| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_013600 |
Definition |
Sodalis phage SO-1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dhillonvirus. |
DB of origin |
REFSEQ |
Length |
45169 |
Host Name |
Sodalis glossinidius |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
54.58 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_003344941.1 | NC_013600_p6 | hypothetical protein | phrog_1267 | Rz-like spanin | lysis | 1 | 4834 | 5064 |
| YP_003344974.1 | NC_013600_p39 | type I self-splicing intron | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 31258 | 32016 |
| YP_003344942.1 | NC_013600_p7 | DNA polymerase III beta subunit | phrog_3007 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 5082 | 5600 |
| YP_003344956.1 | NC_013600_p21 | phage tail assembly protein | phrog_32 | tail assembly protein | tail | 1 | 16395 | 17012 |
| YP_003344985.1 | NC_013600_p50 | hypothetical protein | phrog_9839 | unknown function | unknown function | 1 | 40834 | 41127 |
| YP_003344971.1 | NC_013600_p36 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 29368 | 29646 |
| YP_003344986.1 | NC_013600_p51 | hypothetical protein | phrog_12533 | unknown function | unknown function | 1 | 41137 | 41406 |
| YP_003344938.1 | NC_013600_p3 | phage minor tail protein | phrog_145 | portal protein | head and packaging | 1 | 2023 | 3543 |
| YP_003344945.1 | NC_013600_p10 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 7663 | 8205 |
| YP_003344993.1 | NC_013600_p58 | transcriptional regulator | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43777 | 44919 |
| YP_003344944.1 | NC_013600_p9 | phage major head protein | phrog_247 | major head protein | head and packaging | 1 | 6546 | 7646 |
| YP_003344967.1 | NC_013600_p32 | DNA cytosine-C5-methyltransferase | phrog_757 | DNA methyltransferase | other | -1 | 26771 | 27466 |
| YP_003344979.1 | NC_013600_p44 | hypothetical protein | phrog_9934 | unknown function | unknown function | -1 | 36252 | 36440 |
| YP_003344982.1 | NC_013600_p47 | transposase | phrog_9366 | transposase | integration and excision | 1 | 37573 | 37902 |
| YP_003344940.1 | NC_013600_p5 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | 1 | 4623 | 4931 |
| YP_003344973.1 | NC_013600_p38 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 30312 | 33500 |
| YP_003344954.1 | NC_013600_p19 | phage minor tail protein | phrog_18 | minor tail protein | tail | 1 | 14873 | 15661 |
| YP_003344989.1 | NC_013600_p54 | hypothetical protein | phrog_2359 | holin | lysis | 1 | 42390 | 42680 |
| YP_003344950.1 | NC_013600_p15 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 10537 | 10899 |
| YP_003344943.1 | NC_013600_p8 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 5630 | 6448 |
| YP_003344939.1 | NC_013600_p4 | phage minor head protein | phrog_241 | head morphogenesis | head and packaging | 1 | 3527 | 4630 |
| YP_003344975.1 | NC_013600_p40 | hypothetical protein | phrog_10102 | unknown function | unknown function | -1 | 33497 | 33667 |
| YP_003344976.1 | NC_013600_p41 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 33726 | 34511 |
| YP_003344959.1 | NC_013600_p24 | phage lipoprotein | phrog_4281 | unknown function | unknown function | -1 | 21450 | 21671 |
| YP_003344992.1 | NC_013600_p57 | hypothetical protein | phrog_11068 | unknown function | unknown function | 1 | 43417 | 43584 |
| YP_003344984.1 | NC_013600_p49 | hypothetical protein | phrog_3623 | unknown function | unknown function | 1 | 40658 | 40837 |
| YP_003344958.1 | NC_013600_p23 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 20482 | 21447 |
| YP_003344965.1 | NC_013600_p30 | DNA ligase | phrog_10530 | DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 25905 | 26369 |
