| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_013645 |
Definition |
Streptococcus phage Abc2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Moineauvirus. |
DB of origin |
REFSEQ |
Length |
34882 |
Host Name |
Streptococcus thermophilus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
38.98 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_003347457.1 | NC_013645_p48 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34270 | 34788 |
| YP_003347418.1 | NC_013645_p9 | tail component protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6348 | 6770 |
| YP_003347413.1 | NC_013645_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2639 | 3799 |
| YP_003347453.1 | NC_013645_p44 | hypothetical protein | phrog_884 | unknown function | unknown function | 1 | 32385 | 32687 |
| YP_003347443.1 | NC_013645_p34 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 28181 | 29152 |
| YP_003347439.1 | NC_013645_p30 | hypothetical protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 25514 | 26245 |
| YP_003347440.1 | NC_013645_p31 | DnaC-like protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 26433 | 27215 |
| YP_003347432.1 | NC_013645_p23 | cro-like protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 22417 | 22620 |
| YP_003347423.1 | NC_013645_p14 | tail component protein | phrog_4070 | tail length tape measure protein | tail | 1 | 10779 | 13397 |
| YP_003347429.1 | NC_013645_p20 | hypothetical protein | phrog_1296 | holin | lysis | 1 | 20497 | 20820 |
| YP_003347430.1 | NC_013645_p21 | holin | phrog_297 | holin | lysis | 1 | 20828 | 21070 |
| YP_003347437.1 | NC_013645_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24804 | 24974 |
| YP_003347411.1 | NC_013645_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 567 | 2438 |
| YP_003347454.1 | NC_013645_p45 | hypothetical protein | phrog_1814 | unknown function | unknown function | 1 | 32684 | 33391 |
| YP_003347434.1 | NC_013645_p25 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 23587 | 23790 |
| YP_003347449.1 | NC_013645_p40 | hypothetical protein | phrog_36153 | unknown function | unknown function | 1 | 30662 | 30979 |
| YP_003347455.1 | NC_013645_p46 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 33738 | 34037 |
| YP_003347450.1 | NC_013645_p41 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 31008 | 31391 |
| YP_003347425.1 | NC_013645_p16 | host specificity protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 14932 | 17865 |
| YP_003347435.1 | NC_013645_p26 | phage antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 23845 | 24561 |
| YP_003347444.1 | NC_013645_p35 | single-stranded binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29149 | 29601 |
| YP_003347441.1 | NC_013645_p32 | hypothetical protein | phrog_3159 | unknown function | unknown function | 1 | 27212 | 27394 |
| YP_003347414.1 | NC_013645_p5 | scaffolding protein | phrog_94 | head maturation protease | head and packaging | 1 | 3786 | 4454 |
| YP_003347419.1 | NC_013645_p10 | tail component protein | phrog_1217 | tail protein | tail | 1 | 6775 | 7146 |
| YP_003347410.1 | NC_013645_p1 | terminase small subunit | phrog_361 | terminase small subunit | head and packaging | 1 | 234 | 545 |
| YP_003347438.1 | NC_013645_p29 | hypothetical protein | phrog_1022 | unknown function | unknown function | 1 | 25114 | 25257 |
| YP_003347431.1 | NC_013645_p22 | lysin | phrog_998 | endolysin | lysis | 1 | 21072 | 21917 |
| YP_003347426.1 | NC_013645_p17 | tail protein | phrog_372 | tail protein | tail | 1 | 17866 | 19887 |
| YP_003347412.1 | NC_013645_p3 | head-tail joining protein | phrog_1142 | unknown function | unknown function | 1 | 2442 | 2621 |
| YP_003347447.1 | NC_013645_p38 | hypothetical protein | phrog_803 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 30296 | 30469 |
| YP_003347433.1 | NC_013645_p24 | hypothetical protein | phrog_1733 | unknown function | unknown function | 1 | 22661 | 23488 |
| YP_003347448.1 | NC_013645_p39 | hypothetical protein | phrog_1489 | unknown function | unknown function | 1 | 30507 | 30665 |
| YP_003347446.1 | NC_013645_p37 | hypothetical protein | phrog_1982 | unknown function | unknown function | 1 | 30069 | 30305 |
| YP_003347445.1 | NC_013645_p36 | hypothetical protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 29611 | 30072 |
| YP_003347428.1 | NC_013645_p19 | hypothetical protein | phrog_1567 | unknown function | unknown function | 1 | 20333 | 20479 |
| YP_003347451.1 | NC_013645_p42 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 31403 | 31903 |
| YP_003347442.1 | NC_013645_p33 | Erf protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 27522 | 28178 |
| YP_003347416.1 | NC_013645_p7 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5677 | 5991 |
| YP_003347424.1 | NC_013645_p15 | tail component protein | phrog_202 | distal tail protein Dit | tail | 1 | 13394 | 14953 |
| YP_003347417.1 | NC_013645_p8 | capsid-tail joining protein | phrog_25 | head closure Hc1 | connector | 1 | 5991 | 6341 |
| YP_003347456.1 | NC_013645_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34030 | 34158 |
| YP_003347452.1 | NC_013645_p43 | DNA binding protein | phrog_1994 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31904 | 32410 |
| YP_003347420.1 | NC_013645_p11 | major tail protein | phrog_88 | major tail protein | tail | 1 | 7168 | 7779 |
| YP_003347427.1 | NC_013645_p18 | hypothetical protein | phrog_1060 | unknown function | unknown function | 1 | 19903 | 20313 |
| YP_003347436.1 | NC_013645_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24571 | 24720 |
| YP_003347415.1 | NC_013645_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4469 | 5662 |
| YP_003347421.1 | NC_013645_p12 | tail component protein | phrog_1346 | tail protein | tail | 1 | 7854 | 8207 |
| YP_003347422.1 | NC_013645_p13 | tail component protein | phrog_21157 | minor tail protein | tail | 1 | 8426 | 10816 |