Genomic map of Salmonella virus SPC35 (NC_015269)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_015269
Definition
Enterobacteria phage SPC35, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Markadamsvirinae; Tequintavirus.
DB of origin
REFSEQ
Length
118351
Host Name
Salmonella
Host domain
Bacteria
Is prophage?
undef
Number of proteins
145
%GC
39.38
Number of singletons
3
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004306584.1 NC_015269_p101 D2 protein phrog_3611 helicase DNA, RNA and nucleotide metabolism 1 61332 62036
YP_004306615.1 NC_015269_p132 major tail protein phrog_3575 major tail protein tail -1 96590 97996
YP_004306486.1 NC_015269_p3 A1 protein phrog_1745 DNA transfer protein other -1 1400 3127
YP_004306580.1 NC_015269_p97 hypothetical protein phrog_2502 unknown function unknown function 1 57072 57464
YP_004306573.1 NC_015269_p90 anaerobic ribonucleoside-triphosphate reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 52692 54566
YP_004306588.1 NC_015269_p105 hypothetical protein phrog_4053 transcriptional regulator transcription regulation 1 63179 63487
YP_004306531.1 NC_015269_p48 hypothetical protein phrog_5792 unknown function unknown function -1 25226 25522
YP_004306581.1 NC_015269_p98 hypothetical protein phrog_29527 unknown function unknown function 1 57457 57651
YP_004306586.1 NC_015269_p103 D3 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism 1 62384 62794
YP_004306485.1 NC_015269_p2 hypothetical protein phrog_4576 unknown function unknown function -1 939 1331
YP_004306488.1 NC_015269_p5 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 3421 3828
YP_004306571.1 NC_015269_p88 aerobic ribonucleoside diphosphate reductase large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 48885 51215
YP_004306549.1 NC_015269_p66 hypothetical protein phrog_7716 unknown function unknown function -1 35037 35153
YP_004306608.1 NC_015269_p125 tail protein Pb4 phrog_3890 straight fibre tail protein tail -1 85464 87521
YP_004306551.1 NC_015269_p68 hypothetical protein phrog_8119 unknown function unknown function 1 36199 37188
YP_004306510.1 NC_015269_p27 hypothetical protein phrog_4804 unknown function unknown function -1 14852 15097
YP_004306509.1 NC_015269_p26 hypothetical protein phrog_4731 unknown function unknown function -1 14536 14862
YP_004306491.1 NC_015269_p8 hypothetical protein phrog_17446 unknown function unknown function -1 4714 4899
YP_004306554.1 NC_015269_p71 hypothetical protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism -1 39845 40288
YP_004306545.1 NC_015269_p62 hypothetical protein phrog_8408 unknown function unknown function -1 33378 33602
YP_004306614.1 NC_015269_p131 minor tail protein phrog_3889 base plate tail tube protein tail -1 95686 96585
YP_004306537.1 NC_015269_p54 acetyltransferase-related protein phrog_1209 unknown function unknown function -1 27376 27744
YP_004306624.1 NC_015269_p141 terminase large subunit phrog_2 terminase large subunit head and packaging -1 104135 105451
YP_004306497.1 NC_015269_p14 hypothetical protein phrog_4379 unknown function unknown function 1 7716 8060
YP_004306613.1 NC_015269_p130 hypothetical protein phrog_313 Tail assembly chaperone tail -1 95285 95689
YP_004306513.1 NC_015269_p30 hypothetical protein phrog_3880 unknown function unknown function -1 15536 15787
YP_004306601.1 NC_015269_p118 exonuclease subunit 2 phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 75644 77482
YP_004306564.1 NC_015269_p81 hypothetical protein phrog_4593 unknown function unknown function -1 44574 44852
YP_004306541.1 NC_015269_p58 hypothetical protein phrog_6073 Rz-like spanin lysis -1 31491 31688
YP_004306558.1 NC_015269_p75 hypothetical protein phrog_1491 tail fiber protein tail -1 41742 42380
YP_004306546.1 NC_015269_p63 hypothetical protein phrog_5876 unknown function unknown function -1 33653 33925
YP_004306522.1 NC_015269_p39 lysozyme phrog_465 endolysin lysis -1 19850 20263
YP_004306526.1 NC_015269_p43 hypothetical protein phrog_739 Rz-like spanin lysis -1 22718 23161
YP_004306566.1 NC_015269_p83 hypothetical protein phrog_5321 unknown function unknown function -1 45405 45686
