| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_015274 |
Definition |
Streptococcus phage Dp-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
56506 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
72 |
%GC |
40.33 |
Number of singletons |
11 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004306907.1 | NC_015274_p19 | HolA DNA polymerase III subunit delta | phrog_20214 | clamp loader of DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 12074 | 12967 |
| YP_004306905.1 | NC_015274_p17 | DnaX DNA polymerase III clamp loader complex gamma-tau-delta subunit | phrog_5846 | clamp loader of DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 10215 | 11240 |
| YP_004306960.1 | NC_015274_p72 | hypothetical protein | phrog_4899 | unknown function | unknown function | 1 | 55855 | 56388 |
| YP_004306922.1 | NC_015274_p34 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 19423 | 19995 |
| YP_004306948.1 | NC_015274_p60 | hypothetical protein | phrog_32035 | unknown function | unknown function | 1 | 44595 | 45299 |
| YP_004306910.1 | NC_015274_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14423 | 14800 |
| YP_004306903.1 | NC_015274_p15 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 8699 | 9859 |
| YP_004306902.1 | NC_015274_p14 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 8208 | 8699 |
| YP_004306954.1 | NC_015274_p66 | DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 48718 | 49362 |
| YP_004306901.1 | NC_015274_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7670 | 8239 |
| YP_004306908.1 | NC_015274_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13020 | 13163 |
| YP_004306956.1 | NC_015274_p68 | DnaG | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 50955 | 51974 |
| YP_004306955.1 | NC_015274_p67 | DnaB | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 49624 | 50961 |
| YP_004306911.1 | NC_015274_p23 | hypothetical protein | phrog_31888 | unknown function | unknown function | 1 | 14800 | 15084 |
| YP_004306914.1 | NC_015274_p26 | hypothetical protein | phrog_32278 | unknown function | unknown function | 1 | 15973 | 16284 |
| YP_004306936.1 | NC_015274_p48 | hypothetical protein | phrog_34317 | unknown function | unknown function | 1 | 30516 | 30893 |
| YP_004306898.1 | NC_015274_p10 | DnaN | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 5346 | 6419 |
| YP_004306916.1 | NC_015274_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16859 | 17338 |
| YP_004306959.1 | NC_015274_p71 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 53538 | 55877 |
| YP_004306951.1 | NC_015274_p63 | hypothetical protein | phrog_32660 | unknown function | unknown function | 1 | 47200 | 47541 |
| YP_004306952.1 | NC_015274_p64 | hypothetical protein | phrog_34398 | unknown function | unknown function | 1 | 47542 | 47961 |
| YP_004306939.1 | NC_015274_p51 | hypothetical protein | phrog_6541 | unknown function | unknown function | 1 | 32147 | 32341 |
| YP_004306912.1 | NC_015274_p24 | RNA polymerase sigma 28 subunit | phrog_37166 | unknown function | unknown function | 1 | 15081 | 15476 |
| YP_004306891.1 | NC_015274_p3 | QueD | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | 1 | 1350 | 1871 |
| YP_004306890.1 | NC_015274_p2 | QueC | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | 1 | 662 | 1348 |
| YP_004306915.1 | NC_015274_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16308 | 16709 |
| YP_004306940.1 | NC_015274_p52 | TMP | phrog_58 | tail length tape measure protein | tail | 1 | 32386 | 35835 |
| YP_004306931.1 | NC_015274_p43 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 28017 | 29096 |
| YP_004306953.1 | NC_015274_p65 | hypothetical protein | phrog_33206 | unknown function | unknown function | 1 | 48082 | 48561 |
| YP_004306943.1 | NC_015274_p55 | minor structural protein | phrog_372 | tail protein | tail | 1 | 40401 | 42440 |
| YP_004306927.1 | NC_015274_p39 | hypothetical protein | phrog_1315 | unknown function | unknown function | 1 | 25340 | 25777 |
| YP_004306918.1 | NC_015274_p30 | hypothetical protein | phrog_35229 | unknown function | unknown function | -1 | 17712 | 17891 |
| YP_004306925.1 | NC_015274_p37 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 22230 | 23621 |
| YP_004306923.1 | NC_015274_p35 | RNA 2'-phosphotransferase | phrog_38345 | unknown function | unknown function | -1 | 20094 | 20411 |
| YP_004306900.1 | NC_015274_p12 | RecU | phrog_843 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 7192 | 7683 |
