Genomic map of Mycobacterium virus Crimd (NC_014459)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_014459
Definition
Mycobacterium phage CrimD, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus.
DB of origin
REFSEQ
Length
59798
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
95
%GC
66.87
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_003856992.1 NC_014459_p19 tail assembly chaperone phrog_1861 unknown function unknown function 1 11199 11639
YP_003857056.1 NC_014459_p83 hypothetical protein phrog_6426 unknown function unknown function 1 53703 53855
YP_003857045.1 NC_014459_p72 hypothetical protein phrog_20209 unknown function unknown function 1 49015 49320
YP_003857063.1 NC_014459_p90 hypothetical protein phrog_5243 unknown function unknown function 1 57659 57856
YP_003856983.1 NC_014459_p10 hypothetical protein phrog_1757 unknown function unknown function 1 7062 7247
YP_003857053.1 NC_014459_p80 hypothetical protein phrog_3868 unknown function unknown function 1 52882 53358
YP_003856988.1 NC_014459_p15 hypothetical protein phrog_387 neck protein connector 1 9669 9950
YP_003856987.1 NC_014459_p14 hypothetical protein phrog_763 head-tail adaptor connector 1 9332 9688
YP_003857059.1 NC_014459_p86 hypothetical protein phrog_2822 unknown function unknown function 1 55555 56106
YP_003857049.1 NC_014459_p76 hypothetical protein phrog_1338 unknown function unknown function 1 51113 51385
YP_003857067.1 NC_014459_p94 hypothetical protein phrog_5633 unknown function unknown function 1 59259 59441
YP_003856974.1 NC_014459_p1 hypothetical protein phrog_4624 unknown function unknown function 1 39 272
YP_003856976.1 NC_014459_p3 hypothetical protein phrog_2074 unknown function unknown function 1 451 705
YP_003857007.1 NC_014459_p34 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 28326 29534
YP_003857066.1 NC_014459_p93 hypothetical protein phrog_4561 unknown function unknown function 1 59032 59262
YP_003856979.1 NC_014459_p6 hypothetical protein phrog_1459 terminase small subunit head and packaging 1 1341 1577
YP_003856978.1 NC_014459_p5 hypothetical protein phrog_2622 unknown function unknown function 1 1154 1357
YP_003857004.1 NC_014459_p31 hypothetical protein phrog_565 holin lysis 1 27313 27753
YP_003857019.1 NC_014459_p46 hypothetical protein phrog_2654 unknown function unknown function 1 36415 36582
YP_003857012.1 NC_014459_p39 hypothetical protein phrog_658 unknown function unknown function -1 32062 32340
YP_003856998.1 NC_014459_p25 hypothetical protein phrog_1736 minor tail protein tail 1 20540 20848
YP_003857000.1 NC_014459_p27 hypothetical protein phrog_416 minor tail protein tail 1 23293 24306
YP_003856984.1 NC_014459_p11 scaffold phrog_1793 head scaffolding protein head and packaging 1 7284 7826
YP_003857048.1 NC_014459_p75 hypothetical protein phrog_4269 unknown function unknown function 1 50883 51116
YP_003857023.1 NC_014459_p50 hypothetical protein phrog_2781 unknown function unknown function 1 37836 38786
YP_003857034.1 NC_014459_p61 hypothetical protein phrog_1674 exonuclease DNA, RNA and nucleotide metabolism 1 41816 42694
YP_003857040.1 NC_014459_p67 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 44443 44685
YP_003857068.1 NC_014459_p95 HnH phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 59438 59740
YP_003857052.1 NC_014459_p79 hypothetical protein phrog_2342 unknown function unknown function 1 51992 52885
YP_003857027.1 NC_014459_p54 hypothetical protein phrog_1956 unknown function unknown function 1 39733 40011
YP_003856991.1 NC_014459_p18 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 11199 12049
YP_003856981.1 NC_014459_p8 portal phrog_104 portal protein head and packaging 1 2994 4547
YP_003856995.1 NC_014459_p22 minor tail subunit phrog_110 minor tail protein tail 1 17125 18891
YP_003857060.1 NC_014459_p87 hypothetical protein phrog_2493 unknown function unknown function 1 56117 56668
YP_003857036.1 NC_014459_p63 hypothetical protein phrog_9435 unknown function unknown function 1 42939 43418
YP_003857018.1 NC_014459_p45 hypothetical protein phrog_2908 unknown function unknown function 1 35903 36241
YP_003857029.1 NC_014459_p56 DnaQ phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 40219 40773
YP_003857010.1 NC_014459_p37 hypothetical protein phrog_2433 unknown function unknown function 1 30511 31197
YP_003857061.1 NC_014459_p88 hypothetical protein phrog_3665 unknown function unknown function 1 56665 56826
YP_003857013.1 NC_014459_p40 Y-integrase phrog_1 integrase integration and excision 1 32722 33810
YP_003857064.1 NC_014459_p91 hypothetical protein phrog_353 toxin moron, auxiliary metabolic gene and host takeover 1 57977 58192
YP_003856999.1 NC_014459_p26 minor tail subunit phrog_346 minor tail protein tail 1 20849 23281
YP_003857037.1 NC_014459_p64 hypothetical protein phrog_1581 unknown function unknown function 1 43415 43630
YP_003857017.1 NC_014459_p44 hypothetical protein phrog_1840 excisionase integration and excision 1 35635 35901
YP_003857005.1 NC_014459_p32 hypothetical protein phrog_3413 unknown function unknown function 1 27750 28091
YP_003857039.1 NC_014459_p66 hypothetical protein phrog_1911 unknown function unknown function 1 43832 44341
