| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_015158 |
Definition |
Vibrio phage ICP2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
49675 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
72 |
%GC |
42.67 |
Number of singletons |
5 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004251226.1 | NC_015158_p55 | hypothetical protein | phrog_19119 | unknown function | unknown function | 1 | 43651 | 43893 |
| YP_004251217.1 | NC_015158_p46 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 37097 | 37912 |
| YP_004251178.1 | NC_015158_p7 | hypothetical protein | phrog_8168 | unknown function | unknown function | -1 | 7678 | 8124 |
| YP_004251176.1 | NC_015158_p5 | hypothetical protein | phrog_17082 | unknown function | unknown function | -1 | 1422 | 3404 |
| YP_004251189.1 | NC_015158_p18 | hypothetical protein | phrog_8956 | unknown function | unknown function | -1 | 16744 | 16983 |
| YP_004251180.1 | NC_015158_p9 | hypothetical protein | phrog_8094 | tail appendage | tail | -1 | 8575 | 10779 |
| YP_004251206.1 | NC_015158_p35 | hypothetical protein | phrog_16974 | unknown function | unknown function | 1 | 30490 | 30987 |
| YP_004251227.1 | NC_015158_p56 | hypothetical protein | phrog_18273 | unknown function | unknown function | 1 | 43896 | 44114 |
| YP_004251212.1 | NC_015158_p41 | cobalamin biosynthesis protein CobT | phrog_17276 | aerobic cobaltochelatase CobT subunit | moron, auxiliary metabolic gene and host takeover | 1 | 33357 | 35099 |
| YP_004251228.1 | NC_015158_p57 | hypothetical protein | phrog_16403 | unknown function | unknown function | 1 | 44104 | 44544 |
| YP_004251191.1 | NC_015158_p20 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | -1 | 18739 | 20265 |
| YP_004251242.1 | NC_015158_p71 | hypothetical protein | phrog_21384 | unknown function | unknown function | 1 | 49083 | 49394 |
| YP_004251207.1 | NC_015158_p36 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 31055 | 31648 |
| YP_004251220.1 | NC_015158_p49 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 38852 | 40111 |
| YP_004251214.1 | NC_015158_p43 | hypothetical protein | phrog_17083 | unknown function | unknown function | 1 | 36240 | 36542 |
| YP_004251229.1 | NC_015158_p58 | hypothetical protein | phrog_16403 | unknown function | unknown function | 1 | 44278 | 44544 |
| YP_004251235.1 | NC_015158_p64 | hypothetical protein | phrog_19822 | unknown function | unknown function | 1 | 46837 | 47079 |
| YP_004251238.1 | NC_015158_p67 | hypothetical protein | phrog_20277 | unknown function | unknown function | 1 | 48007 | 48219 |
| YP_004251213.1 | NC_015158_p42 | cobalamin biosynthesis protein CobS | phrog_249 | porphyrin biosynthesis | moron, auxiliary metabolic gene and host takeover | 1 | 35115 | 36230 |
| YP_004251185.1 | NC_015158_p14 | hypothetical protein | phrog_17462 | unknown function | unknown function | -1 | 12658 | 14286 |
| YP_004251223.1 | NC_015158_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42689 | 42790 |
| YP_004251200.1 | NC_015158_p29 | hypothetical protein | phrog_14633 | unknown function | unknown function | 1 | 28792 | 29022 |
| YP_004251218.1 | NC_015158_p47 | hypothetical protein | phrog_18510 | unknown function | unknown function | 1 | 37903 | 38436 |
| YP_004251202.1 | NC_015158_p31 | hypothetical protein | phrog_18025 | unknown function | unknown function | 1 | 29360 | 29611 |
| YP_004251243.1 | NC_015158_p72 | hypothetical protein | phrog_19358 | unknown function | unknown function | 1 | 49442 | 49639 |
| YP_004251190.1 | NC_015158_p19 | hypothetical protein | phrog_332 | head-tail adaptor | connector | -1 | 16994 | 18739 |
| YP_004251209.1 | NC_015158_p38 | hypothetical protein | phrog_17022 | unknown function | unknown function | 1 | 32020 | 32805 |
| YP_004251197.1 | NC_015158_p26 | hypothetical protein | phrog_15513 | unknown function | unknown function | 1 | 27842 | 28084 |
| YP_004251187.1 | NC_015158_p16 | hypothetical protein | phrog_267 | major head protein | head and packaging | -1 | 14950 | 15921 |
| YP_004251175.1 | NC_015158_p4 | hypothetical protein | phrog_21136 | unknown function | unknown function | -1 | 1123 | 1419 |
| YP_004251201.1 | NC_015158_p30 | hypothetical protein | phrog_22803 | unknown function | unknown function | 1 | 29099 | 29302 |
| YP_004251216.1 | NC_015158_p45 | hypothetical protein | phrog_19971 | unknown function | unknown function | 1 | 36841 | 37131 |
| YP_004251236.1 | NC_015158_p65 | hypothetical protein | phrog_715 | MazG-like pyrophosphatase | other | 1 | 47076 | 47414 |
| YP_004251188.1 | NC_015158_p17 | hypothetical protein | phrog_7931 | unknown function | unknown function | -1 | 15941 | 16690 |
