| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_015454 |
Definition |
Propionibacterium phage PAD20 endogenous virus, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pahexavirus. |
DB of origin |
REFSEQ |
Length |
29074 |
Host Name |
Propionibacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
54.09 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004414782.1 | NC_015454_p31 | DNA primase | phrog_2304 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 20949 | 21350 |
| YP_004414790.1 | NC_015454_p39 | hypothetical protein | phrog_1884 | unknown function | unknown function | -1 | 25091 | 25318 |
| YP_004414784.1 | NC_015454_p33 | DNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 21666 | 22529 |
| YP_004414778.1 | NC_015454_p27 | hypothetical protein | phrog_1923 | unknown function | unknown function | -1 | 19095 | 19289 |
| YP_004414796.1 | NC_015454_p45 | endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 28723 | 29025 |
| YP_004414795.1 | NC_015454_p44 | hypothetical protein | phrog_13647 | unknown function | unknown function | 1 | 28492 | 28626 |
| YP_004414754.1 | NC_015454_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 1886 | 3211 |
| YP_004414758.1 | NC_015454_p7 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 5636 | 6097 |
| YP_004414780.1 | NC_015454_p29 | hypothetical protein | phrog_1881 | unknown function | unknown function | -1 | 19833 | 20396 |
| YP_004414792.1 | NC_015454_p41 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 26000 | 26311 |
| YP_004414781.1 | NC_015454_p30 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 20441 | 21112 |
| YP_004414789.1 | NC_015454_p38 | hypothetical protein | phrog_1937 | unknown function | unknown function | -1 | 24891 | 25094 |
| YP_004414771.1 | NC_015454_p20 | amidase | phrog_670 | endolysin | lysis | 1 | 15389 | 16252 |
| YP_004414788.1 | NC_015454_p37 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 24432 | 24785 |
| YP_004414763.1 | NC_015454_p12 | hypothetical protein | phrog_1927 | tail assembly chaperone | tail | 1 | 7821 | 8114 |
| YP_004414767.1 | NC_015454_p16 | protease | phrog_110 | minor tail protein | tail | 1 | 12238 | 13395 |
| YP_004414769.1 | NC_015454_p18 | hypothetical protein | phrog_1958 | minor tail protein | tail | 1 | 14300 | 14539 |
| YP_004414793.1 | NC_015454_p42 | hypothetical protein | phrog_25681 | unknown function | unknown function | -1 | 26387 | 26653 |
| YP_004414791.1 | NC_015454_p40 | hypothetical protein | phrog_1908 | unknown function | unknown function | -1 | 25343 | 25876 |
| YP_004414764.1 | NC_015454_p13 | hypothetical protein | phrog_3166 | unknown function | unknown function | 1 | 8213 | 8500 |
| YP_004414779.1 | NC_015454_p28 | hypothetical protein | phrog_2548 | unknown function | unknown function | -1 | 19273 | 19836 |
| YP_004414761.1 | NC_015454_p10 | hypothetical protein | phrog_1892 | minor tail protein | tail | 1 | 6740 | 7111 |
| YP_004414765.1 | NC_015454_p14 | tape measure | phrog_58 | tail length tape measure protein | tail | 1 | 8508 | 11273 |
| YP_004414785.1 | NC_015454_p34 | hypothetical protein | phrog_1288 | unknown function | unknown function | -1 | 22572 | 23036 |
| YP_004414755.1 | NC_015454_p4 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 3218 | 3973 |
| YP_004414768.1 | NC_015454_p17 | hypothetical protein | phrog_1910 | lectin | other | 1 | 13413 | 14231 |
| YP_004414760.1 | NC_015454_p9 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 6453 | 6743 |
| YP_004414753.1 | NC_015454_p2 | large terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 378 | 1889 |
| YP_004414757.1 | NC_015454_p6 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 4645 | 5592 |
| YP_004414787.1 | NC_015454_p36 | exonuclease | phrog_1870 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 23503 | 24432 |
| YP_004414794.1 | NC_015454_p43 | hypothetical protein | phrog_8276 | unknown function | unknown function | 1 | 28207 | 28362 |
| YP_004414762.1 | NC_015454_p11 | major tail protein | phrog_117 | major tail protein | tail | 1 | 7164 | 7793 |
| YP_004414756.1 | NC_015454_p5 | scaffold protein | phrog_1879 | head scaffolding protein | head and packaging | 1 | 4084 | 4638 |
| YP_004414777.1 | NC_015454_p26 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 18052 | 19098 |
| YP_004414773.1 | NC_015454_p22 | hypothetical protein | phrog_22752 | unknown function | unknown function | 1 | 16676 | 17005 |
| YP_004414772.1 | NC_015454_p21 | holin | phrog_443 | holin | lysis | 1 | 16265 | 16669 |
| YP_004414776.1 | NC_015454_p25 | hypothetical protein | phrog_1340 | unknown function | unknown function | -1 | 17721 | 18041 |
| YP_004414766.1 | NC_015454_p15 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 11289 | 12230 |
| YP_004414752.1 | NC_015454_p1 | small terminase | phrog_1897 | terminase small subunit | head and packaging | 1 | 2 | 373 |
| YP_004414759.1 | NC_015454_p8 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 6099 | 6446 |
| YP_004414775.1 | NC_015454_p24 | hypothetical protein | phrog_1947 | unknown function | unknown function | -1 | 17425 | 17706 |
| YP_004414783.1 | NC_015454_p32 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 21310 | 21666 |
| YP_004414770.1 | NC_015454_p19 | tail protein | phrog_1806 | collagen like minor tail | tail | 1 | 14599 | 15339 |
| YP_004414786.1 | NC_015454_p35 | hypothetical protein | phrog_1890 | unknown function | unknown function | -1 | 23078 | 23488 |
| YP_004414774.1 | NC_015454_p23 | sigma factor like | phrog_1729 | unknown function | unknown function | -1 | 17033 | 17428 |