| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_014458 |
Definition |
Mycobacterium phage Angelica, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus. |
DB of origin |
REFSEQ |
Length |
59598 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
66.38 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_003856963.1 | NC_014458_p84 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 55387 | 55920 |
| YP_003856909.1 | NC_014458_p30 | LysB | phrog_102 | endolysin | lysis | 1 | 26428 | 27282 |
| YP_003856884.1 | NC_014458_p5 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1171 | 1371 |
| YP_003856894.1 | NC_014458_p15 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 9672 | 9953 |
| YP_003856886.1 | NC_014458_p7 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1575 | 2996 |
| YP_003856933.1 | NC_014458_p54 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 39652 | 39930 |
| YP_003856959.1 | NC_014458_p80 | hypothetical protein | phrog_6426 | unknown function | unknown function | 1 | 52934 | 53146 |
| YP_003856965.1 | NC_014458_p86 | hypothetical protein | phrog_5812 | unknown function | unknown function | 1 | 56249 | 57070 |
| YP_003856924.1 | NC_014458_p45 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 35893 | 36243 |
| YP_003856936.1 | NC_014458_p57 | hypothetical protein | phrog_2596 | unknown function | unknown function | 1 | 40695 | 40961 |
| YP_003856899.1 | NC_014458_p20 | tape measure | phrog_971 | endolysin | lysis | 1 | 12050 | 15883 |
| YP_003856905.1 | NC_014458_p26 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 20846 | 23278 |
| YP_003856913.1 | NC_014458_p34 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28309 | 29517 |
| YP_003856888.1 | NC_014458_p9 | protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4566 | 7073 |
| YP_003856890.1 | NC_014458_p11 | scaffold | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7293 | 7826 |
| YP_003856896.1 | NC_014458_p17 | major tail protein | phrog_117 | major tail protein | tail | 1 | 10475 | 11089 |
| YP_003856891.1 | NC_014458_p12 | capsid | phrog_10 | major head protein | head and packaging | 1 | 7902 | 8840 |
| YP_003856908.1 | NC_014458_p29 | LysA | phrog_1519 | endolysin | lysis | 1 | 24776 | 26431 |
| YP_003856897.1 | NC_014458_p18 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11203 | 12050 |
| YP_003856973.1 | NC_014458_p94 | HNH | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59237 | 59539 |
| YP_003856956.1 | NC_014458_p77 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 51899 | 52375 |
| YP_003856951.1 | NC_014458_p72 | hypothetical protein | phrog_4269 | unknown function | unknown function | 1 | 49888 | 50121 |
| YP_003856915.1 | NC_014458_p36 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 30126 | 30416 |
| YP_003856902.1 | NC_014458_p23 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 18888 | 19364 |
| YP_003856917.1 | NC_014458_p38 | hypothetical protein | phrog_4095 | unknown function | unknown function | 1 | 31296 | 31985 |
| YP_003856934.1 | NC_014458_p55 | hypothetical protein | phrog_4832 | unknown function | unknown function | 1 | 39927 | 40130 |
| YP_003856904.1 | NC_014458_p25 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 20537 | 20845 |
| YP_003856938.1 | NC_014458_p59 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 41275 | 41439 |
| YP_003856919.1 | NC_014458_p40 | Y-integrase | phrog_1 | integrase | integration and excision | 1 | 32708 | 33796 |
| YP_003856957.1 | NC_014458_p78 | hypothetical protein | phrog_5794 | unknown function | unknown function | 1 | 52375 | 52740 |
| YP_003856946.1 | NC_014458_p67 | DNA primase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 44312 | 46930 |
| YP_003856889.1 | NC_014458_p10 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 7070 | 7255 |
| YP_003856950.1 | NC_014458_p71 | peptidase | phrog_908 | unknown function | unknown function | 1 | 48688 | 49875 |
| YP_003856935.1 | NC_014458_p56 | DnaQ | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40141 | 40695 |
| YP_003856972.1 | NC_014458_p93 | hypothetical protein | phrog_5633 | unknown function | unknown function | 1 | 59058 | 59240 |
| YP_003856881.1 | NC_014458_p2 | hypothetical protein | phrog_5284 | unknown function | unknown function | 1 | 294 | 479 |
| YP_003856954.1 | NC_014458_p75 | hypothetical protein | phrog_5776 | unknown function | unknown function | 1 | 50875 | 51006 |
| YP_003856964.1 | NC_014458_p85 | hypothetical protein | phrog_3665 | unknown function | unknown function | 1 | 55917 | 56078 |
| YP_003856895.1 | NC_014458_p16 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9950 | 10375 |
| YP_003856969.1 | NC_014458_p90 | hypothetical protein | phrog_6135 | unknown function | unknown function | 1 | 58163 | 58426 |
| YP_003856928.1 | NC_014458_p49 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 37583 | 37846 |
| YP_003856961.1 | NC_014458_p82 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 54442 | 54828 |
| YP_003856968.1 | NC_014458_p89 | hypothetical protein | phrog_4560 | unknown function | unknown function | 1 | 57785 | 58054 |
| YP_003856925.1 | NC_014458_p46 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 36422 | 36589 |
| YP_003856953.1 | NC_014458_p74 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 50513 | 50788 |