| YP_004251237.1 | NC_015158_p66 | thymidine kinase | phrog_592 | thymidine kinase | other | 1 | 47414 | 48010 |
| YP_004251222.1 | NC_015158_p51 | hypothetical protein | phrog_2081 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41371 | 41820 |
| YP_004251184.1 | NC_015158_p13 | hypothetical protein | phrog_18064 | unknown function | unknown function | -1 | 12052 | 12465 |
| YP_004251232.1 | NC_015158_p61 | hypothetical protein | phrog_25943 | unknown function | unknown function | 1 | 45602 | 45733 |
| YP_004251173.1 | NC_015158_p2 | hypothetical protein | phrog_16830 | unknown function | unknown function | -1 | 545 | 925 |
| YP_004251221.1 | NC_015158_p50 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 40112 | 42680 |
| YP_004251179.1 | NC_015158_p8 | hypothetical protein | phrog_1249 | acetyltransferase | other | -1 | 8126 | 8578 |
| YP_004251194.1 | NC_015158_p23 | hypothetical protein | phrog_10745 | unknown function | unknown function | -1 | 21102 | 22151 |
| YP_004251240.1 | NC_015158_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48748 | 48825 |
| YP_004251193.1 | NC_015158_p22 | hypothetical protein | phrog_2432 | unknown function | unknown function | -1 | 20814 | 21092 |
| YP_004251205.1 | NC_015158_p34 | hypothetical protein | phrog_18100 | unknown function | unknown function | 1 | 30103 | 30435 |
| YP_004251219.1 | NC_015158_p48 | hypothetical protein | phrog_16700 | unknown function | unknown function | 1 | 38439 | 38858 |
| YP_004251239.1 | NC_015158_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48339 | 48527 |
| YP_004251234.1 | NC_015158_p63 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 46148 | 46837 |
| YP_004251186.1 | NC_015158_p15 | hypothetical protein | phrog_18422 | unknown function | unknown function | -1 | 14371 | 14880 |
| YP_004251215.1 | NC_015158_p44 | hypothetical protein | phrog_16777 | unknown function | unknown function | 1 | 36523 | 36786 |
| YP_004251225.1 | NC_015158_p54 | hypothetical protein | phrog_18140 | unknown function | unknown function | 1 | 43099 | 43593 |
| YP_004251182.1 | NC_015158_p11 | hypothetical protein | phrog_7592 | tail protein | tail | -1 | 10971 | 11765 |
| YP_004251174.1 | NC_015158_p3 | hypothetical protein | phrog_3899 | unknown function | unknown function | -1 | 855 | 1154 |
| YP_004251177.1 | NC_015158_p6 | hypothetical protein | phrog_12003 | internal virion protein | head and packaging | -1 | 3411 | 7661 |
| YP_004251203.1 | NC_015158_p32 | hypothetical protein | phrog_17158 | unknown function | unknown function | 1 | 29630 | 29818 |
| YP_004251241.1 | NC_015158_p70 | hypothetical protein | phrog_11040 | unknown function | unknown function | 1 | 48865 | 49083 |
| YP_004251181.1 | NC_015158_p10 | hypothetical protein | phrog_9082 | unknown function | unknown function | -1 | 10760 | 10960 |
| YP_004251192.1 | NC_015158_p21 | hypothetical protein | phrog_8035 | unknown function | unknown function | -1 | 20258 | 20761 |
| YP_004251233.1 | NC_015158_p62 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45714 | 46151 |
| YP_004251198.1 | NC_015158_p27 | hypothetical protein | phrog_14737 | unknown function | unknown function | 1 | 28102 | 28593 |
| YP_004251211.1 | NC_015158_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33071 | 33355 |
| YP_004251231.1 | NC_015158_p60 | hypothetical protein | phrog_19549 | unknown function | unknown function | 1 | 45367 | 45609 |
| YP_004251230.1 | NC_015158_p59 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 44546 | 45397 |
| YP_004251208.1 | NC_015158_p37 | hypothetical protein | phrog_17353 | unknown function | unknown function | 1 | 31652 | 32020 |
| YP_004251204.1 | NC_015158_p33 | hypothetical protein | phrog_21997 | unknown function | unknown function | 1 | 29888 | 30082 |
| YP_004251199.1 | NC_015158_p28 | hypothetical protein | phrog_21943 | unknown function | unknown function | 1 | 28664 | 28795 |
| YP_004251195.1 | NC_015158_p24 | phage tail fiber protein | phrog_14064 | tail fiber protein | tail | -1 | 22161 | 23780 |
| YP_004251183.1 | NC_015158_p12 | hypothetical protein | phrog_4590 | unknown function | unknown function | -1 | 11765 | 12052 |
| YP_004251224.1 | NC_015158_p53 | endonuclease | phrog_2914 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 42763 | 43053 |
| YP_004251210.1 | NC_015158_p39 | hypothetical protein | phrog_18043 | unknown function | unknown function | 1 | 32878 | 33054 |
| YP_004251196.1 | NC_015158_p25 | hypothetical protein | phrog_17587 | tail fiber protein | tail | -1 | 23791 | 26088 |
| YP_004251172.1 | NC_015158_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 129 | 446 |