| YP_003344953.1 | NC_013600_p18 | phage minor tail protein | phrog_9922 | minor tail protein | tail | 1 | 14277 | 14876 |
| YP_003344988.1 | NC_013600_p53 | hypothetical protein | phrog_2531 | unknown function | unknown function | 1 | 42049 | 42336 |
| YP_003344947.1 | NC_013600_p12 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 8665 | 9258 |
| YP_003344936.1 | NC_013600_p1 | phage terminase small subunit | phrog_3064 | terminase | head and packaging | 1 | 55 | 627 |
| YP_003344966.1 | NC_013600_p31 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26451 | 26774 |
| YP_003344963.1 | NC_013600_p28 | hypothetical protein | phrog_415 | polynucleotide kinase | other | -1 | 24759 | 25229 |
| YP_003344968.1 | NC_013600_p33 | DEXX-box helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 27463 | 28887 |
| YP_003344987.1 | NC_013600_p52 | hypothetical protein | phrog_10243 | unknown function | unknown function | 1 | 41403 | 41927 |
| YP_003344980.1 | NC_013600_p45 | hypothetical protein | phrog_4965 | unknown function | unknown function | -1 | 36441 | 36692 |
| YP_003344949.1 | NC_013600_p14 | phage major tail protein | phrog_584 | major tail protein | tail | 1 | 9742 | 10467 |
| YP_003344977.1 | NC_013600_p42 | hypothetical protein | phrog_11211 | unknown function | unknown function | -1 | 34587 | 34829 |
| YP_003344994.1 | NC_013600_p59 | hypothetical protein | phrog_20931 | unknown function | unknown function | 1 | 44916 | 45128 |
| YP_003344969.1 | NC_013600_p34 | hypothetical protein | phrog_9291 | unknown function | unknown function | -1 | 28892 | 29116 |
| YP_003344983.1 | NC_013600_p48 | phage replicative helicase/primease | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | 1 | 37913 | 40177 |
| YP_003344970.1 | NC_013600_p35 | hypothetical protein | phrog_5558 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 29154 | 29327 |
| YP_003344948.1 | NC_013600_p13 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 9258 | 9680 |
| YP_003344952.1 | NC_013600_p17 | phage tail length tape measure protein | phrog_24 | tail length tape measure protein | tail | 1 | 11598 | 14240 |
| YP_003344955.1 | NC_013600_p20 | phage minor tail protein | phrog_30 | minor tail protein | tail | 1 | 15664 | 16404 |
| YP_003344951.1 | NC_013600_p16 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | 1 | 10899 | 11213 |
| YP_003344991.1 | NC_013600_p56 | lysozyme | phrog_7 | endolysin | lysis | 1 | 42909 | 43400 |
| YP_003344937.1 | NC_013600_p2 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 627 | 2012 |
| YP_003344962.1 | NC_013600_p27 | hypothetical protein | phrog_9871 | unknown function | unknown function | -1 | 24175 | 24657 |
| YP_003344960.1 | NC_013600_p25 | phage tail fiber protein | phrog_1980 | tail fiber protein | tail | 1 | 21752 | 23530 |
| YP_003344990.1 | NC_013600_p55 | hypothetical protein | phrog_2508 | holin | lysis | 1 | 42677 | 42922 |
| YP_003344972.1 | NC_013600_p37 | HNH endonuclease | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 29643 | 30245 |
| YP_003344981.1 | NC_013600_p46 | hypothetical protein | phrog_3127 | unknown function | unknown function | -1 | 36741 | 37349 |
| YP_003344957.1 | NC_013600_p22 | phage tail fiber tip protein | phrog_31 | central tail fiber J | tail | 1 | 17009 | 20455 |
| YP_003344946.1 | NC_013600_p11 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 8310 | 8663 |
| YP_003344978.1 | NC_013600_p43 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 34822 | 36252 |
| YP_003344964.1 | NC_013600_p29 | DNA N-6-adenine-methyltransferase | phrog_111 | DNA methyltransferase | other | -1 | 25433 | 25918 |
| YP_003344961.1 | NC_013600_p26 | hypothetical protein | phrog_10558 | unknown function | unknown function | -1 | 23557 | 24132 |