| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_013936 |
Definition |
Mycobacterium phage Ardmore, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
52141 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
61.49 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_003495225.1 | NC_013936_p83 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 48753 | 48914 |
| YP_003495215.1 | NC_013936_p73 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 45631 | 45786 |
| YP_003495171.1 | NC_013936_p29 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 27516 | 28514 |
| YP_003495163.1 | NC_013936_p21 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23406 | 23660 |
| YP_003495228.1 | NC_013936_p86 | hypothetical protein | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 50878 | 51672 |
| YP_003495229.1 | NC_013936_p87 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 51672 | 51998 |
| YP_003495192.1 | NC_013936_p50 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 37976 | 38476 |
| YP_003495157.1 | NC_013936_p15 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 14856 | 16565 |
| YP_003495222.1 | NC_013936_p80 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 47914 | 48111 |
| YP_003495180.1 | NC_013936_p38 | hypothetical protein | phrog_2104 | unknown function | unknown function | 1 | 33409 | 33768 |
| YP_003495184.1 | NC_013936_p42 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 35029 | 35220 |
| YP_003495216.1 | NC_013936_p74 | hypothetical protein | phrog_5186 | unknown function | unknown function | 1 | 45783 | 45956 |
| YP_003495193.1 | NC_013936_p51 | hypothetical protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 38473 | 38838 |
| YP_003495167.1 | NC_013936_p25 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25457 | 25741 |
| YP_003495201.1 | NC_013936_p59 | hypothetical protein | phrog_3926 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 41615 | 41989 |
| YP_003495152.1 | NC_013936_p10 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7097 | 7504 |
| YP_003495146.1 | NC_013936_p4 | hypothetical protein | phrog_1522 | head maturation protease | head and packaging | 1 | 3612 | 4367 |
| YP_003495204.1 | NC_013936_p62 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 42651 | 42845 |
| YP_003495223.1 | NC_013936_p81 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 48108 | 48521 |
| YP_003495177.1 | NC_013936_p35 | similar to integrase | phrog_1 | integrase | integration and excision | 1 | 30890 | 32008 |
| YP_003495198.1 | NC_013936_p56 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40049 | 40405 |
| YP_003495221.1 | NC_013936_p79 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 47531 | 47698 |
| YP_003495217.1 | NC_013936_p75 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 46009 | 46302 |
| YP_003495186.1 | NC_013936_p44 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 35444 | 36049 |
| YP_003495169.1 | NC_013936_p27 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26093 | 26365 |
| YP_003495160.1 | NC_013936_p18 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19981 | 21861 |
| YP_003495195.1 | NC_013936_p53 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 38990 | 39220 |
| YP_003495164.1 | NC_013936_p22 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23674 | 24312 |
| YP_003495199.1 | NC_013936_p57 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 40412 | 40564 |
| YP_003495189.1 | NC_013936_p47 | hypothetical protein | phrog_7605 | unknown function | unknown function | 1 | 37051 | 37239 |
| YP_003495179.1 | NC_013936_p37 | hypothetical protein | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 32799 | 33212 |
| YP_003495209.1 | NC_013936_p67 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 43961 | 44149 |
| YP_003495219.1 | NC_013936_p77 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 46559 | 47200 |
| YP_003495170.1 | NC_013936_p28 | hypothetical protein | phrog_700 | endolysin | lysis | 1 | 26362 | 27516 |
| YP_003495162.1 | NC_013936_p20 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23042 | 23383 |
| YP_003495173.1 | NC_013936_p31 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28754 | 29128 |
| YP_003495197.1 | NC_013936_p55 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39474 | 40052 |
| YP_003495188.1 | NC_013936_p46 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 36773 | 37054 |
| YP_003495185.1 | NC_013936_p43 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 35217 | 35447 |
| YP_003495178.1 | NC_013936_p36 | similar to Ms6 pin protein | phrog_1948 | unknown function | unknown function | -1 | 32079 | 32606 |
| YP_003495203.1 | NC_013936_p61 | hypothetical protein | phrog_7196 | unknown function | unknown function | 1 | 42463 | 42654 |
| YP_003495154.1 | NC_013936_p12 | hypothetical protein | phrog_978 | tail assembly chaperone | tail | 1 | 8577 | 9513 |
