functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
NC_013692 |
Definition |
Pseudomonas phage LIT1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Litunavirus. |
DB of origin |
REFSEQ |
Length |
72544 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
90 |
%GC |
55.01 |
Number of singletons |
1 |
Number of paralogs |
1 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
YP_003358480.1 | NC_013692_p83 | N4 gp67-like protein | phrog_2125 | virion structural protein | head and packaging | -1 | 66434 | 67168 |
YP_003358425.1 | NC_013692_p28 | hypothetical protein | phrog_8374 | unknown function | unknown function | 1 | 11276 | 11794 |
YP_003358441.1 | NC_013692_p44 | hypothetical protein | phrog_7722 | unknown function | unknown function | 1 | 26615 | 26839 |
YP_003358419.1 | NC_013692_p22 | hypothetical protein | phrog_8144 | unknown function | unknown function | 1 | 7419 | 7691 |
YP_003358479.1 | NC_013692_p82 | hypothetical protein | phrog_8880 | unknown function | unknown function | 1 | 66102 | 66401 |
YP_003358428.1 | NC_013692_p31 | hypothetical protein | phrog_5534 | unknown function | unknown function | 1 | 12503 | 13336 |
YP_003358465.1 | NC_013692_p68 | hypothetical protein | phrog_8394 | unknown function | unknown function | 1 | 43758 | 43994 |
YP_003358402.1 | NC_013692_p5 | hypothetical protein | phrog_7875 | unknown function | unknown function | 1 | 1542 | 1790 |
YP_003358434.1 | NC_013692_p37 | hypothetical protein | phrog_7095 | unknown function | unknown function | 1 | 17688 | 18215 |
YP_003358457.1 | NC_013692_p60 | N4 gp43-like protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 37416 | 39584 |
YP_003358474.1 | NC_013692_p77 | N4 gp56-like protein | phrog_1357 | major head protein | head and packaging | -1 | 60626 | 61825 |
YP_003358405.1 | NC_013692_p8 | hypothetical protein | phrog_8477 | unknown function | unknown function | 1 | 2380 | 2583 |
YP_003358408.1 | NC_013692_p11 | hypothetical protein | phrog_8895 | unknown function | unknown function | 1 | 3058 | 3279 |
YP_003358468.1 | NC_013692_p71 | N4 gp50-like protein | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 44537 | 54733 |
YP_003358487.1 | NC_013692_p90 | hypothetical protein | phrog_8657 | unknown function | unknown function | 1 | 71012 | 71647 |
YP_003358412.1 | NC_013692_p15 | N4 gp14-like protein | phrog_2072 | unknown function | unknown function | 1 | 4400 | 4801 |
YP_003358424.1 | NC_013692_p27 | hypothetical protein | phrog_8451 | unknown function | unknown function | 1 | 10695 | 11276 |
YP_003358456.1 | NC_013692_p59 | N4 gp42-like protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 36391 | 37401 |
YP_003358443.1 | NC_013692_p46 | hypothetical protein | phrog_8307 | unknown function | unknown function | 1 | 27290 | 27481 |
YP_003358420.1 | NC_013692_p23 | N4 gp16-like protein | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 7726 | 8967 |
YP_003358447.1 | NC_013692_p50 | hypothetical protein | phrog_2687 | unknown function | unknown function | -1 | 29121 | 29315 |
YP_003358423.1 | NC_013692_p26 | hypothetical protein | phrog_8613 | unknown function | unknown function | 1 | 10141 | 10695 |
YP_003358439.1 | NC_013692_p42 | N4 gp33-like protein | phrog_2979 | RIIA lysis inhibitor | lysis | 1 | 22258 | 24777 |
YP_003358429.1 | NC_013692_p32 | hypothetical protein | phrog_4781 | unknown function | unknown function | 1 | 13333 | 13575 |
YP_003358436.1 | NC_013692_p39 | hypothetical protein | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 20963 | 21481 |
YP_003358463.1 | NC_013692_p66 | hypothetical protein | phrog_7564 | unknown function | unknown function | 1 | 42509 | 42889 |
YP_003358403.1 | NC_013692_p6 | hypothetical protein | phrog_2614 | unknown function | unknown function | 1 | 1794 | 2090 |
YP_003358473.1 | NC_013692_p76 | N4 gp55-like protein | phrog_2130 | unknown function | unknown function | -1 | 59904 | 60569 |
