functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
NC_015269 |
Definition |
Enterobacteria phage SPC35, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Markadamsvirinae; Tequintavirus. |
DB of origin |
REFSEQ |
Length |
118351 |
Host Name |
Salmonella |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
145 |
%GC |
39.38 |
Number of singletons |
3 |
Number of paralogs |
3 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
YP_004306584.1 | NC_015269_p101 | D2 protein | phrog_3611 | helicase | DNA, RNA and nucleotide metabolism | 1 | 61332 | 62036 |
YP_004306615.1 | NC_015269_p132 | major tail protein | phrog_3575 | major tail protein | tail | -1 | 96590 | 97996 |
YP_004306486.1 | NC_015269_p3 | A1 protein | phrog_1745 | DNA transfer protein | other | -1 | 1400 | 3127 |
YP_004306580.1 | NC_015269_p97 | hypothetical protein | phrog_2502 | unknown function | unknown function | 1 | 57072 | 57464 |
YP_004306573.1 | NC_015269_p90 | anaerobic ribonucleoside-triphosphate reductase | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | 1 | 52692 | 54566 |
YP_004306588.1 | NC_015269_p105 | hypothetical protein | phrog_4053 | transcriptional regulator | transcription regulation | 1 | 63179 | 63487 |
YP_004306531.1 | NC_015269_p48 | hypothetical protein | phrog_5792 | unknown function | unknown function | -1 | 25226 | 25522 |
YP_004306581.1 | NC_015269_p98 | hypothetical protein | phrog_29527 | unknown function | unknown function | 1 | 57457 | 57651 |
YP_004306586.1 | NC_015269_p103 | D3 protein | phrog_1725 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 62384 | 62794 |
YP_004306485.1 | NC_015269_p2 | hypothetical protein | phrog_4576 | unknown function | unknown function | -1 | 939 | 1331 |
YP_004306488.1 | NC_015269_p5 | A2 protein | phrog_1725 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 3421 | 3828 |
YP_004306571.1 | NC_015269_p88 | aerobic ribonucleoside diphosphate reductase large subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | -1 | 48885 | 51215 |
YP_004306549.1 | NC_015269_p66 | hypothetical protein | phrog_7716 | unknown function | unknown function | -1 | 35037 | 35153 |
YP_004306608.1 | NC_015269_p125 | tail protein Pb4 | phrog_3890 | straight fibre tail protein | tail | -1 | 85464 | 87521 |
YP_004306551.1 | NC_015269_p68 | hypothetical protein | phrog_8119 | unknown function | unknown function | 1 | 36199 | 37188 |
YP_004306510.1 | NC_015269_p27 | hypothetical protein | phrog_4804 | unknown function | unknown function | -1 | 14852 | 15097 |
YP_004306509.1 | NC_015269_p26 | hypothetical protein | phrog_4731 | unknown function | unknown function | -1 | 14536 | 14862 |
YP_004306491.1 | NC_015269_p8 | hypothetical protein | phrog_17446 | unknown function | unknown function | -1 | 4714 | 4899 |
YP_004306554.1 | NC_015269_p71 | hypothetical protein | phrog_1460 | tRNA amidotransferase | DNA, RNA and nucleotide metabolism | -1 | 39845 | 40288 |
YP_004306545.1 | NC_015269_p62 | hypothetical protein | phrog_8408 | unknown function | unknown function | -1 | 33378 | 33602 |
YP_004306614.1 | NC_015269_p131 | minor tail protein | phrog_3889 | base plate tail tube protein | tail | -1 | 95686 | 96585 |
YP_004306537.1 | NC_015269_p54 | acetyltransferase-related protein | phrog_1209 | unknown function | unknown function | -1 | 27376 | 27744 |
YP_004306624.1 | NC_015269_p141 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 104135 | 105451 |
YP_004306497.1 | NC_015269_p14 | hypothetical protein | phrog_4379 | unknown function | unknown function | 1 | 7716 | 8060 |
YP_004306613.1 | NC_015269_p130 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | -1 | 95285 | 95689 |
YP_004306513.1 | NC_015269_p30 | hypothetical protein | phrog_3880 | unknown function | unknown function | -1 | 15536 | 15787 |