YP_004306602.1 NC_015269_p119 D14 protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 77486 77968
YP_004306538.1 NC_015269_p55 hypothetical protein phrog_4760 unknown function unknown function -1 28224 28517
YP_004306552.1 NC_015269_p69 hypothetical protein phrog_7894 unknown function unknown function 1 37210 37629
YP_004306560.1 NC_015269_p77 metallopeptidase phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 42686 43387
YP_004306530.1 NC_015269_p47 hypothetical protein phrog_5265 unknown function unknown function -1 24945 25229
YP_004306536.1 NC_015269_p53 hypothetical protein singleton unknown function unknown function -1 27007 27078
YP_004306569.1 NC_015269_p86 aerobic ribonucleoside diphosphate reductase small subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 47164 48309
YP_004306543.1 NC_015269_p60 hypothetical protein phrog_19286 unknown function unknown function -1 32593 32751
YP_004306520.1 NC_015269_p37 hypothetical protein phrog_4328 unknown function unknown function -1 18849 19280
YP_004306565.1 NC_015269_p82 ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 44929 45405
YP_004306550.1 NC_015269_p67 hypothetical protein phrog_849 DNA primase DNA, RNA and nucleotide metabolism -1 35414 35932
YP_004306572.1 NC_015269_p89 phosphate starvation-inducible protein phrog_170 PhoH-like phosphate starvation-inducible other -1 51581 52333
YP_004306593.1 NC_015269_p110 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 66499 68022
YP_004306496.1 NC_015269_p13 hypothetical protein phrog_19184 unknown function unknown function 1 7589 7714
YP_004306500.1 NC_015269_p17 hypothetical protein singleton unknown function unknown function -1 10962 11450
YP_004306547.1 NC_015269_p64 hypothetical protein phrog_4551 unknown function unknown function -1 34472 34747
YP_004306553.1 NC_015269_p70 hypothetical protein phrog_200 lipoprotein other -1 37954 38901
YP_004306622.1 NC_015269_p139 portal protein phrog_12 portal protein head and packaging -1 102366 103583
YP_004306585.1 NC_015269_p102 hypothetical protein phrog_643 transcriptional regulator transcription regulation 1 62047 62280
YP_004306606.1 NC_015269_p123 hypothetical protein phrog_5481 tail fiber protein tail -1 81687 85037
YP_004306517.1 NC_015269_p34 hypothetical protein phrog_7354 major head protein head and packaging -1 17840 18085
YP_004306556.1 NC_015269_p73 spore cortex-lytic enzyme precursor phrog_938 endolysin lysis -1 40527 40976
YP_004306512.1 NC_015269_p29 hypothetical protein phrog_23542 unknown function unknown function -1 15375 15536
YP_004306498.1 NC_015269_p15 hypothetical protein phrog_6973 unknown function unknown function 1 8334 8528
YP_004306576.1 NC_015269_p93 hypothetical protein phrog_5827 unknown function unknown function 1 55129 55323
YP_004306489.1 NC_015269_p6 hypothetical protein phrog_3747 unknown function unknown function -1 3927 4178
YP_004306506.1 NC_015269_p23 hypothetical protein phrog_4905 unknown function unknown function -1 13459 13797
YP_004306507.1 NC_015269_p24 hypothetical protein phrog_4215 unknown function unknown function -1 13778 14239
YP_004306623.1 NC_015269_p140 hypothetical protein phrog_3497 unknown function unknown function -1 103583 104020
YP_004306493.1 NC_015269_p10 hypothetical protein phrog_5145 unknown function unknown function 1 6917 7147
YP_004306610.1 NC_015269_p127 hypothetical protein phrog_1302 distal tail protein tail -1 90367 90981
YP_004306492.1 NC_015269_p9 hypothetical protein phrog_4263 unknown function unknown function 1 5812 6801
YP_004306616.1 NC_015269_p133 hypothetical protein phrog_3907 tail terminator connector -1 98023 98508
YP_004306555.1 NC_015269_p72 hypothetical protein phrog_5077 unknown function unknown function -1 40288 40458
YP_004306609.1 NC_015269_p126 tail protein Pb3 phrog_31 central tail fiber J tail -1 87521 90370
YP_004306559.1 NC_015269_p76 hypothetical protein phrog_5252 unknown function unknown function -1 42433 42615
YP_004306587.1 NC_015269_p104 hypothetical protein phrog_3696 unknown function unknown function 1 62832 63128
YP_004306594.1 NC_015269_p111 DNA replication primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 68019 68909