| YP_004306889.1 | NC_015274_p1 | QueF | phrog_5949 | GTP cyclohydrolase | other | 1 | 131 | 652 |
| YP_004306942.1 | NC_015274_p54 | antireceptor | phrog_10693 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 36698 | 40390 |
| YP_004306896.1 | NC_015274_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4852 | 5025 |
| YP_004306929.1 | NC_015274_p41 | minor capsid protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 26943 | 27611 |
| YP_004306909.1 | NC_015274_p21 | hypothetical protein | phrog_28876 | metal-dependent phosphohydrolase | other | 1 | 13160 | 14404 |
| YP_004306894.1 | NC_015274_p6 | QueT | phrog_27044 | unknown function | unknown function | 1 | 3306 | 3803 |
| YP_004306957.1 | NC_015274_p69 | RNA polymerase sigma factor | phrog_351 | RNA polymerase sigma factor | transcription regulation | 1 | 52033 | 52647 |
| YP_004306920.1 | NC_015274_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18780 | 19151 |
| YP_004306945.1 | NC_015274_p57 | hypothetical protein | phrog_4257 | unknown function | unknown function | 1 | 42774 | 43202 |
| YP_004306917.1 | NC_015274_p29 | hypothetical protein | phrog_33849 | unknown function | unknown function | -1 | 17521 | 17715 |
| YP_004306938.1 | NC_015274_p50 | hypothetical protein | phrog_6280 | unknown function | unknown function | 1 | 31699 | 32154 |
| YP_004306932.1 | NC_015274_p44 | hypothetical lipoprotein | phrog_3281 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 29108 | 29449 |
| YP_004306919.1 | NC_015274_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18026 | 18778 |
| YP_004306944.1 | NC_015274_p56 | hypothetical protein | phrog_2566 | unknown function | unknown function | 1 | 42490 | 42759 |
| YP_004306906.1 | NC_015274_p18 | DNA polymerase III gamma-tau subunit | phrog_5846 | clamp loader of DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11242 | 12081 |
| YP_004306935.1 | NC_015274_p47 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 30154 | 30507 |
| YP_004306921.1 | NC_015274_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19161 | 19529 |
| YP_004306949.1 | NC_015274_p61 | ATP-dependent helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 45350 | 46987 |
| YP_004306899.1 | NC_015274_p11 | RecB | phrog_1706 | CRISPR/Cas system associated | DNA, RNA and nucleotide metabolism | 1 | 6419 | 7195 |
| YP_004306893.1 | NC_015274_p5 | FolE | phrog_2197 | GTP cyclohydrolase | other | 1 | 2534 | 3295 |
| YP_004306930.1 | NC_015274_p42 | structural protein | phrog_909 | major head protein | head and packaging | 1 | 27627 | 28004 |
| YP_004306934.1 | NC_015274_p46 | hypothetical protein | phrog_31996 | unknown function | unknown function | 1 | 29765 | 30154 |
| YP_004306924.1 | NC_015274_p36 | hypothetical protein | phrog_23746 | unknown function | unknown function | 1 | 21512 | 22252 |
| YP_004306926.1 | NC_015274_p38 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 23674 | 25434 |
| YP_004306904.1 | NC_015274_p16 | NAD-dependent DNA ligase | phrog_6466 | DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 9805 | 10218 |
| YP_004306913.1 | NC_015274_p25 | hypothetical protein | phrog_2002 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 15570 | 15989 |
| YP_004306950.1 | NC_015274_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46956 | 47213 |
| YP_004306947.1 | NC_015274_p59 | endolysin | phrog_998 | endolysin | lysis | 1 | 43413 | 44303 |
| YP_004306895.1 | NC_015274_p7 | queuosine tRNA-ribosyltransferase | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 3793 | 4728 |
| YP_004306958.1 | NC_015274_p70 | hypothetical protein | phrog_14578 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 52762 | 53490 |
| YP_004306928.1 | NC_015274_p40 | minor structural protein | phrog_1657 | head morphogenesis | head and packaging | 1 | 25743 | 26738 |
| YP_004306946.1 | NC_015274_p58 | holin | phrog_881 | holin | lysis | 1 | 43189 | 43413 |
| YP_004306933.1 | NC_015274_p45 | structural protein | phrog_4020 | unknown function | unknown function | 1 | 29451 | 29768 |
| YP_004306892.1 | NC_015274_p4 | QueE | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | 1 | 1864 | 2658 |
| YP_004306937.1 | NC_015274_p49 | structural protein | phrog_6686 | tail tube protein | tail | 1 | 30896 | 31675 |
| YP_004306941.1 | NC_015274_p53 | tail protein | phrog_34571 | tail protein | tail | 1 | 35847 | 36686 |
| YP_004306897.1 | NC_015274_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5040 | 5279 |