YP_004306601.1 | NC_015269_p118 | exonuclease subunit 2 | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 75644 | 77482 |
YP_004306564.1 | NC_015269_p81 | hypothetical protein | phrog_4593 | unknown function | unknown function | -1 | 44574 | 44852 |
YP_004306541.1 | NC_015269_p58 | hypothetical protein | phrog_6073 | Rz-like spanin | lysis | -1 | 31491 | 31688 |
YP_004306558.1 | NC_015269_p75 | hypothetical protein | phrog_1491 | tail fiber protein | tail | -1 | 41742 | 42380 |
YP_004306546.1 | NC_015269_p63 | hypothetical protein | phrog_5876 | unknown function | unknown function | -1 | 33653 | 33925 |
YP_004306522.1 | NC_015269_p39 | lysozyme | phrog_465 | endolysin | lysis | -1 | 19850 | 20263 |
YP_004306526.1 | NC_015269_p43 | hypothetical protein | phrog_739 | Rz-like spanin | lysis | -1 | 22718 | 23161 |
YP_004306566.1 | NC_015269_p83 | hypothetical protein | phrog_5321 | unknown function | unknown function | -1 | 45405 | 45686 |
YP_004306602.1 | NC_015269_p119 | D14 protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 77486 | 77968 |
YP_004306538.1 | NC_015269_p55 | hypothetical protein | phrog_4760 | unknown function | unknown function | -1 | 28224 | 28517 |
YP_004306552.1 | NC_015269_p69 | hypothetical protein | phrog_7894 | unknown function | unknown function | 1 | 37210 | 37629 |
YP_004306560.1 | NC_015269_p77 | metallopeptidase | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42686 | 43387 |
YP_004306530.1 | NC_015269_p47 | hypothetical protein | phrog_5265 | unknown function | unknown function | -1 | 24945 | 25229 |
YP_004306536.1 | NC_015269_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27007 | 27078 |
YP_004306569.1 | NC_015269_p86 | aerobic ribonucleoside diphosphate reductase small subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | -1 | 47164 | 48309 |
YP_004306543.1 | NC_015269_p60 | hypothetical protein | phrog_19286 | unknown function | unknown function | -1 | 32593 | 32751 |
YP_004306520.1 | NC_015269_p37 | hypothetical protein | phrog_4328 | unknown function | unknown function | -1 | 18849 | 19280 |
YP_004306565.1 | NC_015269_p82 | ribonuclease H | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 44929 | 45405 |
YP_004306550.1 | NC_015269_p67 | hypothetical protein | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 35414 | 35932 |
YP_004306572.1 | NC_015269_p89 | phosphate starvation-inducible protein | phrog_170 | PhoH-like phosphate starvation-inducible | other | -1 | 51581 | 52333 |
YP_004306593.1 | NC_015269_p110 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 66499 | 68022 |
YP_004306496.1 | NC_015269_p13 | hypothetical protein | phrog_19184 | unknown function | unknown function | 1 | 7589 | 7714 |
YP_004306500.1 | NC_015269_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10962 | 11450 |
YP_004306547.1 | NC_015269_p64 | hypothetical protein | phrog_4551 | unknown function | unknown function | -1 | 34472 | 34747 |
YP_004306553.1 | NC_015269_p70 | hypothetical protein | phrog_200 | lipoprotein | other | -1 | 37954 | 38901 |
YP_004306622.1 | NC_015269_p139 | portal protein | phrog_12 | portal protein | head and packaging | -1 | 102366 | 103583 |
YP_004306585.1 | NC_015269_p102 | hypothetical protein | phrog_643 | transcriptional regulator | transcription regulation | 1 | 62047 | 62280 |
YP_004306606.1 | NC_015269_p123 | hypothetical protein | phrog_5481 | tail fiber protein | tail | -1 | 81687 | 85037 |
YP_004306517.1 | NC_015269_p34 | hypothetical protein | phrog_7354 | major head protein | head and packaging | -1 | 17840 | 18085 |
YP_004306556.1 | NC_015269_p73 | spore cortex-lytic enzyme precursor | phrog_938 | endolysin | lysis | -1 | 40527 | 40976 |
YP_004306512.1 | NC_015269_p29 | hypothetical protein | phrog_23542 | unknown function | unknown function | -1 | 15375 | 15536 |