| YP_003856921.1 | NC_014458_p42 | hypothetical protein | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 34829 | 35209 |
| YP_003856939.1 | NC_014458_p60 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41436 | 42323 |
| YP_003856945.1 | NC_014458_p66 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43899 | 44270 |
| YP_003856947.1 | NC_014458_p68 | RusA | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47327 | 48037 |
| YP_003856967.1 | NC_014458_p88 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 57421 | 57636 |
| YP_003856918.1 | NC_014458_p39 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 32048 | 32350 |
| YP_003856949.1 | NC_014458_p70 | hypothetical protein | phrog_6689 | unknown function | unknown function | 1 | 48488 | 48691 |
| YP_003856911.1 | NC_014458_p32 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 27736 | 28074 |
| YP_003856907.1 | NC_014458_p28 | phi:0000326 - phage function unknown | phrog_240 | head protein | head and packaging | 1 | 24387 | 24758 |
| YP_003856926.1 | NC_014458_p47 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 36586 | 36798 |
| YP_003856940.1 | NC_014458_p61 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 42320 | 42553 |
| YP_003856912.1 | NC_014458_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28071 | 28322 |
| YP_003856898.1 | NC_014458_p19 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11203 | 11640 |
| YP_003856960.1 | NC_014458_p81 | RtcB | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 53258 | 54445 |
| YP_003856916.1 | NC_014458_p37 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 30492 | 31181 |
| YP_003856882.1 | NC_014458_p3 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 476 | 730 |
| YP_003856887.1 | NC_014458_p8 | portal | phrog_104 | portal protein | head and packaging | 1 | 3008 | 4561 |
| YP_003856892.1 | NC_014458_p13 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8952 | 9338 |
| YP_003856930.1 | NC_014458_p51 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 38715 | 38885 |
| YP_003856931.1 | NC_014458_p52 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 38918 | 39268 |
| YP_003856943.1 | NC_014458_p64 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 43046 | 43555 |
| YP_003856958.1 | NC_014458_p79 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 52740 | 52937 |
| YP_003856906.1 | NC_014458_p27 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 23290 | 24303 |
| YP_003856885.1 | NC_014458_p6 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 1364 | 1591 |
| YP_003856893.1 | NC_014458_p14 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 9335 | 9691 |
| YP_003856920.1 | NC_014458_p41 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 33899 | 34792 |
| YP_003856966.1 | NC_014458_p87 | hypothetical protein | phrog_5243 | unknown function | unknown function | 1 | 57102 | 57299 |
| YP_003856971.1 | NC_014458_p92 | hypothetical protein | phrog_4561 | unknown function | unknown function | 1 | 58831 | 59061 |
| YP_003856922.1 | NC_014458_p43 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 35389 | 35628 |
| YP_003856952.1 | NC_014458_p73 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 50118 | 50390 |
| YP_003856962.1 | NC_014458_p83 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 54828 | 55379 |
| YP_003856941.1 | NC_014458_p62 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 42629 | 42844 |
| YP_003856948.1 | NC_014458_p69 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 48030 | 48491 |
| YP_003856927.1 | NC_014458_p48 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 36795 | 37586 |
| YP_003856942.1 | NC_014458_p63 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 42844 | 42963 |
| YP_003856970.1 | NC_014458_p91 | hypothetical protein | phrog_13379 | unknown function | unknown function | 1 | 58503 | 58850 |
| YP_003856910.1 | NC_014458_p31 | hypothetical protein | phrog_565 | holin | lysis | 1 | 27293 | 27733 |
| YP_003856880.1 | NC_014458_p1 | hypothetical protein | phrog_4624 | unknown function | unknown function | 1 | 79 | 297 |
| YP_003856903.1 | NC_014458_p24 | minor tail subunit | phrog_1565 | minor tail protein | tail | 1 | 19448 | 20530 |
| YP_003856955.1 | NC_014458_p76 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 51003 | 51902 |
| YP_003856929.1 | NC_014458_p50 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 37843 | 38703 |
| YP_003856883.1 | NC_014458_p4 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 727 | 945 |
| YP_003856923.1 | NC_014458_p44 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 35625 | 35891 |
| YP_003856932.1 | NC_014458_p53 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 39265 | 39633 |
| YP_003856937.1 | NC_014458_p58 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 40958 | 41278 |
| YP_003856944.1 | NC_014458_p65 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 43657 | 43899 |
| YP_003856914.1 | NC_014458_p35 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29710 | 30141 |
| YP_003856900.1 | NC_014458_p21 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 15985 | 17121 |
| YP_003856901.1 | NC_014458_p22 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 17122 | 18888 |