Genomic map of Salmonella phage Vi06 (NC_015271)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_015271
Definition
Salmonella phage Vi06 complete sequence.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teseptimavirus; Salmonella virus Vi06.
DB of origin
REFSEQ
Length
38368
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
47
%GC
48.92
Number of singletons
4
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004306670.1 NC_015271_p19 hypothetical protein phrog_1950 unknown function unknown function 1 10693 10905
YP_004306687.1 NC_015271_p36 predicted internal virion protein A phrog_308 internal virion protein head and packaging 1 24168 24584
YP_004306695.1 NC_015271_p44 hypothetical protein phrog_4306 Rz-like spanin lysis 1 34206 34457
YP_004306656.1 NC_015271_p5 hypothetical protein phrog_2490 unknown function unknown function 1 4461 4589
YP_004306677.1 NC_015271_p26 hypothetical protein phrog_1447 unknown function unknown function 1 15889 16143
YP_004306653.1 NC_015271_p2 hypothetical protein singleton unknown function unknown function 1 543 1076
YP_004306664.1 NC_015271_p13 predicted single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7233 7937
YP_004306683.1 NC_015271_p32 predicted minor capsid protein phrog_267 major head protein head and packaging 1 19829 20872
YP_004306683.1 NC_015271_p32 predicted minor capsid protein phrog_267 major head protein head and packaging 1 20869 21015
YP_004306698.1 NC_015271_p47 hypothetical protein phrog_2193 unknown function unknown function 1 37814 37963
YP_004306658.1 NC_015271_p7 predicted DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 4981 6003
YP_004306671.1 NC_015271_p20 hypothetical protein phrog_2254 unknown function unknown function 1 10924 11193
YP_004306678.1 NC_015271_p27 hypothetical protein phrog_1391 unknown function unknown function 1 16148 16414
YP_004306692.1 NC_015271_p41 predicted lysis protein phrog_920 holin lysis 1 33514 33726
YP_004306679.1 NC_015271_p28 host specificity protein A phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 16414 16815
YP_004306666.1 NC_015271_p15 predicted N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis 1 8463 8918
YP_004306680.1 NC_015271_p29 host specificity protein B phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 16820 17092
YP_004306665.1 NC_015271_p14 predicted endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 8014 8463
YP_004306690.1 NC_015271_p39 predicted internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 27456 31412
YP_004306668.1 NC_015271_p17 predicted DNA helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 9127 10044
YP_004306684.1 NC_015271_p33 predicted major capsid protein phrog_267 major head protein head and packaging 1 19829 20881
YP_004306693.1 NC_015271_p42 predicted DNA packaging protein A phrog_1351 terminase small subunit head and packaging 1 33713 33982
YP_004306685.1 NC_015271_p34 predicted tail tubular protein A phrog_446 tail protein tail 1 21082 21672
YP_004306652.1 NC_015271_p1 hypothetical protein phrog_7202 unknown function unknown function 1 491 652
YP_004306689.1 NC_015271_p38 predicted internal virion protein C phrog_1339 internal virion protein head and packaging 1 25186 27429
YP_004306681.1 NC_015271_p30 predicted head to tail joining protein phrog_449 head-tail adaptor connector 1 17107 18717
YP_004306688.1 NC_015271_p37 predicted internal virion protein B phrog_805 internal virion protein head and packaging 1 24589 25179
YP_004306654.1 NC_015271_p3 predicted protein kinase (pseudogene) singleton unknown function unknown function 1 1185 1481
YP_004306696.1 NC_015271_p45 hypothetical protein phrog_2081 HNH endonuclease DNA, RNA and nucleotide metabolism 1 35297 35839
YP_004306661.1 NC_015271_p10 hypothetical protein phrog_2585 nucleotide kinase other 1 6558 6845
YP_004306682.1 NC_015271_p31 predicted capsid assembly protein phrog_1052 head assembly head and packaging 1 18760 19692
YP_004306660.1 NC_015271_p9 hypothetical protein phrog_1777 unknown function unknown function 1 6295 6558
YP_004306662.1 NC_015271_p11 hypothetical protein phrog_1312 unknown function unknown function 1 6847 6984
YP_004306667.1 NC_015271_p16 predicted DNA primase-helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 8944 10044
YP_004306669.1 NC_015271_p18 hypothetical protein singleton unknown function unknown function 1 10464 10700
YP_004306694.1 NC_015271_p43 predicted endopeptidase phrog_1327 Rz-like spanin lysis 1 34091 34534
YP_004306655.1 NC_015271_p4 predicted DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 1552 4203
YP_004306663.1 NC_015271_p12 predicted bacterial RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 6923 7165
YP_004306674.1 NC_015271_p23 hypothetical protein phrog_1334 unknown function unknown function 1 14421 14630
YP_004306673.1 NC_015271_p22 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 14122 14421
YP_004306691.1 NC_015271_p40 predicted tail fiber protein phrog_1640 tail protein tail 1 31494 33467
YP_004306672.1 NC_015271_p21 hypothetical protein phrog_3322 endonuclease DNA, RNA and nucleotide metabolism 1 12990 13466
YP_004306675.1 NC_015271_p24 hypothetical protein phrog_9014 Gp5.9-like inihibitor of recBCD nuclease moron, auxiliary metabolic gene and host takeover 1 14631 14795
YP_004306697.1 NC_015271_p46 predicted endonuclease phrog_6254 HNH endonuclease DNA, RNA and nucleotide metabolism 1 37183 37635
YP_004306686.1 NC_015271_p35 predicted tail tubular protein B phrog_457 tail protein tail 1 21693 24080
YP_004306676.1 NC_015271_p25 predicted exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 14776 15678
YP_004306659.1 NC_015271_p8 hypothetical protein singleton unknown function unknown function 1 6178 6282
YP_004306657.1 NC_015271_p6 predicted host inhibitor phrog_2949 dGTPase inhibitor; target for F exclusion other 1 4591 4848