YP_004306498.1 | NC_015269_p15 | hypothetical protein | phrog_6973 | unknown function | unknown function | 1 | 8334 | 8528 |
YP_004306576.1 | NC_015269_p93 | hypothetical protein | phrog_5827 | unknown function | unknown function | 1 | 55129 | 55323 |
YP_004306489.1 | NC_015269_p6 | hypothetical protein | phrog_3747 | unknown function | unknown function | -1 | 3927 | 4178 |
YP_004306506.1 | NC_015269_p23 | hypothetical protein | phrog_4905 | unknown function | unknown function | -1 | 13459 | 13797 |
YP_004306507.1 | NC_015269_p24 | hypothetical protein | phrog_4215 | unknown function | unknown function | -1 | 13778 | 14239 |
YP_004306623.1 | NC_015269_p140 | hypothetical protein | phrog_3497 | unknown function | unknown function | -1 | 103583 | 104020 |
YP_004306493.1 | NC_015269_p10 | hypothetical protein | phrog_5145 | unknown function | unknown function | 1 | 6917 | 7147 |
YP_004306610.1 | NC_015269_p127 | hypothetical protein | phrog_1302 | distal tail protein | tail | -1 | 90367 | 90981 |
YP_004306492.1 | NC_015269_p9 | hypothetical protein | phrog_4263 | unknown function | unknown function | 1 | 5812 | 6801 |
YP_004306616.1 | NC_015269_p133 | hypothetical protein | phrog_3907 | tail terminator | connector | -1 | 98023 | 98508 |
YP_004306555.1 | NC_015269_p72 | hypothetical protein | phrog_5077 | unknown function | unknown function | -1 | 40288 | 40458 |
YP_004306609.1 | NC_015269_p126 | tail protein Pb3 | phrog_31 | central tail fiber J | tail | -1 | 87521 | 90370 |
YP_004306559.1 | NC_015269_p76 | hypothetical protein | phrog_5252 | unknown function | unknown function | -1 | 42433 | 42615 |
YP_004306587.1 | NC_015269_p104 | hypothetical protein | phrog_3696 | unknown function | unknown function | 1 | 62832 | 63128 |
YP_004306594.1 | NC_015269_p111 | DNA replication primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 68019 | 68909 |
YP_004306595.1 | NC_015269_p112 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 68972 | 71539 |
YP_004306525.1 | NC_015269_p42 | deoxynucleoside-5'-monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 21682 | 22434 |
YP_004306619.1 | NC_015269_p136 | major head protein precursor | phrog_10 | major head protein | head and packaging | -1 | 99851 | 101227 |
YP_004306539.1 | NC_015269_p56 | hypothetical protein | phrog_5919 | unknown function | unknown function | -1 | 28676 | 28840 |
YP_004306628.1 | NC_015269_p145 | hypothetical protein | phrog_6447 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 108492 | 108737 |
YP_004306591.1 | NC_015269_p108 | NAD-dependent DNA ligase subunit B | phrog_3498 | NAD-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 64928 | 65707 |
YP_004306618.1 | NC_015269_p135 | hypothetical protein | phrog_442 | head-tail adaptor | connector | -1 | 99279 | 99791 |
YP_004306527.1 | NC_015269_p44 | H-N-H-endonuclease F-TflVI | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23161 | 23658 |
YP_004306516.1 | NC_015269_p33 | serine/threonine protein phosphatase | phrog_246 | NinI-like serine-threonine phosphatase | other | -1 | 16986 | 17837 |
YP_004306600.1 | NC_015269_p117 | recombination endonuclease subunit D12 | phrog_100 | SbcD-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 74686 | 75663 |
YP_004306533.1 | NC_015269_p50 | hypothetical protein | phrog_4821 | unknown function | unknown function | -1 | 25888 | 26187 |
YP_004306574.1 | NC_015269_p91 | hypothetical protein | phrog_7953 | unknown function | unknown function | 1 | 54666 | 54947 |
YP_004306484.1 | NC_015269_p1 | deoxynucleoside-5'-monophosphatase | phrog_415 | polynucleotide kinase | other | -1 | 124 | 900 |
YP_004306495.1 | NC_015269_p12 | hypothetical protein | phrog_4227 | endonuclease nicking abasic sites generated by host uracil glycosylase Ung | moron, auxiliary metabolic gene and host takeover | 1 | 7380 | 7592 |
