Genomic map of Sodalis phage SO1 (NC_013600)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_013600
Definition
Sodalis phage SO-1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dhillonvirus.
DB of origin
REFSEQ
Length
45169
Host Name
Sodalis glossinidius
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
54.58
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_003344941.1 NC_013600_p6 hypothetical protein phrog_1267 Rz-like spanin lysis 1 4834 5064
YP_003344974.1 NC_013600_p39 type I self-splicing intron phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism -1 31258 32016
YP_003344942.1 NC_013600_p7 DNA polymerase III beta subunit phrog_3007 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 5082 5600
YP_003344956.1 NC_013600_p21 phage tail assembly protein phrog_32 tail assembly protein tail 1 16395 17012
YP_003344985.1 NC_013600_p50 hypothetical protein phrog_9839 unknown function unknown function 1 40834 41127
YP_003344971.1 NC_013600_p36 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 29368 29646
YP_003344986.1 NC_013600_p51 hypothetical protein phrog_12533 unknown function unknown function 1 41137 41406
YP_003344938.1 NC_013600_p3 phage minor tail protein phrog_145 portal protein head and packaging 1 2023 3543
YP_003344945.1 NC_013600_p10 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 7663 8205
YP_003344993.1 NC_013600_p58 transcriptional regulator phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 43777 44919
YP_003344944.1 NC_013600_p9 phage major head protein phrog_247 major head protein head and packaging 1 6546 7646
YP_003344967.1 NC_013600_p32 DNA cytosine-C5-methyltransferase phrog_757 DNA methyltransferase other -1 26771 27466
YP_003344979.1 NC_013600_p44 hypothetical protein phrog_9934 unknown function unknown function -1 36252 36440
YP_003344982.1 NC_013600_p47 transposase phrog_9366 transposase integration and excision 1 37573 37902
YP_003344940.1 NC_013600_p5 hypothetical protein phrog_2536 Rz-like spanin lysis 1 4623 4931
YP_003344973.1 NC_013600_p38 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 30312 33500
YP_003344954.1 NC_013600_p19 phage minor tail protein phrog_18 minor tail protein tail 1 14873 15661
YP_003344989.1 NC_013600_p54 hypothetical protein phrog_2359 holin lysis 1 42390 42680
YP_003344950.1 NC_013600_p15 hypothetical protein phrog_569 tail length tape measure protein tail 1 10537 10899
YP_003344943.1 NC_013600_p8 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 5630 6448
YP_003344939.1 NC_013600_p4 phage minor head protein phrog_241 head morphogenesis head and packaging 1 3527 4630
YP_003344975.1 NC_013600_p40 hypothetical protein phrog_10102 unknown function unknown function -1 33497 33667
YP_003344976.1 NC_013600_p41 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 33726 34511
YP_003344959.1 NC_013600_p24 phage lipoprotein phrog_4281 unknown function unknown function -1 21450 21671
YP_003344992.1 NC_013600_p57 hypothetical protein phrog_11068 unknown function unknown function 1 43417 43584
YP_003344984.1 NC_013600_p49 hypothetical protein phrog_3623 unknown function unknown function 1 40658 40837
YP_003344958.1 NC_013600_p23 hypothetical protein phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover -1 20482 21447
YP_003344965.1 NC_013600_p30 DNA ligase phrog_10530 DNA ligase DNA, RNA and nucleotide metabolism -1 25905 26369
YP_003344953.1 NC_013600_p18 phage minor tail protein phrog_9922 minor tail protein tail 1 14277 14876
YP_003344988.1 NC_013600_p53 hypothetical protein phrog_2531 unknown function unknown function 1 42049 42336
YP_003344947.1 NC_013600_p12 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 8665 9258
YP_003344936.1 NC_013600_p1 phage terminase small subunit phrog_3064 terminase head and packaging 1 55 627
YP_003344966.1 NC_013600_p31 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 26451 26774
YP_003344963.1 NC_013600_p28 hypothetical protein phrog_415 polynucleotide kinase other -1 24759 25229
YP_003344968.1 NC_013600_p33 DEXX-box helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 27463 28887
YP_003344987.1 NC_013600_p52 hypothetical protein phrog_10243 unknown function unknown function 1 41403 41927
YP_003344980.1 NC_013600_p45 hypothetical protein phrog_4965 unknown function unknown function -1 36441 36692
YP_003344949.1 NC_013600_p14 phage major tail protein phrog_584 major tail protein tail 1 9742 10467
YP_003344977.1 NC_013600_p42 hypothetical protein phrog_11211 unknown function unknown function -1 34587 34829
YP_003344994.1 NC_013600_p59 hypothetical protein phrog_20931 unknown function unknown function 1 44916 45128
YP_003344969.1 NC_013600_p34 hypothetical protein phrog_9291 unknown function unknown function -1 28892 29116
YP_003344983.1 NC_013600_p48 phage replicative helicase/primease phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism 1 37913 40177
YP_003344970.1 NC_013600_p35 hypothetical protein phrog_5558 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 29154 29327
YP_003344948.1 NC_013600_p13 hypothetical protein phrog_179 tail terminator connector 1 9258 9680
YP_003344952.1 NC_013600_p17 phage tail length tape measure protein phrog_24 tail length tape measure protein tail 1 11598 14240
YP_003344955.1 NC_013600_p20 phage minor tail protein phrog_30 minor tail protein tail 1 15664 16404
YP_003344951.1 NC_013600_p16 hypothetical protein phrog_680 tail length tape measure protein tail 1 10899 11213
YP_003344991.1 NC_013600_p56 lysozyme phrog_7 endolysin lysis 1 42909 43400
YP_003344937.1 NC_013600_p2 phage terminase large subunit phrog_2 terminase large subunit head and packaging 1 627 2012
YP_003344962.1 NC_013600_p27 hypothetical protein phrog_9871 unknown function unknown function -1 24175 24657
YP_003344960.1 NC_013600_p25 phage tail fiber protein phrog_1980 tail fiber protein tail 1 21752 23530
YP_003344990.1 NC_013600_p55 hypothetical protein phrog_2508 holin lysis 1 42677 42922
YP_003344972.1 NC_013600_p37 HNH endonuclease phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism -1 29643 30245
YP_003344981.1 NC_013600_p46 hypothetical protein phrog_3127 unknown function unknown function -1 36741 37349
YP_003344957.1 NC_013600_p22 phage tail fiber tip protein phrog_31 central tail fiber J tail 1 17009 20455
YP_003344946.1 NC_013600_p11 hypothetical protein phrog_161 head closure Hc1 connector 1 8310 8663
YP_003344978.1 NC_013600_p43 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 34822 36252
YP_003344964.1 NC_013600_p29 DNA N-6-adenine-methyltransferase phrog_111 DNA methyltransferase other -1 25433 25918
YP_003344961.1 NC_013600_p26 hypothetical protein phrog_10558 unknown function unknown function -1 23557 24132