC_013195_p35 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 15614 | 15850 |
| YP_003169658.1 | NC_013195_p28 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 12991 | 13500 |
| YP_003169669.1 | NC_013195_p39 | hypothetical protein | phrog_2409 | unknown function | unknown function | 1 | 16661 | 17026 |
| YP_003169662.1 | NC_013195_p32 | hypothetical protein | phrog_1034 | unknown function | unknown function | 1 | 14505 | 14813 |
| YP_003169655.1 | NC_013195_p25 | DNA methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 11974 | 12399 |
| YP_003169694.1 | NC_013195_p64 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 37515 | 37811 |
| YP_003169656.1 | NC_013195_p26 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 12396 | 12800 |
| YP_003169684.1 | NC_013195_p54 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 24808 | 25212 |
| YP_003169687.1 | NC_013195_p57 | hypothetical protein | phrog_187 | head-tail adaptor | connector | 1 | 26575 | 26925 |
| YP_003169672.1 | NC_013195_p42 | hypothetical protein | phrog_742 | acetyltransferase | other | 1 | 17280 | 17690 |
| YP_003169673.1 | NC_013195_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17683 | 17751 |
| YP_003169697.1 | NC_013195_p67 | endolysin | phrog_635 | endolysin | lysis | 1 | 38615 | 39370 |
| YP_003169698.1 | NC_013195_p68 | hypothetical protein | phrog_6339 | unknown function | unknown function | 1 | 39836 | 40012 |
| YP_003169666.1 | NC_013195_p36 | hypothetical protein | phrog_555 | unknown function | unknown function | 1 | 15875 | 16111 |
| YP_003169650.1 | NC_013195_p20 | hypothetical protein | phrog_6493 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 9179 | 9934 |
| YP_003169667.1 | NC_013195_p37 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 16104 | 16490 |
| YP_003169688.1 | NC_013195_p58 | hypothetical protein | phrog_1963 | unknown function | unknown function | 1 | 26976 | 27113 |
| YP_003169685.1 | NC_013195_p55 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 25209 | 25616 |
| YP_003169661.1 | NC_013195_p31 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 14161 | 14508 |
| YP_003169649.1 | NC_013195_p19 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 8512 | 9186 |
| YP_003169652.1 | NC_013195_p22 | helicase DnaB | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 10287 | 11528 |
| YP_003169699.1 | NC_013195_p69 | hypothetical protein | phrog_1758 | acetyltransferase | other | 1 | 40009 | 40623 |
| YP_003169676.1 | NC_013195_p46 | hypothetical protein | phrog_1066 | unknown function | unknown function | 1 | 18816 | 19160 |
| YP_003169663.1 | NC_013195_p33 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 14806 | 15054 |
| YP_003169647.1 | NC_013195_p17 | topoisomerase | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7447 | 8070 |
| YP_003169680.1 | NC_013195_p50 | major capsid protein a | phrog_10 | major head protein | head and packaging | 1 | 22742 | 23887 |
| YP_003169641.1 | NC_013195_p11 | anti-repressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 5382 | 6122 |
| YP_003169653.1 | NC_013195_p23 | hypothetical protein | phrog_3161 | unknown function | unknown function | 1 | 11525 | 11740 |
| YP_003169696.1 | NC_013195_p66 | holin | phrog_297 | holin | lysis | 1 | 38349 | 38603 |
| YP_003169692.1 | NC_013195_p62 | hypothetical protein | phrog_1399 | unknown function | unknown function | 1 | 36971 | 37123 |
| YP_003169651.1 | NC_013195_p21 | hypothetical protein | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 9934 | 10290 |
| YP_003169659.1 | NC_013195_p29 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 13501 | 13749 |
| YP_003169689.1 | NC_013195_p59 | tail length tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 27170 | 31699 |
| YP_003169631.1 | NC_013195_p1 | phage recombinase/integrase | phrog_95 | integrase | integration and excision | -1 | 25 | 1410 |
| YP_003169646.1 | NC_013195_p16 | hypothetical protein | phrog_946 | unknown function | unknown function | 1 | 7233 | 7454 |
| YP_003169654.1 | NC_013195_p24 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 11743 | 11964 |
| YP_003169637.1 | NC_013195_p7 | cro repressor-like protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 4267 | 4509 |
| YP_003169645.1 | NC_013195_p15 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 6963 | 7223 |
| YP_003169638.1 | NC_013195_p8 | hypothetical protein | phrog_847 | anti-repressor Ant | transcription regulation | 1 | 4522 | 4968 |
| YP_003169682.1 | NC_013195_p52 | hypothetical protein | phrog_749 | unknown function | unknown function | 1 | 24181 | 24465 |
| YP_003169632.1 | NC_013195_p2 | hypothetical protein | phrog_1412 | antitoxin mazE-like | moron, auxiliary metabolic gene and host takeover | -1 | 1601 | 2338 |
| YP_003169644.1 | NC_013195_p14 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 6708 | 6869 |
| YP_003169674.1 | NC_013195_p44 | phage transcriptional activator | phrog_36 | transcriptional regulator | transcription regulation | 1 | 17738 | 18154 |
| YP_003169683.1 | NC_013195_p53 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 24449 | 24811 |
| YP_003169677.1 | NC_013195_p47 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 19157 | 20818 |
| YP_003169679.1 | NC_013195_p49 | protease/scaffold protein | phrog_94 | head maturation protease | head and packaging | 1 | 21981 | 22718 |
| YP_003169648.1 | NC_013195_p18 | single strand DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 8070 | 8498 |
| YP_003169639.1 | NC_013195_p9 | hypothetical protein | phrog_1263 | unknown function | unknown function | 1 | 4983 | 5123 |
| YP_003169657.1 | NC_013195_p27 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 12805 | 12990 |
| YP_003169686.1 | NC_013195_p56 | phage tail superfamily | phrog_88 | major tail protein | tail | 1 | 25617 | 26258 |
| YP_003169695.1 | NC_013195_p65 | hypothetical protein | phrog_3488 | holin | lysis | 1 | 38003 | 38137 |
| YP_003169664.1 | NC_013195_p34 | dUTP pyrophosphatase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 15047 | 15577 |
| YP_003169636.1 | NC_013195_p6 | cI repressor-like protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 3387 | 4103 |
| YP_003169670.1 | NC_013195_p40 | hypothetical protein | phrog_1367 | unknown function | unknown function | 1 | 17027 | 17173 |
| YP_003169668.1 | NC_013195_p38 | int activator | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 16487 | 16660 |
| YP_003169640.1 | NC_013195_p10 | hypothetical protein | phrog_3505 | unknown function | unknown function | -1 | 5116 | 5325 |
| YP_003169691.1 | NC_013195_p61 | phage minor structural protein | phrog_1786 | minor head protein | head and packaging | 1 | 33196 | 36981 |
| YP_003169690.1 | NC_013195_p60 | hypothetical protein | phrog_202 | distal tail protein Dit | tail | 1 | 31696 | 33180 |