YP_004306595.1 NC_015269_p112 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 68972 71539
YP_004306525.1 NC_015269_p42 deoxynucleoside-5'-monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other -1 21682 22434
YP_004306619.1 NC_015269_p136 major head protein precursor phrog_10 major head protein head and packaging -1 99851 101227
YP_004306539.1 NC_015269_p56 hypothetical protein phrog_5919 unknown function unknown function -1 28676 28840
YP_004306628.1 NC_015269_p145 hypothetical protein phrog_6447 membrane protein moron, auxiliary metabolic gene and host takeover 1 108492 108737
YP_004306591.1 NC_015269_p108 NAD-dependent DNA ligase subunit B phrog_3498 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 64928 65707
YP_004306618.1 NC_015269_p135 hypothetical protein phrog_442 head-tail adaptor connector -1 99279 99791
YP_004306527.1 NC_015269_p44 H-N-H-endonuclease F-TflVI phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 23161 23658
YP_004306516.1 NC_015269_p33 serine/threonine protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other -1 16986 17837
YP_004306600.1 NC_015269_p117 recombination endonuclease subunit D12 phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 74686 75663
YP_004306533.1 NC_015269_p50 hypothetical protein phrog_4821 unknown function unknown function -1 25888 26187
YP_004306574.1 NC_015269_p91 hypothetical protein phrog_7953 unknown function unknown function 1 54666 54947
YP_004306484.1 NC_015269_p1 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other -1 124 900
YP_004306495.1 NC_015269_p12 hypothetical protein phrog_4227 endonuclease nicking abasic sites generated by host uracil glycosylase Ung moron, auxiliary metabolic gene and host takeover 1 7380 7592
YP_004306611.1 NC_015269_p128 pore-forming tail tip protein phrog_3779 tail length tape measure protein tail -1 91091 94771
YP_004306621.1 NC_015269_p138 tail protein phrog_2973 Hoc-like head decoration head and packaging -1 101881 102369
YP_004306567.1 NC_015269_p84 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 45780 46634
YP_004306627.1 NC_015269_p144 receptor-blocking protein phrog_1119 Cor superinfection exclusion protein moron, auxiliary metabolic gene and host takeover 1 107817 108083
YP_004306557.1 NC_015269_p74 hypothetical protein phrog_1479 unknown function unknown function -1 40982 41299
YP_004306578.1 NC_015269_p95 hypothetical protein phrog_1818 unknown function unknown function 1 56119 56631
YP_004306582.1 NC_015269_p99 replication origin binding protein phrog_3712 replication origin binding DNA, RNA and nucleotide metabolism 1 58057 61044
YP_004306523.1 NC_015269_p40 holin phrog_860 holin lysis -1 20260 20916
YP_004306504.1 NC_015269_p21 hypothetical protein phrog_4605 unknown function unknown function -1 12753 13199
YP_004306511.1 NC_015269_p28 hypothetical protein phrog_4984 unknown function unknown function -1 15094 15375
YP_004306625.1 NC_015269_p142 SciB protein phrog_3802 terminase small subunit head and packaging -1 105451 105933
YP_004306528.1 NC_015269_p45 hypothetical protein phrog_4243 unknown function unknown function -1 23655 24335
YP_004306568.1 NC_015269_p85 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 46634 47167
YP_004306605.1 NC_015269_p122 hypothetical protein phrog_12321 tail fiber protein tail -1 79556 81643
YP_004306519.1 NC_015269_p36 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 18566 18856
YP_004306501.1 NC_015269_p18 hypothetical protein phrog_5271 unknown function unknown function -1 11450 12064
YP_004306597.1 NC_015269_p114 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 72026 73378
YP_004306544.1 NC_015269_p61 hypothetical protein phrog_5473 unknown function unknown function -1 32855 33040
YP_004306599.1 NC_015269_p116 D11 protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 73876 74649
YP_004306603.1 NC_015269_p120 flap endonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 77968 78843
YP_004306612.1 NC_015269_p129 hypothetical protein phrog_3914 tail assembly chaperone tail -1 94855 95223
YP_004306626.1 NC_015269_p143 receptor-binding protein phrog_4815 receptor binding tail protein tail -1 105944 107731