YP_003358452.1 | NC_013692_p55 | hypothetical protein | phrog_4047 | unknown function | unknown function | -1 | 33606 | 33905 |
YP_003358467.1 | NC_013692_p70 | hypothetical protein | phrog_8152 | unknown function | unknown function | 1 | 44318 | 44521 |
YP_003358433.1 | NC_013692_p36 | N4 gp37-like protein | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 16351 | 17688 |
YP_003358440.1 | NC_013692_p43 | N4 gp34-like protein | phrog_2886 | RIIB lysis inhibitor | lysis | 1 | 24789 | 26567 |
YP_003358466.1 | NC_013692_p69 | hypothetical protein | phrog_7891 | unknown function | unknown function | 1 | 43991 | 44308 |
YP_003358435.1 | NC_013692_p38 | N4 gp39-like protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18215 | 20830 |
YP_003358477.1 | NC_013692_p80 | N4 gp59-like protein | phrog_1216 | portal protein | head and packaging | -1 | 63464 | 65644 |
YP_003358461.1 | NC_013692_p64 | N4 gp48-like protein | phrog_3934 | unknown function | unknown function | 1 | 41506 | 41949 |
YP_003358483.1 | NC_013692_p86 | hypothetical protein | singleton | unknown function | unknown function | 1 | 69762 | 70040 |
YP_003358471.1 | NC_013692_p74 | N4 gp53-like protein | phrog_2220 | unknown function | unknown function | -1 | 56740 | 58962 |
YP_003358422.1 | NC_013692_p25 | hypothetical protein | phrog_7111 | unknown function | unknown function | 1 | 9518 | 10144 |
YP_003358470.1 | NC_013692_p73 | N4 gp52-like protein | phrog_2646 | unknown function | unknown function | -1 | 56292 | 56759 |
YP_003358426.1 | NC_013692_p29 | hypothetical protein | phrog_12464 | unknown function | unknown function | 1 | 11842 | 12015 |
YP_003358449.1 | NC_013692_p52 | hypothetical protein | phrog_2712 | tail fiber protein | tail | -1 | 29670 | 30512 |
YP_003358458.1 | NC_013692_p61 | N4 gp44-like protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39633 | 40367 |
YP_003358481.1 | NC_013692_p84 | N4 gp68-like protein | phrog_38 | terminase large subunit | head and packaging | -1 | 67165 | 68817 |
YP_003358409.1 | NC_013692_p12 | hypothetical protein | phrog_8570 | unknown function | unknown function | 1 | 3351 | 3536 |
YP_003358406.1 | NC_013692_p9 | hypothetical protein | phrog_8885 | unknown function | unknown function | 1 | 2613 | 2831 |
YP_003358462.1 | NC_013692_p65 | N4 gp46-like protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 41937 | 42497 |
YP_003358476.1 | NC_013692_p79 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 63056 | 63394 |
YP_003358410.1 | NC_013692_p13 | hypothetical protein | phrog_6271 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 3628 | 3918 |
YP_003358427.1 | NC_013692_p30 | hypothetical protein | phrog_8112 | unknown function | unknown function | 1 | 12259 | 12444 |
YP_003358400.1 | NC_013692_p3 | hypothetical protein | phrog_3968 | unknown function | unknown function | 1 | 1073 | 1315 |
YP_003358418.1 | NC_013692_p21 | hypothetical protein | phrog_14277 | unknown function | unknown function | 1 | 7131 | 7415 |
YP_003358464.1 | NC_013692_p67 | hypothetical protein | phrog_7212 | unknown function | unknown function | 1 | 42947 | 43351 |
YP_003358460.1 | NC_013692_p63 | hypothetical protein | phrog_6026 | unknown function | unknown function | 1 | 41144 | 41509 |
YP_003358415.1 | NC_013692_p18 | hypothetical protein | phrog_8585 | unknown function | unknown function | 1 | 5532 | 5879 |
YP_003358417.1 | NC_013692_p20 | hypothetical protein | phrog_8597 | unknown function | unknown function | 1 | 6836 | 7096 |
YP_003358411.1 | NC_013692_p14 | hypothetical protein | phrog_8775 | unknown function | unknown function | 1 | 4107 | 4400 |
YP_003358407.1 | NC_013692_p10 | hypothetical protein | phrog_8334 | unknown function | unknown function | 1 | 2828 | 3061 |