YP_004306611.1 | NC_015269_p128 | pore-forming tail tip protein | phrog_3779 | tail length tape measure protein | tail | -1 | 91091 | 94771 |
YP_004306621.1 | NC_015269_p138 | tail protein | phrog_2973 | Hoc-like head decoration | head and packaging | -1 | 101881 | 102369 |
YP_004306567.1 | NC_015269_p84 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 45780 | 46634 |
YP_004306627.1 | NC_015269_p144 | receptor-blocking protein | phrog_1119 | Cor superinfection exclusion protein | moron, auxiliary metabolic gene and host takeover | 1 | 107817 | 108083 |
YP_004306557.1 | NC_015269_p74 | hypothetical protein | phrog_1479 | unknown function | unknown function | -1 | 40982 | 41299 |
YP_004306578.1 | NC_015269_p95 | hypothetical protein | phrog_1818 | unknown function | unknown function | 1 | 56119 | 56631 |
YP_004306582.1 | NC_015269_p99 | replication origin binding protein | phrog_3712 | replication origin binding | DNA, RNA and nucleotide metabolism | 1 | 58057 | 61044 |
YP_004306523.1 | NC_015269_p40 | holin | phrog_860 | holin | lysis | -1 | 20260 | 20916 |
YP_004306504.1 | NC_015269_p21 | hypothetical protein | phrog_4605 | unknown function | unknown function | -1 | 12753 | 13199 |
YP_004306511.1 | NC_015269_p28 | hypothetical protein | phrog_4984 | unknown function | unknown function | -1 | 15094 | 15375 |
YP_004306625.1 | NC_015269_p142 | SciB protein | phrog_3802 | terminase small subunit | head and packaging | -1 | 105451 | 105933 |
YP_004306528.1 | NC_015269_p45 | hypothetical protein | phrog_4243 | unknown function | unknown function | -1 | 23655 | 24335 |
YP_004306568.1 | NC_015269_p85 | dihydrofolate reductase | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 46634 | 47167 |
YP_004306605.1 | NC_015269_p122 | hypothetical protein | phrog_12321 | tail fiber protein | tail | -1 | 79556 | 81643 |
YP_004306519.1 | NC_015269_p36 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 18566 | 18856 |
YP_004306501.1 | NC_015269_p18 | hypothetical protein | phrog_5271 | unknown function | unknown function | -1 | 11450 | 12064 |
YP_004306597.1 | NC_015269_p114 | ATP-dependent helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 72026 | 73378 |
YP_004306544.1 | NC_015269_p61 | hypothetical protein | phrog_5473 | unknown function | unknown function | -1 | 32855 | 33040 |
YP_004306599.1 | NC_015269_p116 | D11 protein | phrog_1607 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 73876 | 74649 |
YP_004306603.1 | NC_015269_p120 | flap endonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 77968 | 78843 |
YP_004306612.1 | NC_015269_p129 | hypothetical protein | phrog_3914 | tail assembly chaperone | tail | -1 | 94855 | 95223 |
YP_004306626.1 | NC_015269_p143 | receptor-binding protein | phrog_4815 | receptor binding tail protein | tail | -1 | 105944 | 107731 |
YP_004306620.1 | NC_015269_p137 | prohead protease | phrog_80 | head maturation protease | head and packaging | -1 | 101245 | 101877 |
YP_004306570.1 | NC_015269_p87 | H-N-H-endonuclease P-TflVIII | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 48306 | 48803 |
YP_004306502.1 | NC_015269_p19 | hypothetical protein | phrog_5799 | unknown function | unknown function | -1 | 12064 | 12249 |
YP_004306589.1 | NC_015269_p106 | hypothetical protein | phrog_8267 | unknown function | unknown function | 1 | 63573 | 63761 |
YP_004306529.1 | NC_015269_p46 | hypothetical protein | phrog_5468 | unknown function | unknown function | -1 | 24490 | 24834 |
YP_004306592.1 | NC_015269_p109 | D5 protein | phrog_323 | transcriptional regulator, D5-like | transcription regulation | 1 | 65700 | 66467 |
YP_004306490.1 | NC_015269_p7 | hypothetical protein | phrog_4718 | unknown function | unknown function | -1 | 4409 | 4612 |
YP_004306532.1 | NC_015269_p49 | hypothetical protein | phrog_5486 | unknown function | unknown function | -1 | 25500 | 25895 |
