Genomic map of Clostridium phage phiCTP1 (NC_014457)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_014457
Definition
Clostridium phage phiCTP1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
59199
Host Name
Clostridium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
86
%GC
31.25
Number of singletons
39
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_003856877.1 NC_014457_p84 hypothetical protein singleton unknown function unknown function 1 57707 57982
YP_003856814.1 NC_014457_p21 hypothetical protein phrog_6541 unknown function unknown function 1 12256 12525
YP_003856839.1 NC_014457_p46 anaerobic ribonucleoside-triphosphate reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 33962 35722
YP_003856842.1 NC_014457_p49 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 36948 39245
YP_003856827.1 NC_014457_p34 hypothetical protein singleton unknown function unknown function 1 27030 27296
YP_003856829.1 NC_014457_p36 hypothetical protein singleton unknown function unknown function 1 27761 27967
YP_003856866.1 NC_014457_p73 hypothetical protein phrog_3489 unknown function unknown function 1 54080 54478
YP_003856860.1 NC_014457_p67 DNA polymerase III phrog_20214 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 50069 50977
YP_003856864.1 NC_014457_p71 RecA protein phrog_97 UvsX-like recombinase other 1 52353 53537
YP_003856872.1 NC_014457_p79 hypothetical protein singleton unknown function unknown function 1 56446 56673
YP_003856848.1 NC_014457_p55 hypothetical protein phrog_843 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 43209 43679
YP_003856862.1 NC_014457_p69 hypothetical protein singleton unknown function unknown function 1 51864 52115
YP_003856833.1 NC_014457_p40 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 30076 31410
YP_003856800.1 NC_014457_p7 hypothetical protein singleton unknown function unknown function 1 5364 5762
YP_003856817.1 NC_014457_p24 hypothetical protein singleton unknown function unknown function 1 16483 16737
YP_003856806.1 NC_014457_p13 hypothetical protein singleton unknown function unknown function 1 8676 8861
YP_003856876.1 NC_014457_p83 hypothetical protein singleton unknown function unknown function 1 57450 57701
YP_003856823.1 NC_014457_p30 hypothetical protein singleton unknown function unknown function 1 23583 24002
YP_003856794.1 NC_014457_p1 hypothetical protein phrog_23746 unknown function unknown function 1 46 624
YP_003856808.1 NC_014457_p15 hypothetical protein singleton unknown function unknown function 1 9182 9553
YP_003856865.1 NC_014457_p72 hypothetical protein singleton unknown function unknown function 1 53675 53896
YP_003856867.1 NC_014457_p74 hypothetical protein phrog_1485 unknown function unknown function 1 54479 55132
YP_003856834.1 NC_014457_p41 hypothetical protein singleton unknown function unknown function 1 31609 31749
YP_003856830.1 NC_014457_p37 hypothetical protein singleton unknown function unknown function 1 27988 28191
YP_003856804.1 NC_014457_p11 hypothetical protein phrog_909 major head protein head and packaging 1 7134 7532
YP_003856869.1 NC_014457_p76 hypothetical protein singleton unknown function unknown function 1 55343 55504
YP_003856858.1 NC_014457_p65 DNA polymerase III phrog_5846 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 48152 49246
YP_003856810.1 NC_014457_p17 hypothetical protein phrog_7585 unknown function unknown function 1 9905 10249
YP_003856863.1 NC_014457_p70 hypothetical protein singleton unknown function unknown function 1 52117 52350
YP_003856815.1 NC_014457_p22 tape measure protein phrog_1272 tail length tape measure protein tail 1 12537 15626
YP_003856812.1 NC_014457_p19 hypothetical protein phrog_4417 unknown function unknown function 1 10923 11831
YP_003856875.1 NC_014457_p82 hypothetical protein singleton unknown function unknown function 1 57331 57432
YP_003856859.1 NC_014457_p66 DNA polymerase III phrog_5846 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 49225 50067
YP_003856798.1 NC_014457_p5 hypothetical protein phrog_1233 unknown function unknown function 1 3950 4246
YP_003856868.1 NC_014457_p75 hypothetical protein singleton unknown function unknown function 1 55111 55356
YP_003856878.1 NC_014457_p85 hypothetical protein singleton unknown function unknown function 1 57996 58082
YP_003856845.1 NC_014457_p52 hypothetical protein singleton unknown function unknown function 1 40791 41306
YP_003856807.1 NC_014457_p14 hypothetical protein phrog_4020 unknown function unknown function 1 8874 9185
YP_003856824.1 NC_014457_p31 hypothetical protein singleton unknown function unknown function 1 24096 24494
YP_003856818.1 NC_014457_p25 hypothetical protein phrog_1401 unknown function unknown function 1 16756 17145
YP_003856799.1 NC_014457_p6 head morphogenesis protein phrog_1657 head morphogenesis head and packaging 1 4248 5276
