Genomic map of Mycobacterium virus Ardmore (NC_013936)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_013936
Definition
Mycobacterium phage Ardmore, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus.
DB of origin
REFSEQ
Length
52141
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
87
%GC
61.49
Number of singletons
1
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_003495225.1 NC_013936_p83 hypothetical protein phrog_2057 unknown function unknown function 1 48753 48914
YP_003495215.1 NC_013936_p73 hypothetical protein phrog_1545 unknown function unknown function 1 45631 45786
YP_003495171.1 NC_013936_p29 hypothetical protein phrog_102 endolysin lysis 1 27516 28514
YP_003495163.1 NC_013936_p21 hypothetical protein phrog_2005 minor tail protein tail 1 23406 23660
YP_003495228.1 NC_013936_p86 hypothetical protein phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 50878 51672
YP_003495229.1 NC_013936_p87 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 51672 51998
YP_003495192.1 NC_013936_p50 hypothetical protein phrog_2096 unknown function unknown function 1 37976 38476
YP_003495157.1 NC_013936_p15 hypothetical protein phrog_110 minor tail protein tail 1 14856 16565
YP_003495222.1 NC_013936_p80 hypothetical protein phrog_1694 unknown function unknown function 1 47914 48111
YP_003495180.1 NC_013936_p38 hypothetical protein phrog_2104 unknown function unknown function 1 33409 33768
YP_003495184.1 NC_013936_p42 hypothetical protein phrog_1816 unknown function unknown function 1 35029 35220
YP_003495216.1 NC_013936_p74 hypothetical protein phrog_5186 unknown function unknown function 1 45783 45956
YP_003495193.1 NC_013936_p51 hypothetical protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 38473 38838
YP_003495167.1 NC_013936_p25 hypothetical protein phrog_411 unknown function unknown function 1 25457 25741
YP_003495201.1 NC_013936_p59 hypothetical protein phrog_3926 replication initiation protein DNA, RNA and nucleotide metabolism 1 41615 41989
YP_003495152.1 NC_013936_p10 hypothetical protein phrog_813 head-tail adaptor connector 1 7097 7504
YP_003495146.1 NC_013936_p4 hypothetical protein phrog_1522 head maturation protease head and packaging 1 3612 4367
YP_003495204.1 NC_013936_p62 hypothetical protein phrog_1943 unknown function unknown function 1 42651 42845
YP_003495223.1 NC_013936_p81 hypothetical protein phrog_1186 unknown function unknown function 1 48108 48521
YP_003495177.1 NC_013936_p35 similar to integrase phrog_1 integrase integration and excision 1 30890 32008
YP_003495198.1 NC_013936_p56 hypothetical protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 40049 40405
YP_003495221.1 NC_013936_p79 hypothetical protein phrog_1869 unknown function unknown function 1 47531 47698
YP_003495217.1 NC_013936_p75 hypothetical protein phrog_2278 unknown function unknown function 1 46009 46302
YP_003495186.1 NC_013936_p44 hypothetical protein phrog_1797 unknown function unknown function 1 35444 36049
YP_003495169.1 NC_013936_p27 hypothetical protein phrog_747 unknown function unknown function 1 26093 26365
YP_003495160.1 NC_013936_p18 hypothetical protein phrog_382 minor tail protein with lysin activity tail 1 19981 21861
YP_003495195.1 NC_013936_p53 hypothetical protein phrog_1834 unknown function unknown function 1 38990 39220
YP_003495164.1 NC_013936_p22 hypothetical protein phrog_2012 minor tail protein tail 1 23674 24312
YP_003495199.1 NC_013936_p57 hypothetical protein phrog_1311 unknown function unknown function 1 40412 40564
YP_003495189.1 NC_013936_p47 hypothetical protein phrog_7605 unknown function unknown function 1 37051 37239
YP_003495179.1 NC_013936_p37 hypothetical protein phrog_3949 transcriptional repressor transcription regulation -1 32799 33212
YP_003495209.1 NC_013936_p67 hypothetical protein phrog_722 unknown function unknown function 1 43961 44149
YP_003495219.1 NC_013936_p77 hypothetical protein phrog_1467 unknown function unknown function 1 46559 47200
YP_003495170.1 NC_013936_p28 hypothetical protein phrog_700 endolysin lysis 1 26362 27516
YP_003495162.1 NC_013936_p20 hypothetical protein phrog_240 head protein head and packaging 1 23042 23383
YP_003495173.1 NC_013936_p31 hypothetical protein phrog_404 minor tail protein tail 1 28754 29128
YP_003495197.1 NC_013936_p55 hypothetical protein phrog_3290 single strand annealing protein DNA, RNA and nucleotide metabolism 1 39474 40052
YP_003495188.1 NC_013936_p46 hypothetical protein phrog_1849 unknown function unknown function 1 36773 37054
YP_003495185.1 NC_013936_p43 hypothetical protein phrog_780 unknown function unknown function 1 35217 35447
YP_003495178.1 NC_013936_p36 similar to Ms6 pin protein phrog_1948 unknown function unknown function -1 32079 32606
YP_003495203.1 NC_013936_p61 hypothetical protein phrog_7196 unknown function unknown function 1 42463 42654
