Genomic map of Pseudomonas phage LIT1 (NC_013692)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_013692
Definition
Pseudomonas phage LIT1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Litunavirus.
DB of origin
REFSEQ
Length
72544
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
90
%GC
55.01
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_003358480.1 NC_013692_p83 N4 gp67-like protein phrog_2125 virion structural protein head and packaging -1 66434 67168
YP_003358425.1 NC_013692_p28 hypothetical protein phrog_8374 unknown function unknown function 1 11276 11794
YP_003358441.1 NC_013692_p44 hypothetical protein phrog_7722 unknown function unknown function 1 26615 26839
YP_003358419.1 NC_013692_p22 hypothetical protein phrog_8144 unknown function unknown function 1 7419 7691
YP_003358479.1 NC_013692_p82 hypothetical protein phrog_8880 unknown function unknown function 1 66102 66401
YP_003358428.1 NC_013692_p31 hypothetical protein phrog_5534 unknown function unknown function 1 12503 13336
YP_003358465.1 NC_013692_p68 hypothetical protein phrog_8394 unknown function unknown function 1 43758 43994
YP_003358402.1 NC_013692_p5 hypothetical protein phrog_7875 unknown function unknown function 1 1542 1790
YP_003358434.1 NC_013692_p37 hypothetical protein phrog_7095 unknown function unknown function 1 17688 18215
YP_003358457.1 NC_013692_p60 N4 gp43-like protein phrog_2135 DNA primase DNA, RNA and nucleotide metabolism 1 37416 39584
YP_003358474.1 NC_013692_p77 N4 gp56-like protein phrog_1357 major head protein head and packaging -1 60626 61825
YP_003358405.1 NC_013692_p8 hypothetical protein phrog_8477 unknown function unknown function 1 2380 2583
YP_003358408.1 NC_013692_p11 hypothetical protein phrog_8895 unknown function unknown function 1 3058 3279
YP_003358468.1 NC_013692_p71 N4 gp50-like protein phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism -1 44537 54733
YP_003358487.1 NC_013692_p90 hypothetical protein phrog_8657 unknown function unknown function 1 71012 71647
YP_003358412.1 NC_013692_p15 N4 gp14-like protein phrog_2072 unknown function unknown function 1 4400 4801
YP_003358424.1 NC_013692_p27 hypothetical protein phrog_8451 unknown function unknown function 1 10695 11276
YP_003358456.1 NC_013692_p59 N4 gp42-like protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism 1 36391 37401
YP_003358443.1 NC_013692_p46 hypothetical protein phrog_8307 unknown function unknown function 1 27290 27481
YP_003358420.1 NC_013692_p23 N4 gp16-like protein phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 7726 8967
YP_003358447.1 NC_013692_p50 hypothetical protein phrog_2687 unknown function unknown function -1 29121 29315
YP_003358423.1 NC_013692_p26 hypothetical protein phrog_8613 unknown function unknown function 1 10141 10695
YP_003358439.1 NC_013692_p42 N4 gp33-like protein phrog_2979 RIIA lysis inhibitor lysis 1 22258 24777
YP_003358429.1 NC_013692_p32 hypothetical protein phrog_4781 unknown function unknown function 1 13333 13575
YP_003358436.1 NC_013692_p39 hypothetical protein phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 20963 21481
YP_003358463.1 NC_013692_p66 hypothetical protein phrog_7564 unknown function unknown function 1 42509 42889
YP_003358403.1 NC_013692_p6 hypothetical protein phrog_2614 unknown function unknown function 1 1794 2090
YP_003358473.1 NC_013692_p76 N4 gp55-like protein phrog_2130 unknown function unknown function -1 59904 60569
YP_003358452.1 NC_013692_p55 hypothetical protein phrog_4047 unknown function unknown function -1 33606 33905
YP_003358467.1 NC_013692_p70 hypothetical protein phrog_8152 unknown function unknown function 1 44318 44521
YP_003358433.1 NC_013692_p36 N4 gp37-like protein phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 16351 17688
YP_003358440.1 NC_013692_p43 N4 gp34-like protein phrog_2886 RIIB lysis inhibitor lysis 1 24789 26567
YP_003358466.1 NC_013692_p69 hypothetical protein phrog_7891 unknown function unknown function 1 43991 44308
YP_003358435.1 NC_013692_p38 N4 gp39-like protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 18215 20830
YP_003358477.1 NC_013692_p80 N4 gp59-like protein phrog_1216 portal protein head and packaging -1 63464 65644
YP_003358461.1 NC_013692_p64 N4 gp48-like protein phrog_3934 unknown function unknown function 1 41506 41949
YP_003358483.1 NC_013692_p86 hypothetical protein singleton unknown function unknown function 1 69762 70040
YP_003358471.1 NC_013692_p74 N4 gp53-like protein phrog_2220 unknown function unknown function -1 56740 58962
YP_003358422.1 NC_013692_p25 hypothetical protein phrog_7111 unknown function unknown function 1 9518 10144
YP_003358470.1 NC_013692_p73 N4 gp52-like protein phrog_2646 unknown function unknown function -1 56292 56759
YP_003358426.1 NC_013692_p29 hypothetical protein phrog_12464 unknown function unknown function 1 11842 12015
YP_003358449.1 NC_013692_p52 hypothetical protein phrog_2712 tail fiber protein tail -1 29670 30512
YP_003358458.1 NC_013692_p61 N4 gp44-like protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 39633 40367
