Genomic map of Streptococcus phage Dp-1 (NC_015274)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_015274
Definition
Streptococcus phage Dp-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
56506
Host Name
Streptococcus pneumoniae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
72
%GC
40.33
Number of singletons
11
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004306907.1 NC_015274_p19 HolA DNA polymerase III subunit delta phrog_20214 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 12074 12967
YP_004306905.1 NC_015274_p17 DnaX DNA polymerase III clamp loader complex gamma-tau-delta subunit phrog_5846 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 10215 11240
YP_004306960.1 NC_015274_p72 hypothetical protein phrog_4899 unknown function unknown function 1 55855 56388
YP_004306922.1 NC_015274_p34 hypothetical protein phrog_421 unknown function unknown function -1 19423 19995
YP_004306948.1 NC_015274_p60 hypothetical protein phrog_32035 unknown function unknown function 1 44595 45299
YP_004306910.1 NC_015274_p22 hypothetical protein singleton unknown function unknown function 1 14423 14800
YP_004306903.1 NC_015274_p15 RecA phrog_97 UvsX-like recombinase other 1 8699 9859
YP_004306902.1 NC_015274_p14 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 8208 8699
YP_004306954.1 NC_015274_p66 DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 48718 49362
YP_004306901.1 NC_015274_p13 hypothetical protein singleton unknown function unknown function 1 7670 8239
YP_004306908.1 NC_015274_p20 hypothetical protein singleton unknown function unknown function 1 13020 13163
YP_004306956.1 NC_015274_p68 DnaG phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 50955 51974
YP_004306955.1 NC_015274_p67 DnaB phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 49624 50961
YP_004306911.1 NC_015274_p23 hypothetical protein phrog_31888 unknown function unknown function 1 14800 15084
YP_004306914.1 NC_015274_p26 hypothetical protein phrog_32278 unknown function unknown function 1 15973 16284
YP_004306936.1 NC_015274_p48 hypothetical protein phrog_34317 unknown function unknown function 1 30516 30893
YP_004306898.1 NC_015274_p10 DnaN phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism 1 5346 6419
YP_004306916.1 NC_015274_p28 hypothetical protein singleton unknown function unknown function -1 16859 17338
YP_004306959.1 NC_015274_p71 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 53538 55877
YP_004306951.1 NC_015274_p63 hypothetical protein phrog_32660 unknown function unknown function 1 47200 47541
YP_004306952.1 NC_015274_p64 hypothetical protein phrog_34398 unknown function unknown function 1 47542 47961
YP_004306939.1 NC_015274_p51 hypothetical protein phrog_6541 unknown function unknown function 1 32147 32341
YP_004306912.1 NC_015274_p24 RNA polymerase sigma 28 subunit phrog_37166 unknown function unknown function 1 15081 15476
YP_004306891.1 NC_015274_p3 QueD phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover 1 1350 1871
YP_004306890.1 NC_015274_p2 QueC phrog_1550 QueC-like queuosine biosynthesis moron, auxiliary metabolic gene and host takeover 1 662 1348
YP_004306915.1 NC_015274_p27 hypothetical protein singleton unknown function unknown function -1 16308 16709
YP_004306940.1 NC_015274_p52 TMP phrog_58 tail length tape measure protein tail 1 32386 35835
YP_004306931.1 NC_015274_p43 major capsid protein phrog_29 major head protein head and packaging 1 28017 29096
YP_004306953.1 NC_015274_p65 hypothetical protein phrog_33206 unknown function unknown function 1 48082 48561
YP_004306943.1 NC_015274_p55 minor structural protein phrog_372 tail protein tail 1 40401 42440
YP_004306927.1 NC_015274_p39 hypothetical protein phrog_1315 unknown function unknown function 1 25340 25777
YP_004306918.1 NC_015274_p30 hypothetical protein phrog_35229 unknown function unknown function -1 17712 17891
YP_004306925.1 NC_015274_p37 terminase large subunit phrog_2 terminase large subunit head and packaging 1 22230 23621
YP_004306923.1 NC_015274_p35 RNA 2'-phosphotransferase phrog_38345 unknown function unknown function -1 20094 20411
