| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_014459 |
Definition |
Mycobacterium phage CrimD, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus. |
DB of origin |
REFSEQ |
Length |
59798 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
95 |
%GC |
66.87 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_003856992.1 | NC_014459_p19 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11199 | 11639 |
| YP_003857056.1 | NC_014459_p83 | hypothetical protein | phrog_6426 | unknown function | unknown function | 1 | 53703 | 53855 |
| YP_003857045.1 | NC_014459_p72 | hypothetical protein | phrog_20209 | unknown function | unknown function | 1 | 49015 | 49320 |
| YP_003857063.1 | NC_014459_p90 | hypothetical protein | phrog_5243 | unknown function | unknown function | 1 | 57659 | 57856 |
| YP_003856983.1 | NC_014459_p10 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 7062 | 7247 |
| YP_003857053.1 | NC_014459_p80 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 52882 | 53358 |
| YP_003856988.1 | NC_014459_p15 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 9669 | 9950 |
| YP_003856987.1 | NC_014459_p14 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 9332 | 9688 |
| YP_003857059.1 | NC_014459_p86 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 55555 | 56106 |
| YP_003857049.1 | NC_014459_p76 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 51113 | 51385 |
| YP_003857067.1 | NC_014459_p94 | hypothetical protein | phrog_5633 | unknown function | unknown function | 1 | 59259 | 59441 |
| YP_003856974.1 | NC_014459_p1 | hypothetical protein | phrog_4624 | unknown function | unknown function | 1 | 39 | 272 |
| YP_003856976.1 | NC_014459_p3 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 451 | 705 |
| YP_003857007.1 | NC_014459_p34 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28326 | 29534 |
| YP_003857066.1 | NC_014459_p93 | hypothetical protein | phrog_4561 | unknown function | unknown function | 1 | 59032 | 59262 |
| YP_003856979.1 | NC_014459_p6 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 1341 | 1577 |
| YP_003856978.1 | NC_014459_p5 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1154 | 1357 |
| YP_003857004.1 | NC_014459_p31 | hypothetical protein | phrog_565 | holin | lysis | 1 | 27313 | 27753 |
| YP_003857019.1 | NC_014459_p46 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 36415 | 36582 |
| YP_003857012.1 | NC_014459_p39 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 32062 | 32340 |
| YP_003856998.1 | NC_014459_p25 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 20540 | 20848 |
| YP_003857000.1 | NC_014459_p27 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 23293 | 24306 |
| YP_003856984.1 | NC_014459_p11 | scaffold | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7284 | 7826 |
| YP_003857048.1 | NC_014459_p75 | hypothetical protein | phrog_4269 | unknown function | unknown function | 1 | 50883 | 51116 |
| YP_003857023.1 | NC_014459_p50 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 37836 | 38786 |
| YP_003857034.1 | NC_014459_p61 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41816 | 42694 |
| YP_003857040.1 | NC_014459_p67 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 44443 | 44685 |
| YP_003857068.1 | NC_014459_p95 | HnH | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59438 | 59740 |
| YP_003857052.1 | NC_014459_p79 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 51992 | 52885 |
| YP_003857027.1 | NC_014459_p54 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 39733 | 40011 |
| YP_003856991.1 | NC_014459_p18 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11199 | 12049 |
| YP_003856981.1 | NC_014459_p8 | portal | phrog_104 | portal protein | head and packaging | 1 | 2994 | 4547 |
| YP_003856995.1 | NC_014459_p22 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 17125 | 18891 |
| YP_003857060.1 | NC_014459_p87 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 56117 | 56668 |
| YP_003857036.1 | NC_014459_p63 | hypothetical protein | phrog_9435 | unknown function | unknown function | 1 | 42939 | 43418 |
| YP_003857018.1 | NC_014459_p45 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 35903 | 36241 |
| YP_003857029.1 | NC_014459_p56 | DnaQ | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40219 | 40773 |
| YP_003857010.1 | NC_014459_p37 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 30511 | 31197 |
| YP_003857061.1 | NC_014459_p88 | hypothetical protein | phrog_3665 | unknown function | unknown function | 1 | 56665 | 56826 |
| YP_003857013.1 | NC_014459_p40 | Y-integrase | phrog_1 | integrase | integration and excision | 1 | 32722 | 33810 |
| YP_003857064.1 | NC_014459_p91 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 57977 | 58192 |
| YP_003856999.1 | NC_014459_p26 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 20849 | 23281 |
| YP_003857037.1 | NC_014459_p64 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 43415 | 43630 |
| YP_003857017.1 | NC_014459_p44 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 35635 | 35901 |
| YP_003857005.1 | NC_014459_p32 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 27750 | 28091 |
| YP_003857039.1 | NC_014459_p66 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 43832 | 44341 |
