| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_015453 |
Definition |
Propionibacterium phage PAS50 endogenous virus, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pahexavirus. |
DB of origin |
REFSEQ |
Length |
29017 |
Host Name |
Propionibacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
46 |
%GC |
53.97 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004414715.1 | NC_015453_p10 | hypothetical protein | phrog_1892 | minor tail protein | tail | 1 | 6737 | 7108 |
| YP_004414710.1 | NC_015453_p5 | scaffold protein | phrog_1879 | head scaffolding protein | head and packaging | 1 | 4081 | 4635 |
| YP_004414751.1 | NC_015453_p46 | endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 28663 | 28968 |
| YP_004414739.1 | NC_015453_p34 | hypothetical protein | phrog_1288 | unknown function | unknown function | -1 | 22737 | 23201 |
| YP_004414738.1 | NC_015453_p33 | DNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 21831 | 22694 |
| YP_004414724.1 | NC_015453_p19 | tail protein | phrog_1806 | collagen like minor tail | tail | 1 | 14607 | 15269 |
| YP_004414750.1 | NC_015453_p45 | hypothetical protein | phrog_13647 | unknown function | unknown function | 1 | 28435 | 28569 |
| YP_004414720.1 | NC_015453_p15 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 11298 | 12239 |
| YP_004414732.1 | NC_015453_p27 | hypothetical protein | phrog_1923 | unknown function | unknown function | -1 | 19263 | 19457 |
| YP_004414707.1 | NC_015453_p2 | large terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 378 | 1889 |
| YP_004414731.1 | NC_015453_p26 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 18220 | 19266 |
| YP_004414714.1 | NC_015453_p9 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 6450 | 6740 |
| YP_004414740.1 | NC_015453_p35 | hypothetical protein | phrog_1890 | unknown function | unknown function | -1 | 23242 | 23652 |
| YP_004414711.1 | NC_015453_p6 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 4642 | 5589 |
| YP_004414730.1 | NC_015453_p25 | hypothetical protein | phrog_1340 | unknown function | unknown function | -1 | 17892 | 18212 |
| YP_004414726.1 | NC_015453_p21 | holin | phrog_443 | holin | lysis | 1 | 16188 | 16589 |
| YP_004414722.1 | NC_015453_p17 | hypothetical protein | phrog_1910 | lectin | other | 1 | 13421 | 14239 |
| YP_004414737.1 | NC_015453_p32 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 21475 | 21831 |
| YP_004414743.1 | NC_015453_p38 | hypothetical protein | phrog_1937 | unknown function | unknown function | -1 | 25139 | 25342 |
| YP_004414744.1 | NC_015453_p39 | hypothetical protein | phrog_1884 | unknown function | unknown function | -1 | 25339 | 25566 |
| YP_004414719.1 | NC_015453_p14 | tape measure | phrog_58 | tail length tape measure protein | tail | 1 | 8517 | 11282 |
| YP_004414749.1 | NC_015453_p44 | hypothetical protein | phrog_8276 | unknown function | unknown function | 1 | 28150 | 28305 |
| YP_004414721.1 | NC_015453_p16 | protease | phrog_110 | minor tail protein | tail | 1 | 12247 | 13404 |
| YP_004414713.1 | NC_015453_p8 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 6096 | 6443 |
| YP_004414741.1 | NC_015453_p36 | exonuclease | phrog_1870 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 23649 | 24680 |
| YP_004414742.1 | NC_015453_p37 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 24680 | 25033 |
| YP_004414733.1 | NC_015453_p28 | hypothetical protein | phrog_2548 | unknown function | unknown function | -1 | 19441 | 20004 |
| YP_004414708.1 | NC_015453_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 1886 | 3211 |
| YP_004414727.1 | NC_015453_p22 | hypothetical protein | phrog_22752 | unknown function | unknown function | 1 | 16941 | 17174 |
| YP_004414746.1 | NC_015453_p41 | hypothetical protein | phrog_7707 | unknown function | unknown function | -1 | 26208 | 26492 |
| YP_004414747.1 | NC_015453_p42 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 26621 | 26932 |
| YP_004414725.1 | NC_015453_p20 | amidase | phrog_670 | endolysin | lysis | 1 | 15318 | 16175 |
| YP_004414706.1 | NC_015453_p1 | small terminase | phrog_1897 | terminase small subunit | head and packaging | 1 | 2 | 373 |
| YP_004414716.1 | NC_015453_p11 | major tail protein | phrog_117 | major tail protein | tail | 1 | 7161 | 7799 |
| YP_004414718.1 | NC_015453_p13 | hypothetical protein | phrog_3166 | unknown function | unknown function | 1 | 8222 | 8509 |
| YP_004414717.1 | NC_015453_p12 | hypothetical protein | phrog_1927 | tail assembly chaperone | tail | 1 | 7827 | 8123 |
| YP_004414735.1 | NC_015453_p30 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 20609 | 21277 |
| YP_004414723.1 | NC_015453_p18 | hypothetical protein | phrog_1958 | minor tail protein | tail | 1 | 14308 | 14553 |
| YP_004414745.1 | NC_015453_p40 | hypothetical protein | phrog_1908 | unknown function | unknown function | -1 | 25591 | 26124 |
| YP_004414734.1 | NC_015453_p29 | hypothetical protein | phrog_1881 | unknown function | unknown function | -1 | 20001 | 20564 |
| YP_004414709.1 | NC_015453_p4 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 3218 | 3973 |
| YP_004414729.1 | NC_015453_p24 | hypothetical protein | phrog_1947 | unknown function | unknown function | -1 | 17595 | 17879 |
| YP_004414748.1 | NC_015453_p43 | hypothetical protein | phrog_25681 | unknown function | unknown function | -1 | 27008 | 27274 |
| YP_004414736.1 | NC_015453_p31 | DNA primase | phrog_2304 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 21114 | 21515 |
| YP_004414728.1 | NC_015453_p23 | sigma factor like | phrog_1729 | unknown function | unknown function | -1 | 17202 | 17591 |
| YP_004414712.1 | NC_015453_p7 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 5633 | 6094 |