YP_004306900.1 NC_015274_p12 RecU phrog_843 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 7192 7683
YP_004306889.1 NC_015274_p1 QueF phrog_5949 GTP cyclohydrolase other 1 131 652
YP_004306942.1 NC_015274_p54 antireceptor phrog_10693 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 36698 40390
YP_004306896.1 NC_015274_p8 hypothetical protein singleton unknown function unknown function 1 4852 5025
YP_004306929.1 NC_015274_p41 minor capsid protein phrog_194 head scaffolding protein head and packaging 1 26943 27611
YP_004306909.1 NC_015274_p21 hypothetical protein phrog_28876 metal-dependent phosphohydrolase other 1 13160 14404
YP_004306894.1 NC_015274_p6 QueT phrog_27044 unknown function unknown function 1 3306 3803
YP_004306957.1 NC_015274_p69 RNA polymerase sigma factor phrog_351 RNA polymerase sigma factor transcription regulation 1 52033 52647
YP_004306920.1 NC_015274_p32 hypothetical protein singleton unknown function unknown function -1 18780 19151
YP_004306945.1 NC_015274_p57 hypothetical protein phrog_4257 unknown function unknown function 1 42774 43202
YP_004306917.1 NC_015274_p29 hypothetical protein phrog_33849 unknown function unknown function -1 17521 17715
YP_004306938.1 NC_015274_p50 hypothetical protein phrog_6280 unknown function unknown function 1 31699 32154
YP_004306932.1 NC_015274_p44 hypothetical lipoprotein phrog_3281 endonuclease VII DNA, RNA and nucleotide metabolism 1 29108 29449
YP_004306919.1 NC_015274_p31 hypothetical protein singleton unknown function unknown function -1 18026 18778
YP_004306944.1 NC_015274_p56 hypothetical protein phrog_2566 unknown function unknown function 1 42490 42759
YP_004306906.1 NC_015274_p18 DNA polymerase III gamma-tau subunit phrog_5846 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 11242 12081
YP_004306935.1 NC_015274_p47 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 30154 30507
YP_004306921.1 NC_015274_p33 hypothetical protein singleton unknown function unknown function -1 19161 19529
YP_004306949.1 NC_015274_p61 ATP-dependent helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 45350 46987
YP_004306899.1 NC_015274_p11 RecB phrog_1706 CRISPR/Cas system associated DNA, RNA and nucleotide metabolism 1 6419 7195
YP_004306893.1 NC_015274_p5 FolE phrog_2197 GTP cyclohydrolase other 1 2534 3295
YP_004306930.1 NC_015274_p42 structural protein phrog_909 major head protein head and packaging 1 27627 28004
YP_004306934.1 NC_015274_p46 hypothetical protein phrog_31996 unknown function unknown function 1 29765 30154
YP_004306924.1 NC_015274_p36 hypothetical protein phrog_23746 unknown function unknown function 1 21512 22252
YP_004306926.1 NC_015274_p38 portal protein phrog_64 portal protein head and packaging 1 23674 25434
YP_004306904.1 NC_015274_p16 NAD-dependent DNA ligase phrog_6466 DNA ligase DNA, RNA and nucleotide metabolism 1 9805 10218
YP_004306913.1 NC_015274_p25 hypothetical protein phrog_2002 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 15570 15989
YP_004306950.1 NC_015274_p62 hypothetical protein singleton unknown function unknown function 1 46956 47213
YP_004306947.1 NC_015274_p59 endolysin phrog_998 endolysin lysis 1 43413 44303
YP_004306895.1 NC_015274_p7 queuosine tRNA-ribosyltransferase phrog_887 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover 1 3793 4728
YP_004306958.1 NC_015274_p70 hypothetical protein phrog_14578 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 52762 53490
YP_004306928.1 NC_015274_p40 minor structural protein phrog_1657 head morphogenesis head and packaging 1 25743 26738
YP_004306946.1 NC_015274_p58 holin phrog_881 holin lysis 1 43189 43413
YP_004306933.1 NC_015274_p45 structural protein phrog_4020 unknown function unknown function 1 29451 29768
YP_004306892.1 NC_015274_p4 QueE phrog_2076 QueE-like radical SAM domain moron, auxiliary metabolic gene and host takeover 1 1864 2658
YP_004306937.1 NC_015274_p49 structural protein phrog_6686 tail tube protein tail 1 30896 31675
YP_004306941.1 NC_015274_p53 tail protein phrog_34571 tail protein tail 1 35847 36686
YP_004306897.1 NC_015274_p9 hypothetical protein singleton unknown function unknown function 1 5040 5279