| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_015271 |
Definition |
Salmonella phage Vi06 complete sequence. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teseptimavirus; Salmonella virus Vi06. |
DB of origin |
REFSEQ |
Length |
38368 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
47 |
%GC |
48.92 |
Number of singletons |
4 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004306670.1 | NC_015271_p19 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 10693 | 10905 |
| YP_004306687.1 | NC_015271_p36 | predicted internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 24168 | 24584 |
| YP_004306695.1 | NC_015271_p44 | hypothetical protein | phrog_4306 | Rz-like spanin | lysis | 1 | 34206 | 34457 |
| YP_004306656.1 | NC_015271_p5 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 4461 | 4589 |
| YP_004306677.1 | NC_015271_p26 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 15889 | 16143 |
| YP_004306653.1 | NC_015271_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 543 | 1076 |
| YP_004306664.1 | NC_015271_p13 | predicted single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7233 | 7937 |
| YP_004306683.1 | NC_015271_p32 | predicted minor capsid protein | phrog_267 | major head protein | head and packaging | 1 | 19829 | 20872 |
| YP_004306683.1 | NC_015271_p32 | predicted minor capsid protein | phrog_267 | major head protein | head and packaging | 1 | 20869 | 21015 |
| YP_004306698.1 | NC_015271_p47 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 37814 | 37963 |
| YP_004306658.1 | NC_015271_p7 | predicted DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 4981 | 6003 |
| YP_004306671.1 | NC_015271_p20 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 10924 | 11193 |
| YP_004306678.1 | NC_015271_p27 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 16148 | 16414 |
| YP_004306692.1 | NC_015271_p41 | predicted lysis protein | phrog_920 | holin | lysis | 1 | 33514 | 33726 |
| YP_004306679.1 | NC_015271_p28 | host specificity protein A | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 16414 | 16815 |
| YP_004306666.1 | NC_015271_p15 | predicted N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 8463 | 8918 |
| YP_004306680.1 | NC_015271_p29 | host specificity protein B | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 16820 | 17092 |
| YP_004306665.1 | NC_015271_p14 | predicted endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 8014 | 8463 |
| YP_004306690.1 | NC_015271_p39 | predicted internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 27456 | 31412 |
| YP_004306668.1 | NC_015271_p17 | predicted DNA helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 9127 | 10044 |
| YP_004306684.1 | NC_015271_p33 | predicted major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 19829 | 20881 |
| YP_004306693.1 | NC_015271_p42 | predicted DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 33713 | 33982 |
| YP_004306685.1 | NC_015271_p34 | predicted tail tubular protein A | phrog_446 | tail protein | tail | 1 | 21082 | 21672 |
| YP_004306652.1 | NC_015271_p1 | hypothetical protein | phrog_7202 | unknown function | unknown function | 1 | 491 | 652 |
| YP_004306689.1 | NC_015271_p38 | predicted internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 25186 | 27429 |
| YP_004306681.1 | NC_015271_p30 | predicted head to tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 17107 | 18717 |
| YP_004306688.1 | NC_015271_p37 | predicted internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 24589 | 25179 |
| YP_004306654.1 | NC_015271_p3 | predicted protein kinase (pseudogene) | singleton | unknown function | unknown function | 1 | 1185 | 1481 |
| YP_004306696.1 | NC_015271_p45 | hypothetical protein | phrog_2081 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 35297 | 35839 |
| YP_004306661.1 | NC_015271_p10 | hypothetical protein | phrog_2585 | nucleotide kinase | other | 1 | 6558 | 6845 |
| YP_004306682.1 | NC_015271_p31 | predicted capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 18760 | 19692 |
| YP_004306660.1 | NC_015271_p9 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 6295 | 6558 |
| YP_004306662.1 | NC_015271_p11 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 6847 | 6984 |
| YP_004306667.1 | NC_015271_p16 | predicted DNA primase-helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 8944 | 10044 |
| YP_004306669.1 | NC_015271_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10464 | 10700 |
| YP_004306694.1 | NC_015271_p43 | predicted endopeptidase | phrog_1327 | Rz-like spanin | lysis | 1 | 34091 | 34534 |
| YP_004306655.1 | NC_015271_p4 | predicted DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 1552 | 4203 |
| YP_004306663.1 | NC_015271_p12 | predicted bacterial RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 6923 | 7165 |
| YP_004306674.1 | NC_015271_p23 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 14421 | 14630 |
| YP_004306673.1 | NC_015271_p22 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 14122 | 14421 |
| YP_004306691.1 | NC_015271_p40 | predicted tail fiber protein | phrog_1640 | tail protein | tail | 1 | 31494 | 33467 |
| YP_004306672.1 | NC_015271_p21 | hypothetical protein | phrog_3322 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12990 | 13466 |
| YP_004306675.1 | NC_015271_p24 | hypothetical protein | phrog_9014 | Gp5.9-like inihibitor of recBCD nuclease | moron, auxiliary metabolic gene and host takeover | 1 | 14631 | 14795 |
| YP_004306697.1 | NC_015271_p46 | predicted endonuclease | phrog_6254 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37183 | 37635 |
| YP_004306686.1 | NC_015271_p35 | predicted tail tubular protein B | phrog_457 | tail protein | tail | 1 | 21693 | 24080 |
| YP_004306676.1 | NC_015271_p25 | predicted exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14776 | 15678 |
| YP_004306659.1 | NC_015271_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6178 | 6282 |
| YP_004306657.1 | NC_015271_p6 | predicted host inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 4591 | 4848 |