YP_003856975.1 NC_014459_p2 hypothetical protein phrog_5284 unknown function unknown function 1 272 454
YP_003857022.1 NC_014459_p49 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 37576 37839
YP_003856997.1 NC_014459_p24 minor tail subunit phrog_1565 minor tail protein tail 1 19451 20533
YP_003857026.1 NC_014459_p53 hypothetical protein phrog_3186 unknown function unknown function 1 39352 39732
YP_003857050.1 NC_014459_p77 hypothetical protein phrog_2974 unknown function unknown function 1 51498 51776
YP_003856996.1 NC_014459_p23 hypothetical protein phrog_1697 minor tail protein tail 1 18891 19367
YP_003857062.1 NC_014459_p89 hypothetical protein phrog_5812 unknown function unknown function 1 56998 57627
YP_003856982.1 NC_014459_p9 protease phrog_1752 head maturation protease head and packaging 1 4492 7065
YP_003856993.1 NC_014459_p20 tape measure phrog_971 endolysin lysis 1 12050 15886
YP_003857042.1 NC_014459_p69 hypothetical protein phrog_1571 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44873 45259
YP_003857044.1 NC_014459_p71 RusA phrog_3055 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 48327 49022
YP_003857011.1 NC_014459_p38 hypothetical protein phrog_4095 unknown function unknown function 1 31312 31998
YP_003857046.1 NC_014459_p73 hypothetical protein phrog_3478 unknown function unknown function 1 49313 49774
YP_003856985.1 NC_014459_p12 capsid phrog_10 major head protein head and packaging 1 7902 8837
YP_003857008.1 NC_014459_p35 hypothetical protein phrog_2311 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 29656 30159
YP_003857041.1 NC_014459_p68 hypothetical protein phrog_3641 unknown function unknown function 1 44682 44891
YP_003857025.1 NC_014459_p52 hypothetical protein phrog_301 secreted protein other 1 39005 39355
YP_003857014.1 NC_014459_p41 hypothetical protein phrog_950 unknown function unknown function -1 33914 34708
YP_003857001.1 NC_014459_p28 hypothetical protein phrog_240 head protein head and packaging 1 24388 24759
YP_003857021.1 NC_014459_p48 hypothetical protein phrog_2286 unknown function unknown function 1 36788 37579
YP_003856989.1 NC_014459_p16 hypothetical protein phrog_123 tail terminator connector 1 9947 10372
YP_003857065.1 NC_014459_p92 hypothetical protein phrog_4560 unknown function unknown function 1 58340 58609
YP_003857054.1 NC_014459_p81 hypothetical protein phrog_20353 unknown function unknown function 1 53342 53515
YP_003856990.1 NC_014459_p17 major tail subunit phrog_117 major tail protein tail 1 10472 11086
YP_003856994.1 NC_014459_p21 minor tail subunit phrog_106 minor tail protein tail 1 15988 17124
YP_003857009.1 NC_014459_p36 hypothetical protein phrog_4112 unknown function unknown function 1 30144 30434
YP_003857028.1 NC_014459_p55 hypothetical protein phrog_4832 unknown function unknown function 1 40008 40208
YP_003857038.1 NC_014459_p65 hypothetical protein phrog_2388 unknown function unknown function 1 43630 43749
YP_003856977.1 NC_014459_p4 hypothetical protein phrog_2293 unknown function unknown function 1 702 929
YP_003857002.1 NC_014459_p29 LysA phrog_1519 endolysin lysis 1 24778 26433
YP_003857024.1 NC_014459_p51 hypothetical protein phrog_542 unknown function unknown function 1 38798 38971
YP_003857033.1 NC_014459_p60 hypothetical protein phrog_1498 unknown function unknown function 1 41655 41819
YP_003857003.1 NC_014459_p30 LysB phrog_102 endolysin lysis 1 26430 27302
YP_003857055.1 NC_014459_p82 hypothetical protein phrog_666 unknown function unknown function 1 53509 53706
YP_003857047.1 NC_014459_p74 peptidase phrog_908 unknown function unknown function 1 49771 50871
YP_003857031.1 NC_014459_p58 hypothetical protein phrog_2596 unknown function unknown function 1 41075 41341
YP_003857043.1 NC_014459_p70 DNA primase/helicase phrog_2478 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 45301 47919
YP_003857032.1 NC_014459_p59 hypothetical protein phrog_2870 unknown function unknown function 1 41338 41658
YP_003857015.1 NC_014459_p42 hypothetical protein phrog_1746 transcriptional repressor transcription regulation -1 34843 35220
YP_003857030.1 NC_014459_p57 hypothetical protein phrog_2870 unknown function unknown function 1 40770 41075
YP_003857006.1 NC_014459_p33 hypothetical protein phrog_1738 unknown function unknown function 1 28088 28339
YP_003856980.1 NC_014459_p7 terminase phrog_2 terminase large subunit head and packaging 1 1561 2982
YP_003857016.1 NC_014459_p43 hypothetical protein phrog_1702 transcriptional repressor transcription regulation 1 35399 35638
YP_003857058.1 NC_014459_p85 hypothetical protein phrog_3167 unknown function unknown function 1 55154 55555
YP_003857057.1 NC_014459_p84 RtcB phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism 1 53970 55157
YP_003857051.1 NC_014459_p78 hypothetical protein phrog_5776 unknown function unknown function 1 51864 51995
YP_003856986.1 NC_014459_p13 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 8949 9335
YP_003857020.1 NC_014459_p47 hypothetical protein phrog_3903 unknown function unknown function 1 36576 36791
YP_003857035.1 NC_014459_p62 hypothetical protein phrog_3492 unknown function unknown function 1 42691 42885