YP_004306607.1 | NC_015269_p124 | phage tail protein | phrog_1084 | unknown function | unknown function | -1 | 85037 | 85459 |
YP_004306508.1 | NC_015269_p25 | hypothetical protein | phrog_5967 | unknown function | unknown function | -1 | 14236 | 14436 |
YP_004306487.1 | NC_015269_p4 | A1 protein precursor | phrog_4820 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 3168 | 3365 |
YP_004306515.1 | NC_015269_p32 | serine/threonine protein phosphatase | phrog_547 | phosphoesterase | other | -1 | 16465 | 16986 |
YP_004306577.1 | NC_015269_p94 | Sir2-like protein | phrog_2162 | Sir2 (NAD-dependent deacetylase) | DNA, RNA and nucleotide metabolism | 1 | 55323 | 56138 |
YP_004306542.1 | NC_015269_p59 | hypothetical protein | phrog_3972 | unknown function | unknown function | -1 | 32142 | 32489 |
YP_004306575.1 | NC_015269_p92 | hypothetical protein | phrog_5236 | unknown function | unknown function | 1 | 54957 | 55160 |
YP_004306604.1 | NC_015269_p121 | deoxyUTP pyrophosphatase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 78840 | 79286 |
YP_004306579.1 | NC_015269_p96 | hypothetical protein | phrog_2502 | unknown function | unknown function | 1 | 56634 | 57062 |
YP_004306499.1 | NC_015269_p16 | hypothetical protein | phrog_8993 | unknown function | unknown function | -1 | 10240 | 10965 |
YP_004306503.1 | NC_015269_p20 | hypothetical protein | phrog_6021 | unknown function | unknown function | -1 | 12249 | 12482 |
YP_004306561.1 | NC_015269_p78 | hypothetical protein | phrog_4586 | unknown function | unknown function | -1 | 43416 | 43652 |
YP_004306583.1 | NC_015269_p100 | hypothetical protein | phrog_5291 | unknown function | unknown function | 1 | 61028 | 61261 |
YP_004306598.1 | NC_015269_p115 | hypothetical protein | phrog_4258 | unknown function | unknown function | 1 | 73599 | 73883 |
YP_004306514.1 | NC_015269_p31 | hypothetical protein | phrog_4979 | unknown function | unknown function | -1 | 15866 | 16297 |
YP_004306617.1 | NC_015269_p134 | hypothetical protein | phrog_3725 | tail completion or Neck1 protein | connector | -1 | 98512 | 99279 |
YP_004306524.1 | NC_015269_p41 | ATP-dependent Clp protease | phrog_1827 | ATP-dependent protease | other | -1 | 21088 | 21669 |
YP_004306596.1 | NC_015269_p113 | hypothetical protein | phrog_4386 | unknown function | unknown function | 1 | 71532 | 72029 |
YP_004306518.1 | NC_015269_p35 | hypothetical protein | phrog_6798 | unknown function | unknown function | -1 | 18090 | 18467 |
YP_004306521.1 | NC_015269_p38 | hypothetical protein | phrog_5944 | unknown function | unknown function | -1 | 19356 | 19772 |
YP_004306562.1 | NC_015269_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43694 | 43849 |
YP_004306505.1 | NC_015269_p22 | hypothetical protein | phrog_6933 | unknown function | unknown function | -1 | 13201 | 13404 |
YP_004306540.1 | NC_015269_p57 | hypothetical protein | phrog_5598 | unknown function | unknown function | -1 | 28833 | 29084 |
YP_004306590.1 | NC_015269_p107 | NAD-dependent DNA ligase subunit A | phrog_3359 | NAD-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 63754 | 64725 |
YP_004306494.1 | NC_015269_p11 | hypothetical protein | phrog_5607 | unknown function | unknown function | 1 | 7198 | 7377 |
YP_004306535.1 | NC_015269_p52 | hypothetical protein | phrog_5021 | unknown function | unknown function | -1 | 26538 | 26885 |
YP_004306548.1 | NC_015269_p65 | hypothetical protein | phrog_5153 | unknown function | unknown function | -1 | 34838 | 35044 |
YP_004306534.1 | NC_015269_p51 | hypothetical protein | phrog_2855 | unknown function | unknown function | -1 | 26180 | 26401 |
YP_004306563.1 | NC_015269_p80 | hypothetical protein | phrog_4516 | unknown function | unknown function | -1 | 43975 | 44490 |