Genomic map of Vibrio phage ICP3 (NC_015159)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_015159
Definition
Vibrio phage ICP3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Chatterjeevirus; Vibrio virus ICP3.
DB of origin
REFSEQ
Length
39162
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
54
%GC
42.85
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004251266.1 NC_015159_p23 hypothetical protein phrog_10985 unknown function unknown function 1 13531 13734
YP_004251246.1 NC_015159_p3 hypothetical protein phrog_11474 unknown function unknown function 1 1067 1258
YP_004251281.1 NC_015159_p38 capsid assembly protein phrog_1052 head assembly head and packaging 1 20810 21670
YP_004251283.1 NC_015159_p40 tail tubular protein A phrog_446 tail protein tail 1 22979 23572
YP_004251273.1 NC_015159_p30 ssDNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 16092 16811
YP_004251252.1 NC_015159_p9 hypothetical protein phrog_11350 unknown function unknown function 1 5920 6246
YP_004251248.1 NC_015159_p5 hypothetical protein singleton unknown function unknown function 1 1720 1821
YP_004251249.1 NC_015159_p6 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 1849 4500
YP_004251247.1 NC_015159_p4 hypothetical protein phrog_13599 unknown function unknown function 1 1255 1455
YP_004251275.1 NC_015159_p32 lysozyme phrog_822 amidase lysis 1 17263 17697
YP_004251297.1 NC_015159_p54 hypothetical protein phrog_19284 unknown function unknown function 1 38680 38817
YP_004251244.1 NC_015159_p1 S-adenosyl-L-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other 1 515 946
YP_004251258.1 NC_015159_p15 hypothetical protein phrog_38837 unknown function unknown function 1 7794 7937
YP_004251254.1 NC_015159_p11 host RNA polymerase inhibitory protein phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 6983 7156
YP_004251278.1 NC_015159_p35 hypothetical protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18417 18824
YP_004251245.1 NC_015159_p2 hypothetical protein singleton unknown function unknown function 1 968 1045
YP_004251262.1 NC_015159_p19 hypothetical protein phrog_10688 unknown function unknown function 1 10414 10728
YP_004251294.1 NC_015159_p51 hypothetical protein singleton unknown function unknown function 1 36266 36358
YP_004251290.1 NC_015159_p47 tail fiber protein phrog_6256 tail fiber protein tail 1 33497 35236
YP_004251293.1 NC_015159_p50 DNA packaging/maturation protein A phrog_1351 terminase small subunit head and packaging 1 36012 36245
YP_004251253.1 NC_015159_p10 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 6258 6941
YP_004251276.1 NC_015159_p33 6.5 protein phrog_1447 unknown function unknown function 1 17833 18114
YP_004251289.1 NC_015159_p46 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 30034 33417
YP_004251259.1 NC_015159_p16 hypothetical protein phrog_5138 unknown function unknown function 1 7953 8348
YP_004251284.1 NC_015159_p41 tail tubular protein B phrog_457 tail protein tail 1 23584 25968
YP_004251263.1 NC_015159_p20 hypothetical protein phrog_10620 unknown function unknown function 1 10814 11272
YP_004251277.1 NC_015159_p34 hypothetical protein phrog_1391 unknown function unknown function 1 18130 18381
YP_004251292.1 NC_015159_p49 hypothetical protein phrog_12315 unknown function unknown function 1 35452 35895
YP_004251269.1 NC_015159_p26 hypothetical protein phrog_14683 unknown function unknown function 1 14388 14558
YP_004251287.1 NC_015159_p44 internal virion protein B phrog_805 internal virion protein head and packaging 1 27192 27776
YP_004251265.1 NC_015159_p22 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 11523 13559
YP_004251267.1 NC_015159_p24 hypothetical protein phrog_10513 unknown function unknown function 1 13864 14256
YP_004251256.1 NC_015159_p13 hypothetical protein singleton unknown function unknown function 1 7271 7456
YP_004251260.1 NC_015159_p17 hypothetical protein phrog_11152 unknown function unknown function 1 8453 8650
YP_004251264.1 NC_015159_p21 hypothetical protein phrog_10848 unknown function unknown function 1 11259 11516
YP_004251251.1 NC_015159_p8 hypothetical protein phrog_37734 unknown function unknown function 1 5673 5798
YP_004251279.1 NC_015159_p36 hypothetical protein phrog_10099 unknown function unknown function 1 18824 19114
YP_004251261.1 NC_015159_p18 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 8647 10353
YP_004251268.1 NC_015159_p25 hypothetical protein phrog_11673 unknown function unknown function 1 14234 14434
YP_004251285.1 NC_015159_p42 deoxyribonucleoside kinase phrog_761 thymidylate kinase other 1 26056 26688
YP_004251295.1 NC_015159_p52 hypothetical protein phrog_10167 unknown function unknown function 1 36407 36604
YP_004251286.1 NC_015159_p43 internal virion protein A phrog_308 internal virion protein head and packaging 1 26681 27199
YP_004251288.1 NC_015159_p45 internal virion protein C phrog_1339 internal virion protein head and packaging 1 27808 30021
YP_004251272.1 NC_015159_p29 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15173 16048
YP_004251280.1 NC_015159_p37 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 19132 20730
YP_004251274.1 NC_015159_p31 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 16811 17263
YP_004251291.1 NC_015159_p48 lysis protein phrog_920 holin lysis 1 35258 35452
YP_004251255.1 NC_015159_p12 hypothetical protein singleton unknown function unknown function 1 7153 7239
YP_004251250.1 NC_015159_p7 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 4696 5676
YP_004251257.1 NC_015159_p14 hypothetical protein phrog_10197 unknown function unknown function 1 7518 7778
YP_004251282.1 NC_015159_p39 major capsid protein phrog_267 major head protein head and packaging 1 21789 22913
YP_004251296.1 NC_015159_p53 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 36679 38439
YP_004251271.1 NC_015159_p28 hypothetical protein phrog_2294 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 14767 15180
YP_004251270.1 NC_015159_p27 5.7 kDa protein phrog_1334 unknown function unknown function 1 14570 14767