YP_003495154.1 NC_013936_p12 hypothetical protein phrog_978 tail assembly chaperone tail 1 8577 9513
YP_003495144.1 NC_013936_p2 similar to terminase protein phrog_9 terminase large subunit head and packaging 1 587 2224
YP_003495202.1 NC_013936_p60 hypothetical protein phrog_2080 unknown function unknown function 1 42203 42466
YP_003495158.1 NC_013936_p16 hypothetical protein phrog_732 minor tail protein tail 1 16602 17450
YP_003495153.1 NC_013936_p11 similar to minor tail protein phrog_476 major tail protein tail 1 7631 8440
YP_003495143.1 NC_013936_p1 hypothetical protein phrog_226 minor tail protein tail 1 109 564
YP_003495187.1 NC_013936_p45 hypothetical protein singleton unknown function unknown function 1 36084 36734
YP_003495213.1 NC_013936_p71 hypothetical protein phrog_1901 unknown function unknown function 1 45192 45473
YP_003495156.1 NC_013936_p14 hypothetical protein phrog_106 minor tail protein tail 1 13060 14769
YP_003495150.1 NC_013936_p8 hypothetical protein phrog_763 head-tail adaptor connector 1 6446 6778
YP_003495210.1 NC_013936_p68 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 44219 44590
YP_003495212.1 NC_013936_p70 hypothetical protein phrog_647 unknown function unknown function 1 44747 45160
YP_003495220.1 NC_013936_p78 hypothetical protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 47310 47534
YP_003495207.1 NC_013936_p65 hypothetical protein phrog_722 unknown function unknown function 1 43412 43687
YP_003495211.1 NC_013936_p69 hypothetical protein phrog_7842 unknown function unknown function 1 44577 44750
YP_003495196.1 NC_013936_p54 hypothetical protein phrog_2632 unknown function unknown function 1 39208 39477
YP_003495205.1 NC_013936_p63 hypothetical protein phrog_1546 unknown function unknown function 1 42842 43237
YP_003495174.1 NC_013936_p32 hypothetical protein phrog_2004 unknown function unknown function 1 29153 29386
YP_003495161.1 NC_013936_p19 hypothetical protein phrog_2106 minor tail protein tail 1 21858 23024
YP_003495175.1 NC_013936_p33 hypothetical protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29373 30194
YP_003495166.1 NC_013936_p24 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25123 25473
YP_003495145.1 NC_013936_p3 similar to portal protein phrog_104 portal protein head and packaging 1 2255 3625
YP_003495151.1 NC_013936_p9 hypothetical protein phrog_1929 head-tail connector protein connector 1 6781 7110
YP_003495176.1 NC_013936_p34 hypothetical protein phrog_1791 unknown function unknown function 1 30281 30496
YP_003495165.1 NC_013936_p23 hypothetical protein phrog_754 minor tail protein tail 1 24249 25115
YP_003495155.1 NC_013936_p13 tape measure protein phrog_1942 tail length tape measure protein tail 1 9532 13059
YP_003495147.1 NC_013936_p5 hypothetical protein phrog_2592 head scaffolding protein head and packaging 1 4393 5043
YP_003495206.1 NC_013936_p64 hypothetical protein phrog_2591 unknown function unknown function 1 43230 43415
YP_003495149.1 NC_013936_p7 hypothetical protein phrog_2377 head-tail adaptor Ad1 connector 1 5883 6449
YP_003495208.1 NC_013936_p66 hypothetical protein phrog_647 unknown function unknown function 1 43684 43968
YP_003495194.1 NC_013936_p52 hypothetical protein phrog_2078 unknown function unknown function 1 38838 38993
YP_003495148.1 NC_013936_p6 similar to capsid protein phrog_267 major head protein head and packaging 1 5062 5883
YP_003495191.1 NC_013936_p49 WhiB transcription factor phrog_1333 unknown function unknown function 1 37578 37979
YP_003495172.1 NC_013936_p30 similar to holin protein phrog_443 holin lysis 1 28524 28757
YP_003495182.1 NC_013936_p40 hypothetical protein phrog_1840 excisionase integration and excision 1 34224 34484
YP_003495200.1 NC_013936_p58 hypothetical protein phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 41061 41615
YP_003495181.1 NC_013936_p39 hypothetical protein phrog_2025 unknown function unknown function 1 33920 34135
YP_003495227.1 NC_013936_p85 hypothetical protein phrog_3297 kinase other 1 50385 50843
YP_003495183.1 NC_013936_p41 hypothetical protein phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 34484 35032
YP_003495190.1 NC_013936_p48 hypothetical protein phrog_658 unknown function unknown function 1 37243 37578
YP_003495218.1 NC_013936_p76 hypothetical protein phrog_2247 unknown function unknown function 1 46299 46562
YP_003495226.1 NC_013936_p84 hypothetical protein phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 48931 50367
YP_003495168.1 NC_013936_p26 hypothetical protein phrog_932 unknown function unknown function 1 25748 25894
YP_003495159.1 NC_013936_p17 hypothetical protein phrog_346 minor tail protein tail 1 17447 19984
YP_003495214.1 NC_013936_p72 hypothetical protein phrog_1091 unknown function unknown function 1 45470 45649
YP_003495224.1 NC_013936_p82 hypothetical protein phrog_1385 unknown function unknown function 1 48518 48760