Genomic map of Pseudomonas phage phi-2 (NC_013638)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_013638
Definition
Pseudomonas phage phi-2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Tunggulviirus; Pseudomonas virus f2.
DB of origin
REFSEQ
Length
43144
Host Name
Pseudomonas fluorescens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
43
%GC
58.91
Number of singletons
10
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_003345477.1 NC_013638_p12 predicted phage DNA Primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 7353 8192
YP_003345479.1 NC_013638_p14 hypothetical protein singleton unknown function unknown function 1 9423 9854
YP_003345499.1 NC_013638_p34 predicted phage lysozyme phrog_2083 internal virion lysozyme motif head and packaging 1 29954 32536
YP_003345492.1 NC_013638_p27 predicted phage virion structural protein phrog_3112 virion structural protein head and packaging 1 22362 22745
YP_003345475.1 NC_013638_p10 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 6295 6891
YP_003345485.1 NC_013638_p20 predicted phage DNA Exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15451 16413
YP_003345469.1 NC_013638_p4 hypothetical protein singleton unknown function unknown function 1 2370 2807
YP_003345483.1 NC_013638_p18 hypothetical protein phrog_13804 unknown function unknown function 1 14237 14485
YP_003345484.1 NC_013638_p19 hypothetical protein phrog_862 unknown function unknown function 1 14476 15450
YP_003345478.1 NC_013638_p13 predicted phage DNA Helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8221 9426
YP_003345482.1 NC_013638_p17 predicted phage DNA Polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 11698 14067
YP_003345508.1 NC_013638_p43 hypothetical phage repetitive protein singleton unknown function unknown function 1 42242 42481
YP_003345489.1 NC_013638_p24 predicted phage RNA Polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 18825 21269
YP_003345472.1 NC_013638_p7 hypothetical phage membrane protein singleton unknown function unknown function 1 3858 4730
YP_003345506.1 NC_013638_p41 hypothetical phage membrane protein phrog_214 Rz-like spanin lysis 1 40558 40851
YP_003345474.1 NC_013638_p9 hypothetical protein singleton unknown function unknown function 1 5165 6295
YP_003345470.1 NC_013638_p5 hypothetical protein singleton unknown function unknown function 1 2804 3118
YP_003345504.1 NC_013638_p39 predicted phage DNA maturase B phrog_38 terminase large subunit head and packaging 1 38087 39877
YP_003345505.1 NC_013638_p40 predicted phage lysozyme phrog_7 endolysin lysis 1 40076 40576
YP_003345501.1 NC_013638_p36 predicted phage tail fibre protein phrog_13173 tail fiber protein tail 1 35591 37411
YP_003345467.1 NC_013638_p2 hypothetical protein phrog_1448 unknown function unknown function 1 907 1464
YP_003345491.1 NC_013638_p26 predicted phage DNA Endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 21896 22393
YP_003345476.1 NC_013638_p11 hypothetical protein singleton unknown function unknown function 1 6920 7351
YP_003345494.1 NC_013638_p29 predicted phage capsid scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 24295 25248
YP_003345495.1 NC_013638_p30 predicted phage capsid protein phrog_267 major head protein head and packaging 1 25373 26365
YP_003345481.1 NC_013638_p16 hypothetical protein singleton unknown function unknown function 1 11133 11456
YP_003345468.1 NC_013638_p3 hypothetical protein phrog_7806 unknown function unknown function 1 1640 2176
YP_003345471.1 NC_013638_p6 hypothetical protein singleton unknown function unknown function 1 3321 3719
YP_003345487.1 NC_013638_p22 hypothetical protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 16936 17931
YP_003345507.1 NC_013638_p42 hypothetical protein phrog_9732 unknown function unknown function 1 41223 41666
YP_003345503.1 NC_013638_p38 predicted phage DNA maturase A phrog_891 terminase small subunit head and packaging 1 37797 38087
YP_003345498.1 NC_013638_p33 predicted phage virion protein phrog_805 internal virion protein head and packaging 1 29316 29945
YP_003345493.1 NC_013638_p28 predicted phage head-tail connector protein phrog_449 head-tail adaptor connector 1 22742 24298
YP_003345500.1 NC_013638_p35 predicted phage virion protein phrog_342 internal virion protein with endolysin domain head and packaging 1 32547 35591
YP_003345488.1 NC_013638_p23 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 17940 18575
YP_003345502.1 NC_013638_p37 hypothetical protein phrog_188 tail fiber assembly protein tail 1 37408 37794
YP_003345496.1 NC_013638_p31 predicted phage tail tubular protein A phrog_446 tail protein tail 1 26424 26978
YP_003345497.1 NC_013638_p32 predicted phage tail tubular protein B phrog_457 tail protein tail 1 26980 29313
YP_003345466.1 NC_013638_p1 hypothetical protein phrog_24696 unknown function unknown function 1 483 869
YP_003345480.1 NC_013638_p15 predicted phage DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 9864 10865
YP_003345486.1 NC_013638_p21 predicted phage DNA Endonuclease VII phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 16403 16939
YP_003345473.1 NC_013638_p8 hypothetical protein singleton unknown function unknown function 1 4796 5161
YP_003345490.1 NC_013638_p25 hypothetical protein phrog_3986 unknown function unknown function 1 21538 21942