Genomic map of Propionibacterium phage PAD20 (NC_015454)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_015454
Definition
Propionibacterium phage PAD20 endogenous virus, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pahexavirus.
DB of origin
REFSEQ
Length
29074
Host Name
Propionibacterium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
45
%GC
54.09
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004414782.1 NC_015454_p31 DNA primase phrog_2304 DNA primase DNA, RNA and nucleotide metabolism -1 20949 21350
YP_004414790.1 NC_015454_p39 hypothetical protein phrog_1884 unknown function unknown function -1 25091 25318
YP_004414784.1 NC_015454_p33 DNA helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 21666 22529
YP_004414778.1 NC_015454_p27 hypothetical protein phrog_1923 unknown function unknown function -1 19095 19289
YP_004414796.1 NC_015454_p45 endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 28723 29025
YP_004414795.1 NC_015454_p44 hypothetical protein phrog_13647 unknown function unknown function 1 28492 28626
YP_004414754.1 NC_015454_p3 portal protein phrog_104 portal protein head and packaging 1 1886 3211
YP_004414758.1 NC_015454_p7 hypothetical protein phrog_1290 head-tail adaptor connector 1 5636 6097
YP_004414780.1 NC_015454_p29 hypothetical protein phrog_1881 unknown function unknown function -1 19833 20396
YP_004414792.1 NC_015454_p41 hypothetical protein phrog_919 unknown function unknown function -1 26000 26311
YP_004414781.1 NC_015454_p30 DNA primase phrog_849 DNA primase DNA, RNA and nucleotide metabolism -1 20441 21112
YP_004414789.1 NC_015454_p38 hypothetical protein phrog_1937 unknown function unknown function -1 24891 25094
YP_004414771.1 NC_015454_p20 amidase phrog_670 endolysin lysis 1 15389 16252
YP_004414788.1 NC_015454_p37 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism -1 24432 24785
YP_004414763.1 NC_015454_p12 hypothetical protein phrog_1927 tail assembly chaperone tail 1 7821 8114
YP_004414767.1 NC_015454_p16 protease phrog_110 minor tail protein tail 1 12238 13395
YP_004414769.1 NC_015454_p18 hypothetical protein phrog_1958 minor tail protein tail 1 14300 14539
YP_004414793.1 NC_015454_p42 hypothetical protein phrog_25681 unknown function unknown function -1 26387 26653
YP_004414791.1 NC_015454_p40 hypothetical protein phrog_1908 unknown function unknown function -1 25343 25876
YP_004414764.1 NC_015454_p13 hypothetical protein phrog_3166 unknown function unknown function 1 8213 8500
YP_004414779.1 NC_015454_p28 hypothetical protein phrog_2548 unknown function unknown function -1 19273 19836
YP_004414761.1 NC_015454_p10 hypothetical protein phrog_1892 minor tail protein tail 1 6740 7111
YP_004414765.1 NC_015454_p14 tape measure phrog_58 tail length tape measure protein tail 1 8508 11273
YP_004414785.1 NC_015454_p34 hypothetical protein phrog_1288 unknown function unknown function -1 22572 23036
YP_004414755.1 NC_015454_p4 hypothetical protein phrog_193 head maturation protease head and packaging 1 3218 3973
YP_004414768.1 NC_015454_p17 hypothetical protein phrog_1910 lectin other 1 13413 14231
YP_004414760.1 NC_015454_p9 hypothetical protein phrog_387 neck protein connector 1 6453 6743
YP_004414753.1 NC_015454_p2 large terminase phrog_9 terminase large subunit head and packaging 1 378 1889
YP_004414757.1 NC_015454_p6 major head protein phrog_10 major head protein head and packaging 1 4645 5592
YP_004414787.1 NC_015454_p36 exonuclease phrog_1870 exonuclease DNA, RNA and nucleotide metabolism -1 23503 24432
YP_004414794.1 NC_015454_p43 hypothetical protein phrog_8276 unknown function unknown function 1 28207 28362
YP_004414762.1 NC_015454_p11 major tail protein phrog_117 major tail protein tail 1 7164 7793
YP_004414756.1 NC_015454_p5 scaffold protein phrog_1879 head scaffolding protein head and packaging 1 4084 4638
YP_004414777.1 NC_015454_p26 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism -1 18052 19098
YP_004414773.1 NC_015454_p22 hypothetical protein phrog_22752 unknown function unknown function 1 16676 17005
YP_004414772.1 NC_015454_p21 holin phrog_443 holin lysis 1 16265 16669
YP_004414776.1 NC_015454_p25 hypothetical protein phrog_1340 unknown function unknown function -1 17721 18041
YP_004414766.1 NC_015454_p15 minor tail subunit phrog_106 minor tail protein tail 1 11289 12230
YP_004414752.1 NC_015454_p1 small terminase phrog_1897 terminase small subunit head and packaging 1 2 373
YP_004414759.1 NC_015454_p8 hypothetical protein phrog_501 head closure Hc1 connector 1 6099 6446
YP_004414775.1 NC_015454_p24 hypothetical protein phrog_1947 unknown function unknown function -1 17425 17706
YP_004414783.1 NC_015454_p32 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 21310 21666
YP_004414770.1 NC_015454_p19 tail protein phrog_1806 collagen like minor tail tail 1 14599 15339
YP_004414786.1 NC_015454_p35 hypothetical protein phrog_1890 unknown function unknown function -1 23078 23488
YP_004414774.1 NC_015454_p23 sigma factor like phrog_1729 unknown function unknown function -1 17033 17428