YP_003358481.1 NC_013692_p84 N4 gp68-like protein phrog_38 terminase large subunit head and packaging -1 67165 68817
YP_003358409.1 NC_013692_p12 hypothetical protein phrog_8570 unknown function unknown function 1 3351 3536
YP_003358406.1 NC_013692_p9 hypothetical protein phrog_8885 unknown function unknown function 1 2613 2831
YP_003358462.1 NC_013692_p65 N4 gp46-like protein phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 41937 42497
YP_003358476.1 NC_013692_p79 hypothetical protein phrog_2346 unknown function unknown function -1 63056 63394
YP_003358410.1 NC_013692_p13 hypothetical protein phrog_6271 toxin moron, auxiliary metabolic gene and host takeover 1 3628 3918
YP_003358427.1 NC_013692_p30 hypothetical protein phrog_8112 unknown function unknown function 1 12259 12444
YP_003358400.1 NC_013692_p3 hypothetical protein phrog_3968 unknown function unknown function 1 1073 1315
YP_003358418.1 NC_013692_p21 hypothetical protein phrog_14277 unknown function unknown function 1 7131 7415
YP_003358464.1 NC_013692_p67 hypothetical protein phrog_7212 unknown function unknown function 1 42947 43351
YP_003358460.1 NC_013692_p63 hypothetical protein phrog_6026 unknown function unknown function 1 41144 41509
YP_003358415.1 NC_013692_p18 hypothetical protein phrog_8585 unknown function unknown function 1 5532 5879
YP_003358417.1 NC_013692_p20 hypothetical protein phrog_8597 unknown function unknown function 1 6836 7096
YP_003358411.1 NC_013692_p14 hypothetical protein phrog_8775 unknown function unknown function 1 4107 4400
YP_003358407.1 NC_013692_p10 hypothetical protein phrog_8334 unknown function unknown function 1 2828 3061
YP_003358482.1 NC_013692_p85 N4 gp69-like protein phrog_2109 unknown function unknown function -1 68817 69542
YP_003358453.1 NC_013692_p56 hypothetical protein phrog_496 tail fiber protein tail -1 33902 35191
YP_003358414.1 NC_013692_p17 hypothetical protein phrog_335 phosphatase other 1 5052 5492
YP_003358484.1 NC_013692_p87 hypothetical protein phrog_8800 unknown function unknown function 1 70040 70252
YP_003358442.1 NC_013692_p45 hypothetical protein phrog_6854 holin lysis 1 26923 27240
YP_003358459.1 NC_013692_p62 N4 gp45-like protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 40394 41140
YP_003358430.1 NC_013692_p33 N4 gp24-like protein phrog_1297 ATPase other 1 13607 14677
YP_003358450.1 NC_013692_p53 hypothetical protein phrog_7697 tail fiber protein tail -1 30707 32899
YP_003358431.1 NC_013692_p34 hypothetical protein phrog_14291 unknown function unknown function 1 14688 15206
YP_003358401.1 NC_013692_p4 hypothetical protein phrog_3968 unknown function unknown function 1 1312 1542
YP_003358451.1 NC_013692_p54 hypothetical protein phrog_3370 unknown function unknown function -1 32938 33609
YP_003358448.1 NC_013692_p51 hypothetical protein phrog_2398 unknown function unknown function -1 29332 29670
YP_003358432.1 NC_013692_p35 N4 gp25-like protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 15206 16432
YP_003358437.1 NC_013692_p40 hypothetical protein phrog_8620 unknown function unknown function 1 21656 22066
YP_003358475.1 NC_013692_p78 N4 gp57-like protein phrog_2120 tail length tape measure protein tail -1 61860 63056
YP_003358416.1 NC_013692_p19 N4 gp15-like protein phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 5891 6823
YP_003358485.1 NC_013692_p88 hypothetical protein phrog_10651 unknown function unknown function 1 70249 70509
YP_003358404.1 NC_013692_p7 hypothetical protein phrog_8449 unknown function unknown function 1 2074 2376
YP_003358454.1 NC_013692_p57 hypothetical protein phrog_3360 unknown function unknown function 1 35584 36012
YP_003358446.1 NC_013692_p49 hypothetical protein phrog_3108 unknown function unknown function -1 28600 29124
YP_003358445.1 NC_013692_p48 hypothetical protein phrog_312 Rz-like spanin lysis -1 28091 28603
YP_003358444.1 NC_013692_p47 hypothetical protein phrog_8796 unknown function unknown function 1 27474 28028
YP_003358486.1 NC_013692_p89 hypothetical protein phrog_9146 unknown function unknown function 1 70500 70808
YP_003358399.1 NC_013692_p2 hypothetical protein phrog_7624 unknown function unknown function 1 863 1054
YP_003358478.1 NC_013692_p81 hypothetical protein phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 65712 66098
YP_003358469.1 NC_013692_p72 hypothetical protein phrog_6467 unknown function unknown function -1 54734 56164
YP_003358438.1 NC_013692_p41 N4 gp22-like protein phrog_1872 endonuclease DNA, RNA and nucleotide metabolism 1 21898 22254
YP_003358472.1 NC_013692_p75 N4 gp54-like protein phrog_2050 virion structural protein head and packaging -1 59019 59900
YP_003358398.1 NC_013692_p1 hypothetical protein phrog_6483 unknown function unknown function 1 201 455
YP_003358413.1 NC_013692_p16 hypothetical protein phrog_7756 unknown function unknown function 1 4801 5052
YP_003358421.1 NC_013692_p24 hypothetical protein phrog_6140 unknown function unknown function 1 9290 9514
YP_003358455.1 NC_013692_p58 hypothetical protein phrog_2452 unknown function unknown function 1 36009 36389