| YP_003495144.1 | NC_013936_p2 | similar to terminase protein | phrog_9 | terminase large subunit | head and packaging | 1 | 587 | 2224 |
| YP_003495202.1 | NC_013936_p60 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 42203 | 42466 |
| YP_003495158.1 | NC_013936_p16 | hypothetical protein | phrog_732 | minor tail protein | tail | 1 | 16602 | 17450 |
| YP_003495153.1 | NC_013936_p11 | similar to minor tail protein | phrog_476 | major tail protein | tail | 1 | 7631 | 8440 |
| YP_003495143.1 | NC_013936_p1 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_003495187.1 | NC_013936_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36084 | 36734 |
| YP_003495213.1 | NC_013936_p71 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 45192 | 45473 |
| YP_003495156.1 | NC_013936_p14 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 13060 | 14769 |
| YP_003495150.1 | NC_013936_p8 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6446 | 6778 |
| YP_003495210.1 | NC_013936_p68 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 44219 | 44590 |
| YP_003495212.1 | NC_013936_p70 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 44747 | 45160 |
| YP_003495220.1 | NC_013936_p78 | hypothetical protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 47310 | 47534 |
| YP_003495207.1 | NC_013936_p65 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 43412 | 43687 |
| YP_003495211.1 | NC_013936_p69 | hypothetical protein | phrog_7842 | unknown function | unknown function | 1 | 44577 | 44750 |
| YP_003495196.1 | NC_013936_p54 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 39208 | 39477 |
| YP_003495205.1 | NC_013936_p63 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 42842 | 43237 |
| YP_003495174.1 | NC_013936_p32 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29153 | 29386 |
| YP_003495161.1 | NC_013936_p19 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21858 | 23024 |
| YP_003495175.1 | NC_013936_p33 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29373 | 30194 |
| YP_003495166.1 | NC_013936_p24 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25123 | 25473 |
| YP_003495145.1 | NC_013936_p3 | similar to portal protein | phrog_104 | portal protein | head and packaging | 1 | 2255 | 3625 |
| YP_003495151.1 | NC_013936_p9 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6781 | 7110 |
| YP_003495176.1 | NC_013936_p34 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30281 | 30496 |
| YP_003495165.1 | NC_013936_p23 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24249 | 25115 |
| YP_003495155.1 | NC_013936_p13 | tape measure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9532 | 13059 |
| YP_003495147.1 | NC_013936_p5 | hypothetical protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4393 | 5043 |
| YP_003495206.1 | NC_013936_p64 | hypothetical protein | phrog_2591 | unknown function | unknown function | 1 | 43230 | 43415 |
| YP_003495149.1 | NC_013936_p7 | hypothetical protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5883 | 6449 |
| YP_003495208.1 | NC_013936_p66 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 43684 | 43968 |
| YP_003495194.1 | NC_013936_p52 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 38838 | 38993 |
| YP_003495148.1 | NC_013936_p6 | similar to capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5062 | 5883 |
| YP_003495191.1 | NC_013936_p49 | WhiB transcription factor | phrog_1333 | unknown function | unknown function | 1 | 37578 | 37979 |
| YP_003495172.1 | NC_013936_p30 | similar to holin protein | phrog_443 | holin | lysis | 1 | 28524 | 28757 |
| YP_003495182.1 | NC_013936_p40 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 34224 | 34484 |
| YP_003495200.1 | NC_013936_p58 | hypothetical protein | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41061 | 41615 |
| YP_003495181.1 | NC_013936_p39 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 33920 | 34135 |
| YP_003495227.1 | NC_013936_p85 | hypothetical protein | phrog_3297 | kinase | other | 1 | 50385 | 50843 |
| YP_003495183.1 | NC_013936_p41 | hypothetical protein | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34484 | 35032 |
| YP_003495190.1 | NC_013936_p48 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 37243 | 37578 |
| YP_003495218.1 | NC_013936_p76 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 46299 | 46562 |
| YP_003495226.1 | NC_013936_p84 | hypothetical protein | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 48931 | 50367 |
| YP_003495168.1 | NC_013936_p26 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25748 | 25894 |
| YP_003495159.1 | NC_013936_p17 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 17447 | 19984 |
| YP_003495214.1 | NC_013936_p72 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 45470 | 45649 |
| YP_003495224.1 | NC_013936_p82 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 48518 | 48760 |