YP_004306620.1 NC_015269_p137 prohead protease phrog_80 head maturation protease head and packaging -1 101245 101877
YP_004306570.1 NC_015269_p87 H-N-H-endonuclease P-TflVIII phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 48306 48803
YP_004306502.1 NC_015269_p19 hypothetical protein phrog_5799 unknown function unknown function -1 12064 12249
YP_004306589.1 NC_015269_p106 hypothetical protein phrog_8267 unknown function unknown function 1 63573 63761
YP_004306529.1 NC_015269_p46 hypothetical protein phrog_5468 unknown function unknown function -1 24490 24834
YP_004306592.1 NC_015269_p109 D5 protein phrog_323 transcriptional regulator, D5-like transcription regulation 1 65700 66467
YP_004306490.1 NC_015269_p7 hypothetical protein phrog_4718 unknown function unknown function -1 4409 4612
YP_004306532.1 NC_015269_p49 hypothetical protein phrog_5486 unknown function unknown function -1 25500 25895
YP_004306607.1 NC_015269_p124 phage tail protein phrog_1084 unknown function unknown function -1 85037 85459
YP_004306508.1 NC_015269_p25 hypothetical protein phrog_5967 unknown function unknown function -1 14236 14436
YP_004306487.1 NC_015269_p4 A1 protein precursor phrog_4820 membrane protein moron, auxiliary metabolic gene and host takeover -1 3168 3365
YP_004306515.1 NC_015269_p32 serine/threonine protein phosphatase phrog_547 phosphoesterase other -1 16465 16986
YP_004306577.1 NC_015269_p94 Sir2-like protein phrog_2162 Sir2 (NAD-dependent deacetylase) DNA, RNA and nucleotide metabolism 1 55323 56138
YP_004306542.1 NC_015269_p59 hypothetical protein phrog_3972 unknown function unknown function -1 32142 32489
YP_004306575.1 NC_015269_p92 hypothetical protein phrog_5236 unknown function unknown function 1 54957 55160
YP_004306604.1 NC_015269_p121 deoxyUTP pyrophosphatase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 78840 79286
YP_004306579.1 NC_015269_p96 hypothetical protein phrog_2502 unknown function unknown function 1 56634 57062
YP_004306499.1 NC_015269_p16 hypothetical protein phrog_8993 unknown function unknown function -1 10240 10965
YP_004306503.1 NC_015269_p20 hypothetical protein phrog_6021 unknown function unknown function -1 12249 12482
YP_004306561.1 NC_015269_p78 hypothetical protein phrog_4586 unknown function unknown function -1 43416 43652
YP_004306583.1 NC_015269_p100 hypothetical protein phrog_5291 unknown function unknown function 1 61028 61261
YP_004306598.1 NC_015269_p115 hypothetical protein phrog_4258 unknown function unknown function 1 73599 73883
YP_004306514.1 NC_015269_p31 hypothetical protein phrog_4979 unknown function unknown function -1 15866 16297
YP_004306617.1 NC_015269_p134 hypothetical protein phrog_3725 tail completion or Neck1 protein connector -1 98512 99279
YP_004306524.1 NC_015269_p41 ATP-dependent Clp protease phrog_1827 ATP-dependent protease other -1 21088 21669
YP_004306596.1 NC_015269_p113 hypothetical protein phrog_4386 unknown function unknown function 1 71532 72029
YP_004306518.1 NC_015269_p35 hypothetical protein phrog_6798 unknown function unknown function -1 18090 18467
YP_004306521.1 NC_015269_p38 hypothetical protein phrog_5944 unknown function unknown function -1 19356 19772
YP_004306562.1 NC_015269_p79 hypothetical protein singleton unknown function unknown function -1 43694 43849
YP_004306505.1 NC_015269_p22 hypothetical protein phrog_6933 unknown function unknown function -1 13201 13404
YP_004306540.1 NC_015269_p57 hypothetical protein phrog_5598 unknown function unknown function -1 28833 29084
YP_004306590.1 NC_015269_p107 NAD-dependent DNA ligase subunit A phrog_3359 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 63754 64725
YP_004306494.1 NC_015269_p11 hypothetical protein phrog_5607 unknown function unknown function 1 7198 7377
YP_004306535.1 NC_015269_p52 hypothetical protein phrog_5021 unknown function unknown function -1 26538 26885
YP_004306548.1 NC_015269_p65 hypothetical protein phrog_5153 unknown function unknown function -1 34838 35044
YP_004306534.1 NC_015269_p51 hypothetical protein phrog_2855 unknown function unknown function -1 26180 26401
YP_004306563.1 NC_015269_p80 hypothetical protein phrog_4516 unknown function unknown function -1 43975 44490