| YP_003856975.1 | NC_014459_p2 | hypothetical protein | phrog_5284 | unknown function | unknown function | 1 | 272 | 454 |
| YP_003857022.1 | NC_014459_p49 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 37576 | 37839 |
| YP_003856997.1 | NC_014459_p24 | minor tail subunit | phrog_1565 | minor tail protein | tail | 1 | 19451 | 20533 |
| YP_003857026.1 | NC_014459_p53 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 39352 | 39732 |
| YP_003857050.1 | NC_014459_p77 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 51498 | 51776 |
| YP_003856996.1 | NC_014459_p23 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 18891 | 19367 |
| YP_003857062.1 | NC_014459_p89 | hypothetical protein | phrog_5812 | unknown function | unknown function | 1 | 56998 | 57627 |
| YP_003856982.1 | NC_014459_p9 | protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4492 | 7065 |
| YP_003856993.1 | NC_014459_p20 | tape measure | phrog_971 | endolysin | lysis | 1 | 12050 | 15886 |
| YP_003857042.1 | NC_014459_p69 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44873 | 45259 |
| YP_003857044.1 | NC_014459_p71 | RusA | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 48327 | 49022 |
| YP_003857011.1 | NC_014459_p38 | hypothetical protein | phrog_4095 | unknown function | unknown function | 1 | 31312 | 31998 |
| YP_003857046.1 | NC_014459_p73 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 49313 | 49774 |
| YP_003856985.1 | NC_014459_p12 | capsid | phrog_10 | major head protein | head and packaging | 1 | 7902 | 8837 |
| YP_003857008.1 | NC_014459_p35 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29656 | 30159 |
| YP_003857041.1 | NC_014459_p68 | hypothetical protein | phrog_3641 | unknown function | unknown function | 1 | 44682 | 44891 |
| YP_003857025.1 | NC_014459_p52 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 39005 | 39355 |
| YP_003857014.1 | NC_014459_p41 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 33914 | 34708 |
| YP_003857001.1 | NC_014459_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24388 | 24759 |
| YP_003857021.1 | NC_014459_p48 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 36788 | 37579 |
| YP_003856989.1 | NC_014459_p16 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9947 | 10372 |
| YP_003857065.1 | NC_014459_p92 | hypothetical protein | phrog_4560 | unknown function | unknown function | 1 | 58340 | 58609 |
| YP_003857054.1 | NC_014459_p81 | hypothetical protein | phrog_20353 | unknown function | unknown function | 1 | 53342 | 53515 |
| YP_003856990.1 | NC_014459_p17 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 10472 | 11086 |
| YP_003856994.1 | NC_014459_p21 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 15988 | 17124 |
| YP_003857009.1 | NC_014459_p36 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 30144 | 30434 |
| YP_003857028.1 | NC_014459_p55 | hypothetical protein | phrog_4832 | unknown function | unknown function | 1 | 40008 | 40208 |
| YP_003857038.1 | NC_014459_p65 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 43630 | 43749 |
| YP_003856977.1 | NC_014459_p4 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 702 | 929 |
| YP_003857002.1 | NC_014459_p29 | LysA | phrog_1519 | endolysin | lysis | 1 | 24778 | 26433 |
| YP_003857024.1 | NC_014459_p51 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 38798 | 38971 |
| YP_003857033.1 | NC_014459_p60 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 41655 | 41819 |
| YP_003857003.1 | NC_014459_p30 | LysB | phrog_102 | endolysin | lysis | 1 | 26430 | 27302 |
| YP_003857055.1 | NC_014459_p82 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 53509 | 53706 |
| YP_003857047.1 | NC_014459_p74 | peptidase | phrog_908 | unknown function | unknown function | 1 | 49771 | 50871 |
| YP_003857031.1 | NC_014459_p58 | hypothetical protein | phrog_2596 | unknown function | unknown function | 1 | 41075 | 41341 |
| YP_003857043.1 | NC_014459_p70 | DNA primase/helicase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 45301 | 47919 |
| YP_003857032.1 | NC_014459_p59 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 41338 | 41658 |
| YP_003857015.1 | NC_014459_p42 | hypothetical protein | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 34843 | 35220 |
| YP_003857030.1 | NC_014459_p57 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 40770 | 41075 |
| YP_003857006.1 | NC_014459_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28088 | 28339 |
| YP_003856980.1 | NC_014459_p7 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1561 | 2982 |
| YP_003857016.1 | NC_014459_p43 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 35399 | 35638 |
| YP_003857058.1 | NC_014459_p85 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 55154 | 55555 |
| YP_003857057.1 | NC_014459_p84 | RtcB | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 53970 | 55157 |
| YP_003857051.1 | NC_014459_p78 | hypothetical protein | phrog_5776 | unknown function | unknown function | 1 | 51864 | 51995 |
| YP_003856986.1 | NC_014459_p13 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8949 | 9335 |
| YP_003857020.1 | NC_014459_p47 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 36576 | 36791 |
| YP_003857035.1 | NC_014459_p62 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 42691 | 42885 |