YP_003358482.1 | NC_013692_p85 | N4 gp69-like protein | phrog_2109 | unknown function | unknown function | -1 | 68817 | 69542 |
YP_003358453.1 | NC_013692_p56 | hypothetical protein | phrog_496 | tail fiber protein | tail | -1 | 33902 | 35191 |
YP_003358414.1 | NC_013692_p17 | hypothetical protein | phrog_335 | phosphatase | other | 1 | 5052 | 5492 |
YP_003358484.1 | NC_013692_p87 | hypothetical protein | phrog_8800 | unknown function | unknown function | 1 | 70040 | 70252 |
YP_003358442.1 | NC_013692_p45 | hypothetical protein | phrog_6854 | holin | lysis | 1 | 26923 | 27240 |
YP_003358459.1 | NC_013692_p62 | N4 gp45-like protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40394 | 41140 |
YP_003358430.1 | NC_013692_p33 | N4 gp24-like protein | phrog_1297 | ATPase | other | 1 | 13607 | 14677 |
YP_003358450.1 | NC_013692_p53 | hypothetical protein | phrog_7697 | tail fiber protein | tail | -1 | 30707 | 32899 |
YP_003358431.1 | NC_013692_p34 | hypothetical protein | phrog_14291 | unknown function | unknown function | 1 | 14688 | 15206 |
YP_003358401.1 | NC_013692_p4 | hypothetical protein | phrog_3968 | unknown function | unknown function | 1 | 1312 | 1542 |
YP_003358451.1 | NC_013692_p54 | hypothetical protein | phrog_3370 | unknown function | unknown function | -1 | 32938 | 33609 |
YP_003358448.1 | NC_013692_p51 | hypothetical protein | phrog_2398 | unknown function | unknown function | -1 | 29332 | 29670 |
YP_003358432.1 | NC_013692_p35 | N4 gp25-like protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15206 | 16432 |
YP_003358437.1 | NC_013692_p40 | hypothetical protein | phrog_8620 | unknown function | unknown function | 1 | 21656 | 22066 |
YP_003358475.1 | NC_013692_p78 | N4 gp57-like protein | phrog_2120 | tail length tape measure protein | tail | -1 | 61860 | 63056 |
YP_003358416.1 | NC_013692_p19 | N4 gp15-like protein | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5891 | 6823 |
YP_003358485.1 | NC_013692_p88 | hypothetical protein | phrog_10651 | unknown function | unknown function | 1 | 70249 | 70509 |
YP_003358404.1 | NC_013692_p7 | hypothetical protein | phrog_8449 | unknown function | unknown function | 1 | 2074 | 2376 |
YP_003358454.1 | NC_013692_p57 | hypothetical protein | phrog_3360 | unknown function | unknown function | 1 | 35584 | 36012 |
YP_003358446.1 | NC_013692_p49 | hypothetical protein | phrog_3108 | unknown function | unknown function | -1 | 28600 | 29124 |
YP_003358445.1 | NC_013692_p48 | hypothetical protein | phrog_312 | Rz-like spanin | lysis | -1 | 28091 | 28603 |
YP_003358444.1 | NC_013692_p47 | hypothetical protein | phrog_8796 | unknown function | unknown function | 1 | 27474 | 28028 |
YP_003358486.1 | NC_013692_p89 | hypothetical protein | phrog_9146 | unknown function | unknown function | 1 | 70500 | 70808 |
YP_003358399.1 | NC_013692_p2 | hypothetical protein | phrog_7624 | unknown function | unknown function | 1 | 863 | 1054 |
YP_003358478.1 | NC_013692_p81 | hypothetical protein | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 65712 | 66098 |
YP_003358469.1 | NC_013692_p72 | hypothetical protein | phrog_6467 | unknown function | unknown function | -1 | 54734 | 56164 |
YP_003358438.1 | NC_013692_p41 | N4 gp22-like protein | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 21898 | 22254 |
YP_003358472.1 | NC_013692_p75 | N4 gp54-like protein | phrog_2050 | virion structural protein | head and packaging | -1 | 59019 | 59900 |
YP_003358398.1 | NC_013692_p1 | hypothetical protein | phrog_6483 | unknown function | unknown function | 1 | 201 | 455 |
YP_003358413.1 | NC_013692_p16 | hypothetical protein | phrog_7756 | unknown function | unknown function | 1 | 4801 | 5052 |
YP_003358421.1 | NC_013692_p24 | hypothetical protein | phrog_6140 | unknown function | unknown function | 1 | 9290 | 9514 |
YP_003358455.1 | NC_013692_p58 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 36009 | 36389 |