YP_003856851.1 NC_014457_p58 hypothetical protein phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 44552 45076
YP_003856813.1 NC_014457_p20 hypothetical protein phrog_6280 unknown function unknown function 1 11871 12341
YP_003856795.1 NC_014457_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 578 1996
YP_003856809.1 NC_014457_p16 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 9555 9908
YP_003856811.1 NC_014457_p18 hypothetical protein phrog_6686 tail tube protein tail 1 10263 10865
YP_003856837.1 NC_014457_p44 hypothetical protein singleton unknown function unknown function 1 33468 33683
YP_003856835.1 NC_014457_p42 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 31760 32773
YP_003856797.1 NC_014457_p4 hypothetical protein phrog_64 portal protein head and packaging 1 2356 3945
YP_003856871.1 NC_014457_p78 hypothetical protein singleton unknown function unknown function 1 56163 56453
YP_003856846.1 NC_014457_p53 DNA polymerase III beta subunit phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism 1 41380 42435
YP_003856836.1 NC_014457_p43 response regulator phrog_351 RNA polymerase sigma factor transcription regulation 1 32840 33466
YP_003856847.1 NC_014457_p54 hypothetical protein phrog_1706 CRISPR/Cas system associated DNA, RNA and nucleotide metabolism 1 42428 43204
YP_003856822.1 NC_014457_p29 endolysin phrog_291 endolysin lysis 1 22746 23570
YP_003856832.1 NC_014457_p39 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 29382 30116
YP_003856841.1 NC_014457_p48 hypothetical protein phrog_14578 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 36265 36888
YP_003856853.1 NC_014457_p60 DNA ligase phrog_6466 DNA ligase DNA, RNA and nucleotide metabolism 1 45549 45905
YP_003856821.1 NC_014457_p28 predicted holin phrog_199 holin lysis 1 22331 22771
YP_003856861.1 NC_014457_p68 hypothetical protein phrog_6721 unknown function unknown function 1 51178 51846
YP_003856819.1 NC_014457_p26 hypothetical phage structural protein phrog_36443 unknown function unknown function 1 17175 20165
YP_003856803.1 NC_014457_p10 scaffold protein phrog_194 head scaffolding protein head and packaging 1 6427 7086
YP_003856840.1 NC_014457_p47 hypothetical protein singleton unknown function unknown function 1 35738 36184
YP_003856828.1 NC_014457_p35 hypothetical protein singleton unknown function unknown function 1 27356 27694
YP_003856849.1 NC_014457_p56 hypothetical protein singleton unknown function unknown function 1 43669 44172
YP_003856825.1 NC_014457_p32 hypothetical protein singleton unknown function unknown function 1 24620 25267
YP_003856874.1 NC_014457_p81 hypothetical protein singleton unknown function unknown function 1 56960 57310
YP_003856843.1 NC_014457_p50 hypothetical protein singleton unknown function unknown function 1 39298 39909
YP_003856856.1 NC_014457_p63 hypothetical protein singleton unknown function unknown function 1 46835 47896
YP_003856796.1 NC_014457_p3 hypothetical protein singleton unknown function unknown function 1 2008 2340
YP_003856831.1 NC_014457_p38 hypothetical protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 28285 29205
YP_003856801.1 NC_014457_p8 hypothetical protein phrog_1315 unknown function unknown function 1 5854 6243
YP_003856802.1 NC_014457_p9 hypothetical protein singleton unknown function unknown function 1 6231 6425
YP_003856852.1 NC_014457_p59 hypothetical protein singleton unknown function unknown function 1 45195 45341
YP_003856855.1 NC_014457_p62 hypothetical protein phrog_2002 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 46424 46762
YP_003856805.1 NC_014457_p12 hypothetical phage capsid protein phrog_29 major head protein head and packaging 1 7561 8601
YP_003856838.1 NC_014457_p45 glutaredoxin singleton thioredoxin domain DNA, RNA and nucleotide metabolism 1 33744 33968
YP_003856879.1 NC_014457_p86 hypothetical protein phrog_9079 unknown function unknown function 1 58697 59029
YP_003856826.1 NC_014457_p33 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 25300 27012
YP_003856816.1 NC_014457_p23 hypothetical protein phrog_33 distal tail protein Dit tail 1 15626 16462
YP_003856857.1 NC_014457_p64 hypothetical protein singleton unknown function unknown function 1 47908 48159
YP_003856820.1 NC_014457_p27 hypothetical protein singleton unknown function unknown function 1 20232 22229
YP_003856854.1 NC_014457_p61 RNA polymerase sigma factor phrog_351 RNA polymerase sigma factor transcription regulation 1 45895 46431
YP_003856850.1 NC_014457_p57 hypothetical protein singleton unknown function unknown function 1 44175 44552
YP_003856873.1 NC_014457_p80 hypothetical protein singleton unknown function unknown function 1 56815 56949
YP_003856844.1 NC_014457_p51 hypothetical protein phrog_12517 unknown function unknown function 1 39899 40798
YP_003856870.1 NC_014457_p77 hypothetical protein singleton unknown function unknown function 1 55519 56166